| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF005E04 | Sequence | 541 | 006784 (9) | ref|XP_006381718.1| | 1e-27 | hypothetical protein POPTR_0006s16300g [Populus trichocarpa] gb|ERP59515.1| hypo | 725 | 006784 (9) | ref|XP_009608498.1| | 6e-93 | PREDICTED: chloroplast processing peptidase-like isoform X1 [Nicotiana tomentos |
| JMFF038G14 | Sequence | 684 | 006784 (9) | ref|XP_009608498.1| | 3e-80 | PREDICTED: chloroplast processing peptidase-like isoform X1 [Nicotiana tomentos | |||||
| JMSF041C23 | Sequence | 729 | 006784 (9) | ref|XP_006381718.1| | 2e-72 | hypothetical protein POPTR_0006s16300g [Populus trichocarpa] gb|ERP59515.1| hypo | 619 | 006784 (9) | ref|XP_009608498.1| | 3e-72 | PREDICTED: chloroplast processing peptidase-like isoform X1 [Nicotiana tomentos |
| JMSF042N22 | Sequence | 715 | 006784 (9) | ref|XP_006381718.1| | 1e-76 | hypothetical protein POPTR_0006s16300g [Populus trichocarpa] gb|ERP59515.1| hypo | 802 | 006784 (9) | ref|XP_009608498.1| | 6e-106 | PREDICTED: chloroplast processing peptidase-like isoform X1 [Nicotiana tomentos |
| JMSF044O23 | Sequence | 726 | 006784 (9) | ref|XP_006381718.1| | 1e-75 | hypothetical protein POPTR_0006s16300g [Populus trichocarpa] gb|ERP59515.1| hypo | 664 | 006784 (9) | ref|XP_009608498.1| | 9e-83 | PREDICTED: chloroplast processing peptidase-like isoform X1 [Nicotiana tomentos |
This contig is upended
. : . : . : . : . : . :
JMFF005E04- GTGGGAGTTAAAGTGGTATTGTTGTTTGCGGGAGAGCAAAATT
JMSF044O23- GGTATTGTTGTTTGCGGGAGAGCAAAATT
JMSF041C23- GGTATTGTTGTTTGCGGGAGAGCAAAATT
JMSF042N22- GCGGGAGAGCAAAATT
____________________________________________________________
consensus GTGGGAGTTAAAGTGGTATTGTTGTTTGCGGGAGAGCAAAATT
. : . : . : . : . : . :
JMFF005E04- AGATTGAATTCAGCTCAGTTCAATTCAATTCAATGATAACACTAAATTGCACCCATCCTT
JMSF044O23- AGATTGAATTCAGCTCAGTTCAATTCAATTCAATGATAACACTAAATTGCACCCATCCTT
JMSF041C23- AGATTGAATTCAGCTCAGTTCAATTCAATTCAATGATAACACTAAATTGCACCCATCCTT
JMSF042N22- AGATTGAATTCAGCTCAGTTCAATTCAATTCAATGATAACACTAAATTGCACCCATCCTT
____________________________________________________________
consensus AGATTGAATTCAGCTCAGTTCAATTCAATTCAATGATAACACTAAATTGCACCCATCCTT
. : . : . : . : . : . :
JMFF005E04- TCTCTTCGATTCAAAACCCTAACTTTCCCTCTATCCACTGCTCAAAAGATCCAATTTTCT
JMSF044O23- TCTCTTCGATTCAAAACCCTAACTTTCCCTCTATCCACTGCTCAAAAGATCCAATTTTCT
JMSF041C23- TCTCTTCGATTCAAAACCCTAACTTTCCCTCTATCCACTGCTCAAAAGATCCAATTTTCT
JMSF042N22- TCTCTTCGATTCAAAACCCTAACTTTCCCTCTATCCACTGCTCAAAAGATCCAATTTTCT
