| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF009M22 | Sequence | 600 | 013568 (2) | ref|XP_003635344.1| | 3e-05 | PREDICTED: LOW QUALITY PROTEIN: probable protein phosphatase 2C 60 [Vitis vinif | 711 | 006808 (4) | ref|XP_002530628.1| | 1e-93 | protein phosphatase 2c, putative [Ricinus communis] gb|EEF31736.1| protein phosp |
| JMFF011A09 | Sequence | 518 | 013353 (3) | ref|XP_003635344.1| | 7e-14 | PREDICTED: LOW QUALITY PROTEIN: probable protein phosphatase 2C 60 [Vitis vinif | 711 | 006808 (4) | ref|XP_010266882.1| | 4e-70 | PREDICTED: probable protein phosphatase 2C 60 [Nelumbo nucifera] ref|XP_01026688 |
| JMSF022B03 | Sequence | 686 | 013353 (3) | ref|XP_006343345.1| | 1e-34 | PREDICTED: probable protein phosphatase 2C 60-like isoform X1 [Solanum tuberosu | 770 | 006808 (4) | ref|XP_002530628.1| | 4e-102 | protein phosphatase 2c, putative [Ricinus communis] gb|EEF31736.1| protein phosp |
| JMSF050C23 | Sequence | 656 | 013568 (2) | 688 | 006808 (4) | ref|XP_002530628.1| | 3e-82 | protein phosphatase 2c, putative [Ricinus communis] gb|EEF31736.1| protein phosp | |||
This contig is upended
. : . : . : . : . : . :
rJMFF009M22+ TCTGAAGCGTAATGTATGGCGGGTAAAGGGCCTTGATACAGAT
rJMSF022B03+ CCACAGATTGTTTTTCTGAAGCGTAATGTATGGCGGGTAAAGGG-CTTGATACAGAT
____________________________________________________________
consensus CCACAGATTGTTTTTCTGAAGCGTAATGTATGGCGGGTAAAGGGCCTTGATACAGAT
. : . : . : . : . : . :
rJMFF009M22+ TTCCAGATCCATTGGTGATGTGTATCTTAAAAAGGCTGAATACAACAGAGAGCCTTTGTA
rJMSF022B03+ TTCCAGATCCATTGGTGATGTGTATCTTAAAAAGGCTGAATACAACAGAGAGCCTTTGTA
rJMSF050C23+ GGCTGAATACAACAGAGAGCCTTTGTA
____________________________________________________________
consensus TTCCAGATCCATTGGTGATGTGTATCTTAAAAAGGCTGAATACAACAGAGAGCCTTTGTA
. : . : . : . : . : . :
rJMFF009M22+ TGCTAAATTTCGTTTGAAGGAACCCTTTAACAG-CCCCATATTGAGCTCAGAGCCATCAA
rJMSF022B03+ TGCTAAATTTCGTTTGAAGGAACCCTTTAACAG-CCCCATATTGAGCTCAGAGCCATCAA
rJMSF050C23+ TGCTAAATTTCGTTTGAAGGAACCCTTTAACAG-CCCCATATTGAGCTCAGAGCCATCAA
rJMFF011A09+ TCGTTTGAAGGAACCCTTTAACAGCCCCCATATTGAGCTCAGAGCCATCAA
____________________________________________________________
consensus TGCTAAATTTCGTTTGAAGGAACCCTTTAACAG-CCCCATATTGAGCTCAGAGCCATCAA
. : . : . : . : . : . :
rJMFF009M22+ TTTTAGTGCATGAAATTGAGCAGCACGATCAGTTTCTCATATTTGCTTCTGATGGTCTTT
