Contig 006786:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF005G10Sequence477006786 (8)477006786 (8)
JMFF035D20Sequence398006786 (8)361006786 (8)
JMFN003B14Sequence470006786 (8)
JMSF009C20Sequence386006786 (8)529009504 (6)ref|XP_011075202.1|2e-54PREDICTED: small nuclear ribonucleoprotein E-like [Sesamum indicum] ref|XP_01109
JMSF011I13Sequence378006786 (8)413006786 (8)

Alignment

This contig is upended


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JMFN003B14+                                  ATCACATCAAGAATCGAAGGAAGTGCATCAATACTAC
JMFF005G10+                                                 GAAGGAAGTGCATCAATANTAN
                      ____________________________________________________________
consensus                                    ATCACATCAAGAATCGAAGGAAGTGCATCAATACTAC
 
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JMFN003B14+           TAAAATCATACACAAATTATCATATCATATATTAAATTATTAAATAAGCAAATATTCAAA
rJMFF035D20-                                                                   AAA
JMFF005G10+           TAAAATCATACACAAATTATCATATCATATATTAAATTATTAAATAAGCAAATATTCAAA
rJMSF011I13-                                                        AGCAAATATTCAAA
JMFF035D20+                                           TAAATTATTAAATAAGCAAATATTCAAA
rJMFF005G10-             AATCATACACAAATTATCATATCATATATTAAATTATTAAATAAGCAAATATTCAAA
                      ____________________________________________________________
consensus             TAAAATCATACACAAATTATCATATCATATATTAAATTATTAAATAAGCAAATATTCAAA
 
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JMFN003B14+           ATATTAAATATCCCAGAAAGTGGAAACAGGAAACAATATCAACAAAGGCAAGACAATCCA
rJMFF035D20-          ATATTAAATATCCCAGAAAGTGGAAGCAGGAAACAATATCAACAAAGGCAAGACAATCCA
JMFF005G10+           ATATTAAATATCCCAGAAAGTGGAAGCAGGAAACAATATCAACAAAGGCAAGACAATCCA
rJMSF011I13-          ATATTAAATATCCCAGAAAGTGGAAGCAGGAAACAATATCAACAAAGGCAAGACAATCCA
JMFF035D20+           ATATTAAATATCCCAGAAAGTGGAAGCAGGAAACAATATCAACAAAGGCAAGACAATCCA
JMSF011I13+                              GTGGAAGCAGGAAACAATATCANCAAAGGCAAGACAATCCA
JMSF009C20+                      CCCAGAAAGTGGAAGCAGGAAACAATATCAACAAAGGCAAGACAATCCA
rJMFF005G10-          ATATTAAATATCCCAGAAAGTGGAAGCAGGAAACAATATCAACAAAGGCAAGACAATCCA
                      ____________________________________________________________
consensus             ATATTAAATATCCCAGAAAGTGGAAGCAGGAAACAATATCAACAAAGGCAAGACAATCCA
 
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JMFN003B14+           AAACCAAATACTCAAACAGGACCGTAGATCTCCGGCCTATTCACCTCCACCACCCTCACC
rJMFF035D20-          AAACCAAATACTCAAACAGGACCGTAGATCTCCGGCCTATTCACCTCCACCACCCTCACC
JMFF005G10+           AAACCAAATACTCAAACAGGACCGTAGATCTCCGGCCTATTCACCTCCACCACCCTCACC
rJMSF011I13-          AAACCAAATACTCAAACAGGACCGTAGATCTCCGGCCTATTCACCTCCACCACCCTCACC
JMFF035D20+           AAACCAAATACTCAAACAGGACCGTAGATCTCCGGCCTATTCACCTCCACCACCCTCACC
JMSF011I13+           AAACCAAATACTCAAACAGGACCGTAGATNTCCGGCNTATTCACCTCCACCACCCTCACC
JMSF009C20+           AAACCAAATACTCAAACAGGACCGTAGATCTCCGGCCTATTCACCTCCACCACCCTCACC
rJMFF005G10-          AAACCAAATACTCAAACAGGACCGTAGATCTCCGGCCTATTCACCTCCACCACCCTCACC
                      ____________________________________________________________
consensus             AAACCAAATACTCAAACAGGACCGTAGATCTCCGGCCTATTCACCTCCACCACCCTCACC
 
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JMFN003B14+           GCCTCCATGTCCGGCGCCGCCGTGCGAACTACCCTCAGCGGCGCCGATGCCCTCCATCTG
rJMFF035D20-          GCCTCCATGTCCGGCGCCGCCGTGCGAACTACCCTCAGCGGCGCCGATGCCCTCCATCTG
JMFF005G10+           GCCTCCATGTCCGGCGCCGCCGTGCGAACTACCCTCAGCGGCGCCGATGCCCTCCATCTG
rJMSF011I13-          GCCTCCATGTCCGGCGCCGCCGTGCGAACTACCCTCAGCGGCGCCGATGCCCTCCATCTG
JMFF035D20+           GCCTCCATGTCCGGCGCCGCCGTGCGAACTACCCTCAGCGGCGCCGATGCCCTCCATCTG
JMSF011I13+           GCCTCCATGTCCGGCGCCGCCGTGCGAACTACCCTCAGCGGCGCCGATGCCCTCCATNTG
JMSF009C20+           GCCTCCATGTCCGGCGCCGCCGTGCGAACTACCCTCAGCGGCGCCGATGCCCTCCATCTG
rJMFF005G10-          GCCTCCATGTCCGGCGCCGCCGTGCGAACTACCCTCAGCGGCGCCGATGCCCTCCATCTG
                      ____________________________________________________________
consensus             GCCTCCATGTCCGGCGCCGCCGTGCGAACTACCCTCAGCGGCGCCGATGCCCTCCATCTG
 