____________________________________________________________
consensus TCTCTTCGATTCAAAACCCTAACTTTCCCTCTATCCACTGCTCAAAAGATCCAATTTTCT
. : . : . : . : . : . :
JMFF005E04- TGCCTCATTTATCTAATTCTTCATCTAAATCCGTCCCCTTCAAACCCCTATCCAACACTC
JMSF044O23- TGCCTCATTTATCTAATTCTTCATCTAAATCCGTCCCCTTCAAACCCCTATCCAACACTC
JMSF041C23- TGCCTCATTTATCTAATTCTTCATCTAAATCCGTCCCCTTCAAACCCCTATCCAACACTC
JMSF042N22- TGCCTCATTTATCTAATTCTTCATCTAAATCCGTCCCCTTCAAACCCCTATCCAACACTC
____________________________________________________________
consensus TGCCTCATTTATCTAATTCTTCATCTAAATCCGTCCCCTTCAAACCCCTATCCAACACTC
. : . : . : . : . : . :
JMFF005E04- CAAAGTCCACACATTTTCTGCATAGGAATTCTGGAAGCCACAGCTTTCTGACCCACAGCT
JMSF044O23- CAAAGTCCACACATTTTCTGCATAGGAATTCTGGAAGCCACAGCTTTCTGACCCACAGCT
JMSF041C23- CAAAGTCCACACATTTTCTGCATAGGAATTCTGGAAGCCACAGCTTTCTGACCCACAGCT
JMSF042N22- CAAAGTCCACACATTTTCTGCATAGGAATTCTGGAAGCCACAGCTTTCTGACCCACAGCT
____________________________________________________________
consensus CAAAGTCCACACATTTTCTGCATAGGAATTCTGGAAGCCACAGCTTTCTGACCCACAGCT
. : . : . : . : . : . :
JMFF005E04- CCAAAAGGACTCAAGAATCCGACAAGGAGACCAAACATGAGGTGGACTCTGGCGGCGGCG
JMSF044O23- CCAAAAGGACTCAAGAATCCGACAAGGAGACCAAACATGAGGTGGACTCTGGCGGCGGCG
JMSF041C23- CCAAAAGGACTCAAGAATCCGACAAGGAGACCAAACATGAGGTGGACTCTGGCGGCGGCG
JMSF042N22- CCAAAAGGACTCAAGAATCCGACAAGGAGACCAAACATGAGGTGGACTCTGGCGGCGGCG
____________________________________________________________
consensus CCAAAAGGACTCAAGAATCCGACAAGGAGACCAAACATGAGGTGGACTCTGGCGGCGGCG
. : . : . : . : . : . :
JMFF005E04- GCGGCGGGGACGGAGGGGGTGGAGGAGATGATGGGCAGGTGGAGAAGCGCGATGGGTTCT
JMSF044O23- GCGGCGGGGACGGAGGGGGTGGAGGAGATGATGGGCAGGTGGAGAAGCGCGATGGGTTCT
JMSF041C23- GCGGCGGGGACGGAGGGGGTGGAGGAGATGATGGGCAGGTGGAGAAGCGCGATGGGTTCT
JMSF042N22- GCGGCGGGGACGGAGGGGGTGGAGGAGATGATGGGCAGGTGGAGAAGCGCGATGGGTTCT
rJMSF042N22+ GAGGAGATGATGGCCAGGTGGAGAAGCGCGATGGGTTCT
____________________________________________________________
consensus GCGGCGGGGACGGAGGGGGTGGAGGAGATGATGGGCAGGTGGAGAAGCGCGATGGGTTCT
. : . : . : . : . : . :
JMFF005E04- TGCCAGAATGGCTGAATTTAACCTCGGATGATGCG-AAAACGGTTTTCGCCGCGTTGGCT
JMSF044O23- TGCCAGAATGGCTGAATTTAACCTCGGATGATGCG-AAAACGGTTTTCGCCGCGTTGGCT
JMSF041C23- TGCCAGAATGGCTGAATTTAACCTCGGATGATGCG-AAAACGGTTTTCGCCGCGTTGGCT
JMSF042N22- TGCCAGAATGGCTGAATTTAACCTCGGATGATGCG-AAAACGGTTTTCGCCGCGTTGGCT
rJMSF042N22+ TGCCAGAATGGCTGAATTTAACCTCGGATGATGCGAAAAACGGTTTTCGCCGCGTTGGCT
____________________________________________________________
consensus TGCCAGAATGGCTGAATTTAACCTCGGATGATGCG-AAAACGGTTTTCGCCGCGTTGGCT