rJMSF022B03+ TTTTAGTGCATGAAATTGAGCAGCACGATCAGTTTCTCATATTTGCTTCTGATGGTCTTT
rJMSF050C23+ TTTTAGTGCATGAAATTGAGCAGCACGATCAGTTTCTCATATTTGCTTCTGATGGTCTTT
rJMFF011A09+ TTTTAGTGCATGAAATTGAGCAGCACGATCAGTTTCTCATATTTGCTTCTGATGGTCTTT
____________________________________________________________
consensus TTTTAGTGCATGAAATTGAGCAGCACGATCAGTTTCTCATATTTGCTTCTGATGGTCTTT
. : . : . : . : . : . :
rJMFF009M22+ GGGAACACCTTAGCAATCAAGAGGCAGTTGATATAGTACAAAGTGGCCCTCAAAATGGAA
rJMSF022B03+ GGGAACACCTTAGCAATCAAGAGGCAGTTGATATAGTACAAAGTGGCCCTCAAAATGGAA
rJMSF050C23+ GGGAACACCTTAGCAATCAAGAGGCAGTTGATATAGTACAAAGTGGCCCTCAAAATGGAA
rJMFF011A09+ GGGAACACCTTAGCAATCAAGAGGCAGTTGATATAGTACAAAGTGGCCCTCAAAATGGAA
____________________________________________________________
consensus GGGAACACCTTAGCAATCAAGAGGCAGTTGATATAGTACAAAGTGGCCCTCAAAATGGAA
. : . : . : . : . : . :
rJMFF009M22+ GTGCTCGAAGGCTTGTGAAAGCTGCACTGCAAGATGCAGCTAAGAAAAGAGAGATGAGGT
rJMSF022B03+ GTGCTCGAAGGCTTGTGAAAGCTGCACTGCAAGATGCAGCTAAGAAAAGAGAGATGAGGT
rJMSF050C23+ GTGCTCGAAGGCTTGTGAAAGCTGCACTGCAAGATGCAGCTAAGAAAAGAGAGATGAGGT
rJMFF011A09+ GTGCTCGAAGGCTTGTGAAAGCTGCACTGCAAGATGCAGCTAAGAAAAGAGAGATGAGGT
____________________________________________________________
consensus GTGCTCGAAGGCTTGTGAAAGCTGCACTGCAAGATGCAGCTAAGAAAAGAGAGATGAGGT
. : . : . : . : . : . :
rJMFF009M22+ ACTCTGATCTGAAGAAGATTGAGCGAGGCGTGAGAAGGCATTTTCATGATGACATGACAA
rJMSF022B03+ ACTCTGATCTGAAGAAGATTGAGCGAGGCGTGAGAAGGCATTTTCATGATGACATGACAA
rJMSF050C23+ ACTCTGATCTGAAGAAGATTGAGCGAGGCGTGAGAAGGCATTTTCATGATGACATGACAA
rJMFF011A09+ ACTCTGATCTGAAGAAGATTGAGCGAGGCGTGAGAAGGCATTTTCATGATGACATGACAA
____________________________________________________________
consensus ACTCTGATCTGAAGAAGATTGAGCGAGGCGTGAGAAGGCATTTTCATGATGACATGACAA
. : . : . : . : . : . :
rJMFF009M22+ TCATTGTCGTATTTCTAGATTCAAATCTTGTAAGTAGAGCCACTGCGTTAAAAGGACCCA
rJMSF022B03+ TCATTGTCGTATTTCTAGATTCAAATCTTGTAAGTAGAGCCACTGCGTTAAAAGGACCCA
rJMSF050C23+ TCATTGTCGTATTTCTAGATTCAAATCTTGTAAGTAGAGCCACTGCGTTAAAAGGACCCA
rJMFF011A09+ TCATTGTCGTATTTCTAGATTCAAATCTTGTAAGTAGAGCCACTGCGTTAAAAGGACCCA
____________________________________________________________
consensus TCATTGTCGTATTTCTAGATTCAAATCTTGTAAGTAGAGCCACTGCGTTAAAAGGACCCA
. : . : . : . : . : . :
rJMFF009M22+ CTTTATCTTTGAGAGGAGGTGGCGTCCATCTACCTGCAAAAACTTTGGCTCCTGTGTGAT