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JMFN003B14+           AGACACGTGGCTAGATGCCATCATCGCCGCGGCCATGCCGGCGTCGTGGGTTGCAACCCC
rJMFF035D20-          AGACACGTGGCTAGATGCCATCATCGCCGCGGCCATGCCGGCGTCGTGGGTTGCAACCCC
JMFF005G10+           AGACACGTGGCTAGATGCCATCATCGCCGCGGCCATGCCGGCGTCGTGGGTTGCAACCCC
rJMSF011I13-          AGACACGTGGCTAGATGCCATCATCGCCGCGGCCATGCCGGCGTCGTGGGTTGCAACCCC
JMFF035D20+           AGACACGTGGCTAGATGCCATCATCGCCGCGGCCATGCCGGCGTCGTGGGTTGCAACCCC
JMSF011I13+           AGACACGTGGCTAGATGCCATCATCGCCGCGGCCATGCCGGCGTCGTGGGTTGCAACCCC
JMSF009C20+           AGACACGTGGCTAGATGCCATCATCGCCGCGGCCATGCCGGCGTCGTGGGTTGCAACCCC
rJMFF005G10-          AGACACGTGGCTAGATGCCATCATCGCCGCGGCCATGCCGGCGTCGTGGGTTGCAACCCC
                      ____________________________________________________________
consensus             AGACACGTGGCTAGATGCCATCATCGCCGCGGCCATGCCGGCGTCGTGGGTTGCAACCCC
 
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JMFN003B14+           GTCATGGTTGCTGACATGATTACCGTGACCACCGGTTTGCTCATTCTTGCCGCCGCTACT
rJMFF035D20-          GTCATGGTTGCTGACATGATTACCGTGACCACCGGTTTGCTCATTCTTGCCGCCGCTACT
JMFF005G10+           GTCATGGTTGCTGACATGATTACCGTGACCACCGGTTTGCTCATTCTTGCCGCCGCTACT
rJMSF011I13-          GTCATGGTTGCTGACATGATTACCGTGACCACCGGTTTGCTCATTCTTGCCGCCGCTACT
JMFF035D20+           GTCATGGTTGCTGACATGATTACCGTGACCACCGGTTTGCTCATTCTTGCCGCCGCTACT
JMSF011I13+           GTCATGGTTGCTGACATGATTACCGTGACCACCGGTTTGCTCATTCTTGCCGCCGCTACT
JMSF009C20+           GTCATGGTTGCTGACATGATTACCGTGACCACCGGTTTGCTCATTCTTGCCGCCGCTACT
rJMFF005G10-          GTCATGGTTGCTGACATGATTACCGTGACCACCGGTTTGCTCATTCTTGCCGCCGCTACT
                      ____________________________________________________________
consensus             GTCATGGTTGCTGACATGATTACCGTGACCACCGGTTTGCTCATTCTTGCCGCCGCTACT
 
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JMFN003B14+           GGACATCGGAGTCTCCGAATCGTCTTTGGCGGCCTTGGTTTTCTTCCCACGTGGGATGCA
rJMFF035D20-          GGACATCGGAGTCTCCGAATCGTCTTTGGCGGCCTTGGTTTTCTTCCCACGTGGGAT   
JMFF005G10+           GGACATCGGAGTCTCCGAATCGTCTTTGGCGGCCTTGGTTTTCTTCCCACGTGGGATGCA
rJMSF011I13-          GGACATCGGAGTCTCCGAATCGTCTTTGGCGGCCTTGGTTTTCTTCCCACGTGGGATGCA
JMFF035D20+           GGACATCGGAGTCTCCGAATCGTCTTTGGCGGCCTTGGTTTTCTTCCCACGTGGGAT   
JMSF011I13+           GGACATCGGAGTCTCCGAATCGTCTTTGGCGGCCTTGGTTTTCTTCCCACGTGGGATGCA
JMSF009C20+           GGACATCGGAGTCTCCGAATCGTCTTTGGCGGCCTTGGTTTTCTTCCCACGTGGGATGCA
rJMFF005G10-          GGACATCGGAGTCTCCGAATCGTCTTTGGCGGCCTTGGTTTTCTTCCCACGTGGGATGCA
                      ____________________________________________________________
consensus             GGACATCGGAGTCTCCGAATCGTCTTTGGCGGCCTTGGTTTTCTTCCCACGTGGGATGCA
 
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JMFN003B14+           GAAACAGAATTTC                                               
JMFF005G10+           GAAACAGAATTTCTTGCCCTCCATTCCCATCTCT                          
rJMSF011I13-          GAAACAGAATTTCTTGCCCTCCATTCCCATCTCT                          
JMSF011I13+           GAAACAGAATTTCTTGCCCTCCATTCCCATCTCT                          
JMSF009C20+           GAAACAGAATTTCTTGCCCTCCATTCCCATCTCT                          
rJMFF005G10-          GAAACAGAATTTCTTGCCCTCCATTCCCATCTCTCTCATCGCTGTTCCAGACAGCGATGA
                      ____________________________________________________________
consensus             GAAACAGAATTTCTTGCCCTCCATTCCCATCTCTCTCATCGCTGTTCCAGACAGCGATGA