. : . : . : . : . : . :
JMFF005E04- ATATCTCTGGCG-TTCAGGTCATTTGTGGCTGAGCCCAGATTCATACCTTCCTTATCTAT
JMSF044O23- ATATCTCTGGCG-TTCAGGTCATTTGTGGCTGAGCCCAGATTCATACCTTCCTTATCTAT
JMSF041C23- ATATCTCTGGCG-TTCAGGTCATTTGTGGCTGAGCCCAGATTCATACCTTCCTTATCTAT
JMSF042N22- ATATCTCTGGCG-TTCAGGTCATTTGTGGCTGAGCCCAGATTCATACCTTCCTTATCTAT
rJMSF044O23+ CAGATTCATACCTTCCTTATCTAT
rJMSF042N22+ ATATCTCTGGCGTTTCAGGTCATTTGTGGCTGAGCCCAGATTCATACCTTCCTTATCTAT
____________________________________________________________
consensus ATATCTCTGGCG-TTCAGGTCATTTGTGGCTGAGCCCAGATTCATACCTTCCTTATCTAT
. : . : . : . : . : . :
JMFF005E04- GTATCCCACATTTGACGTTG
JMSF044O23- GTATCCCACATTTGACGTTGGCGATCGGATTGTGGCTGAGAAGGTCTCTTATTA-TTTTA
JMSF041C23- GTATCCCACATTTGACGTTGGCGATCGGATTGTGGCTGANAAGGTCTCTTATTA-TTTTA
JMSF042N22- GTATCCCACATTTGACGTTGGCGATCGGATTGTGGCTGAGAAGGTCTCTTATTA-TTTTA
rJMSF044O23+ GTATCCCACATTTGACGTTGGCGATCGGATTGTGGCTGAGAAGGTCTCTTTATTATTTTA
rJMSF042N22+ GTATCCCACATTTGACGTTGGCGATCGGATTGTGGCTGAGAAGGTCTCTTATTA-TTTTA
rJMFF038G14+ CGGATTGNGGCTGAGAAGGTCTCTTATTATTTTTA
rJMFF005E04+ CCCACATTTGACGTTGGCGATCGGATTGTGGCTGAGAAGGTCTCTTATTA-TTTTA
____________________________________________________________
consensus GTATCCCACATTTGACGTTGGCGATCGGATTGTGGCTGAGAAGGTCTCTTATTA-TTTTA
. : . : . : . : . : . :
JMSF044O23- GAAAGCCCTGCCCTAATGATATCGTTATCTTCAAAAGTCCTCCAGTGCTTCAGGAAGTCG
JMSF041C23- NAAAGCCCTGCCCTAATGATATCGTTATCTTCAAAAGTCCTCCAGTGCTTCAGGAAGTCG
JMSF042N22- GAAAGCCCTGCCCTAATGATATCGTTATCTTCAAAAGTCCTCCAGTGCTTCAGGAAGTCG
rJMSF044O23+ GAAAGCCCTGCCCTAATGATATCGTTATCTTCAAAAGTCCTCCAGTGCTTCAGGAAGTCG
rJMSF042N22+ GAAAGCCCTGCCCTAATGATATCGTTATCTTCAAAAGTCCTCCAGTGCTTCAGGAAGTCG
rJMSF041C23+ TATCTTCAAAAGTCCTCCAGTGCTTCAGGAAGTCG
rJMFF038G14+ GAAAGCCNTGCCCTAATGATATCGTTATCTTCAAAAGTCCTCCAGTGCTTCAGGAAGTCG
rJMFF005E04+ GAAAGCCCTGCCCTAATGATATCGTTATCTTCAAAAGTCCTCCAGTGCTTCAGGAAGTCG
____________________________________________________________
consensus GAAAGCCCTGCCCTAATGATATCGTTATCTTCAAAAGTCCTCCAGTGCTTCAGGAAGTCG
. : . : . : . : . : . :
JMSF044O23- GATACACCGATGATGATGTCTTCATCAAGCGAATTGTTGCCAAGGAAGGTGATACGGTCG
JMSF041C23- GATACACCGATGATGATGTCTTCATCAAGCGAATTGTTGCCAAGGAAGGTGATACGGTCG
JMSF042N22- GATACACCGATGATGATGTCTTCATCAAGCGAATTGTTGCCAAGGAAGGTGATACGGTCG
rJMSF044O23+ GATACACCGATGATGATGTCTTCATCAAGCGAATTGTTGCCAAGGAAGGTGATACGGTCG
rJMSF042N22+ GATACACCGATGATGATGTCTTCATCAAGCGAATTGTTGCCAAGGAAGGTGATACGGTCG
rJMSF041C23+ GATACACCGATGATGATGTCTTCATCAAGCGAATTGTTGCCAAGGAAGGTGATACGGTCG