rJMSF022B03+ CTTTATCTTTGAGAGGAGGTGGCGTCCATCTACCTGCAAAAACTTTGGCTCCTGTGTGAT
rJMSF050C23+ CTTTATCTTTGAGAGGAGGTGGCGTCCATCTACCTGCAAAAACTTTGGCTCCTGTGTGAT
rJMFF011A09+ CTTTATCTTTGAGAGGAGGTGGCGTCCATCTACCTGCAAAAACTTTGGCTCCTGTGTGAT
____________________________________________________________
consensus CTTTATCTTTGAGAGGAGGTGGCGTCCATCTACCTGCAAAAACTTTGGCTCCTGTGTGAT
. : . : . : . : . : . :
rJMFF009M22+ GCACCTATGGAATGAACGCGGTACCTCTTAAACCCTCTATCTTTCATGTGCCCATGCTTA
rJMSF022B03+ GCACCTATGGAATGAACGCGGTACCTCTTAAACCCTCTATCTTTCATGTGCCCATGCTTA
rJMSF050C23+ GCACCTATGGAATGAACGCGGTACCTCTTAAACCCTCTATCTTTCATGTGCCCATGCTTA
rJMFF011A09+ GCACCTATGGAATGAACGCGGTACCTCTTAAACCCTCTATCTTTCATGTGCCCATGCTTA
____________________________________________________________
consensus GCACCTATGGAATGAACGCGGTACCTCTTAAACCCTCTATCTTTCATGTGCCCATGCTTA
. : . : . : . : . : . :
rJMFF009M22+ TGGTAAATTAAACAAAAATCTTTAGAGGGTGCACCACTAAATTTAATTCTTCAATGTAAA
rJMSF022B03+ TGGTAAATTAAACAAAAATCTTTAGAGGGTGCACCACTAAATTTAATTCTTCAATGTAAA
rJMSF050C23+ TGGTAAATTAAACAAAAATCTTTAGAGGGTGCACCACTAAATTTAATTCTTCAATGTAAA
rJMFF011A09+ TGGTAAATTAAACAAAAATCTTTAGAGGGTGCACCACTAAATTTAATTCTTCAATGTAAA
____________________________________________________________
consensus TGGTAAATTAAACAAAAATCTTTAGAGGGTGCACCACTAAATTTAATTCTTCAATGTAAA
. : . : . : . : . : . :
rJMFF009M22+ ATGCAAATGTTGGACTTGGAATAAGCTTTTTGTTTAGATTCTCATAAGGGAGT
rJMSF022B03+ ATGCAAATGTTGGACTTGGAATAAGCTTTTTGTTTAGATTCTCATAAGGGAGTTGAATGA
rJMSF050C23+ ATGCAAATGTTGGACTTGGAATAAGCTTTTTGTTTAGATTCTCATAAGGGAGTTGAATGA
rJMFF011A09+ ATGCAAATGTTGGACTTGGAATAAGCTTTTTGTTTAGATTCTCATAAGGGAGTTGAATGA
____________________________________________________________
consensus ATGCAAATGTTGGACTTGGAATAAGCTTTTTGTTTAGATTCTCATAAGGGAGTTGAATGA
. : . : . : . : . : . :
rJMSF022B03+ AAAAGACTCAATGTAGAGATTCTCTCTGCTAAATTCAA
rJMSF050C23+ AAAAGACTCAATGTAGAGATTCTCTCTGCTAAATTCAA
rJMFF011A09+ AAAAGACTCAATGTAGAGATTCTCTCTGCTAAATTCAACACGGTGTACAAAATTTTGCTG
____________________________________________________________
consensus AAAAGACTCAATGTAGAGATTCTCTCTGCTAAATTCAACACGGTGTACAAAATTTTGCTG
. : . : . : . : . : . :
rJMFF011A09+ TTCAAATTTCGAAATCTGGAATATGATCATTTACAAGATTTGGGACATGAATCCCCAGAT
____________________________________________________________
consensus TTCAAATTTCGAAATCTGGAATATGATCATTTACAAGATTTGGGACATGAATCCCCAGAT