rJMFF038G14+ GATACACCGATGATGATGTCTTCATCAAGCGAATTGTTGCCAAGGAAGGTGATACGGTCG
rJMFF005E04+ GATACACCGATGATGATGTCTTCATCAAGCGAATTGTTGCCAAGGAAGGTGATACGGTCG
____________________________________________________________
consensus GATACACCGATGATGATGTCTTCATCAAGCGAATTGTTGCCAAGGAAGGTGATACGGTCG
. : . : . : . : . : . :
JMSF044O23- AGGTTCATGAAGGGAAACTGATCGTGAATGGAGTTGTCA
JMSF041C23- AGGTTCATGAANGGAAACTGATCGTGAATGGAGTTGTCA
JMSF042N22- AGGTTCATGAAGGGAAACTGATCGTGAATGGAGTTGTCAGA
rJMSF044O23+ AGGTTCATGAAGGGAAACTGATCGTGAATGGAGTTGTCAGAAACGAAGATTTTATTCTCG
rJMSF042N22+ AGGTTCATGAAGGGAAACTGATCGTGAATGGAGTTGTCAGAAACGAAGATTTTATTCTCG
rJMSF041C23+ AGGTTCATGAAGGGAAACTGATCGTGAATGGAGTTGTCAGAAACGAAGATTTTATTCTCG
rJMFF038G14+ AGGTTCATGAAGGGAAACTGATCGTGAATGGAGTTGTCAGAAACGAAGATTTTATTCTCG
rJMFF005E04+ AGGTTCATGAAGGGAAACTGATCGTGAATGGAGTTGTCAGAAACGAAGATTTTATTCTCG
____________________________________________________________
consensus AGGTTCATGAAGGGAAACTGATCGTGAATGGAGTTGTCAGAAACGAAGATTTTATTCTCG
. : . : . : . : . : . :
rJMSF044O23+ AGAAACCCAACTATGAAATGACTCCAATTCGTGTACCAGAAAATTCAGTTTTCGTGATGG
rJMSF042N22+ AGAAACCCAACTATGAAATGACTCCAATTCGTGTACCAGAAAATTCAGTTTTCGTGATGG
rJMSF041C23+ AGAAACCCAACTATGAAATGACTCCAATTCGTGTACCAGAAAATTCAGTTTTCGTGATGG
rJMFF038G14+ AGAAACCCAACTATGAAATGACTCCAATTCGTGTACCAGAAAATTCAGTTTTCGTGATGG
rJMFF005E04+ AGAAACCCAACTATGAAATGACTCCAATTCGTGTACCAGAAAATTCAGTTTTCGTGATGG
____________________________________________________________
consensus AGAAACCCAACTATGAAATGACTCCAATTCGTGTACCAGAAAATTCAGTTTTCGTGATGG
. : . : . : . : . : . :
rJMSF044O23+ GTGATAATCGGAACAACAGCTACGATTCACACGTGTGGGGTCCACTTCCTTCGAAGAACA
rJMSF042N22+ GTGATAATCGGAACAACAGCTACGATTCACACGTGTGGGGTCCACTTCCTTCGAAGAACA
rJMSF041C23+ GTGATAATCGGAACAACAGCTACGATTCACACGTGTGGGGTCCACTTCCTTCGAAGAACA
rJMFF038G14+ GTGATAATCGGAACAACAGCTACGATTCACACGTGTGGGGTCCACTTCCTTCGAAGAACA
rJMFF005E04+ GTGATAATCGGAACAACAGCTACGATTCACACGTGTGGGGTCCACTTCCTTCGAAGAACA
____________________________________________________________
consensus GTGATAATCGGAACAACAGCTACGATTCACACGTGTGGGGTCCACTTCCTTCGAAGAACA
. : . : . : . : . : . :
rJMSF044O23+ TAATCGGGAGATCTGTCTTACGGTATTGGCCACCAACAAGAATTGGCGGCACAGTTTATC
rJMSF042N22+ TAATCGGGAGATCTGTCTTACGGTATTGGCCACCAACAAGAATTGGCGGCACAGTTTATC
rJMSF041C23+ TAATCGGGAGATCTGTCTTACGGTATTGGCCACCAACAAGAATTGGCGGCACAGTTTATC
rJMFF038G14+ TAATCGGGAGATCTGTCTTACGGTATTGGCCACCAACAAGAATTGGCGGCACAGTTTATC
rJMFF005E04+ TAATCGGGAGATCTGTCTTACGGTATTGGCCACCAACAAGAATTGGCGGCACAGTTTATC
____________________________________________________________
consensus TAATCGGGAGATCTGTCTTACGGTATTGGCCACCAACAAGAATTGGCGGCACAGTTTATC
. : . : . : . : . : . :
rJMSF044O23+ CCGAAGGCTGTGCTGTTGACAAGCCCGATACTACTAGTTTGGCCGGTGAAGATACGAGTT
rJMSF042N22+ CCGAAGGCTGTGCTGTTGACAAGCCCGATACTACTAGTTTGGCCGGTGAAGATACGAGTT
rJMSF041C23+ CCGAAGGCTGTGCTGTTGACAAGCCCGATACTACTAGTTTGGCCGGTGAAGATACGAGTT
rJMFF038G14+ CCGAAGGCTGTGCTGTTGACAAGCCCGATACTACTAGTTTGGCCGGTGAAGATACGAGTT
rJMFF005E04+ CCGAAGGCTGTGCTGTTGACAAGCCCGATACTACTAGTTTGGCCGGTGAAGATACGAGTT
____________________________________________________________
consensus CCGAAGGCTGTGCTGTTGACAAGCCCGATACTACTAGTTTGGCCGGTGAAGATACGAGTT
. : . : . : . : . : . :
rJMSF044O23+ TGGCCGCCCAATAAACCCGACCCTGACAAGTTTTGACTATAGACGTGTAATCTTCGTCCA
rJMSF042N22+ TGGCCGCCCAATAAACCCGACCCTGACAAGTTTTGACTATAGACGTGTAATCTTCGTCCA
rJMSF041C23+ TGGCCGCCCAATAAACCCGACCCTGACAAGTTTTGACTATAGACGTGTAATCTTCGTCCA
rJMFF038G14+ TGGCCGCCCAATAAACCCGACCCTGACAAGTTTTGACTATAGACGTGTAATCTTCGTCCA
rJMFF005E04+ TGGCCGCCCAATAAACCCGACCCTGACAAGTTTTGACTATAGACGTGTAATCTTCGTCCA
____________________________________________________________
consensus TGGCCGCCCAATAAACCCGACCCTGACAAGTTTTGACTATAGACGTGTAATCTTCGTCCA
. : . : . : . : . : . :
rJMSF044O23+ TCCAATAGGATCGAACTTTGATAGACCTGTATACAGGGTTAAAGTTGTAGTCTTTGGGTG
rJMSF042N22+ TCCAATAGGATCGAACTTTGATAGACCTGTATACAGGGTTAAAGTTGTAGTCTTTGGGTG
rJMSF041C23+ TCCAATAGGATCGAACTTTGATAGACCTGTATACAGGGTTAAAGTTGTAGTCTTTGGGTG
rJMFF038G14+ TCCAATAGGATCGAACTTTGATAGACCTGTATACAGGGTTAAAGTTGTAGTCTTTGGGTG
rJMFF005E04+ TCCAATAGGATCGAACTTTGATAGACCTGTATACAGGGTTAAAGTTGTAGTCTTTGGGTG
____________________________________________________________
consensus TCCAATAGGATCGAACTTTGATAGACCTGTATACAGGGTTAAAGTTGTAGTCTTTGGGTG
. : . : . : . : . : . :
rJMSF044O23+ TATGTTACTTGGATCTTTAGGTATCTTTGGGTCTTGTGTG
rJMSF042N22+ TATGTTACTTGGATCTTTAGGTATCTTTGGGTCTTGTGTGT
rJMSF041C23+ TATGTTACTTGGATCTTTAGGTATCTTTGGGTCTTGTGTGTATCATGATAATGCAATAAT
rJMFF038G14+ TATGTTACTTGGATCTTTAGGTATCTTTGGGTCTTGTGTGTATCATGATAATGCAATAAT
rJMFF005E04+ TATGTTACTTGGATCTTTAGGTATCTTTGGGTCTTGTGTGTGTCATGATAATGCAATAAT
____________________________________________________________
consensus TATGTTACTTGGATCTTTAGGTATCTTTGGGTCTTGTGTGTATCATGATAATGCAATAAT
. : . : . : . : . : . :
rJMSF041C23+ TTGTGAAAGGTTTATATACCACAGAGGATGC
rJMFF038G14+ TTGTGAAAGGTTTATATACCACAGAGGATGCTGTAACATTTATATAGAA
rJMFF005E04+ TTGTGAAAGGTTTATATACCACAGAGGATGCTGTAACATTTATATAGAATGCAGACTCAT
____________________________________________________________
consensus TTGTGAAAGGTTTATATACCACAGAGGATGCTGTAACATTTATATAGAATGCAGACTCAT