Contig 006781:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF004L10Sequence477008724 (3)ref|XP_010111628.1|2e-26E3 ubiquitin-protein ligase mib1 [Morus notabilis] gb|EXC31373.1| E3 ubiquitin-p752006781 (4)ref|XP_006356028.1|9e-29PREDICTED: ankyrin-3-like [Solanum tuberosum]
JMFS048H03Sequence583006781 (4)ref|XP_006338670.1|2e-28PREDICTED: inversin-like [Solanum tuberosum]
JMSF008G02Sequence388008724 (3)ref|XP_008353450.1|194PREDICTED: uncharacterized protein LOC103417020 [Malus domestica]795006781 (4)ref|XP_006338670.1|7e-32PREDICTED: inversin-like [Solanum tuberosum]
JMSF048F17Sequence718008724 (3)ref|XP_007214996.1|2e-106hypothetical protein PRUPE_ppa002307mg [Prunus persica] gb|EMJ16195.1| hypotheti770006781 (4)ref|XP_006338670.1|6e-32PREDICTED: inversin-like [Solanum tuberosum]

Alignment

This contig is upended


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JMFS048H03-                                      TTCAGATAGAGAAACAAAAAGCAGTCCACATTG
                      ____________________________________________________________
consensus                                        TTCAGATAGAGAAACAAAAAGCAGTCCACATTG
 
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JMFS048H03-           AGAGTGAGTCAACGTGACTCAACTGTGGAAAGCCTCGGTCACAGAAGTAGTAAGCCCGGA
rJMSF048F17+                                             CGGTCACAGAAGTAGTAAGCCCGGA
rJMSF008G02+                                             CGGTCACAGAAGTAGTAAGCCCGGA
                      ____________________________________________________________
consensus             AGAGTGAGTCAACGTGACTCAACTGTGGAAAGCCTCGGTCACAGAAGTAGTAAGCCCGGA
 
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JMFS048H03-           AATTATGGCACACAACGACTGAAACGTCTCCTGCAGTGGGCTAAGATTAAGAAACGAGAT
rJMSF048F17+          AATTATGGCACACAACGACTGAAACGTCTCCTGCAGTGGGCTAAGATTAAGAAACGAGAT
rJMSF008G02+          AATTATGGCACACAACGACTGAAACGTCTCCTGCAGTGGGCTAAGATTAAGAAACGAGAT
rJMFF004L10+                                      TCCTGCAGTGGGCTAAGATTAAGAAACGAGAT
                      ____________________________________________________________
consensus             AATTATGGCACACAACGACTGAAACGTCTCCTGCAGTGGGCTAAGATTAAGAAACGAGAT
 
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JMFS048H03-           ACTGAGAGGCATAAGAAGAAAACAGAAGCAGTTGATGAAAGTCCAGTGGACAATAATTCA
rJMSF048F17+          ACTGAGAGGCATAAGAAGAAAACAGAAGCAGTTGATGAAAGTCCAGTGGACAATAATTCA
rJMSF008G02+          ACTGAGAGGCATAAGAAGAAAACAGAAGCAGTTGATGAAAGTCCAGTGGACAATAATTCA
rJMFF004L10+          ACTGAGAGGCATAAGAAGAAAACAGAAGCAGTTGATGAAAGTCCAGTGGACAATAATTCA
                      ____________________________________________________________
consensus             ACTGAGAGGCATAAGAAGAAAACAGAAGCAGTTGATGAAAGTCCAGTGGACAATAATTCA
 
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JMFS048H03-           GACGGCACACCAATCTCTCTGCGCCAGAGATTCTCCAAGCCTTCCAGTGTTCCAAACAAT
rJMSF048F17+          GACGGCACACCAATCTCTCTGCGCCAGAGATTCTCCAAGCCTTCCAGTGTTCCAAACAAT
rJMSF008G02+          GACGGCACACCAATCTCTCTGCGCCAGAGATTCTCCAAGCCTTCCAGTGTTCCAAACAAT
rJMFF004L10+          GACGGCACACCAATCTCTCTGCGCCAGAGATTCTCCAAGCCTTCCAGTGTTCCAAACAAT
                      ____________________________________________________________
consensus             GACGGCACACCAATCTCTCTGCGCCAGAGATTCTCCAAGCCTTCCAGTGTTCCAAACAAT
 
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JMFS048H03-           AACAAGCGATCACTTTGTGTTAGGAGTAACCTCCCAAGTCCAACAGCAAAGAAGAGATTT
rJMSF048F17+          AACAAGCGATCACTTTGTGTTAGGAGTAACCTCCCAAGTCCAACAGCAAAGAAGAGATTT
rJMSF008G02+          AACAAGCGATCACTTTGTGTTAGGAGTAACCTCCCAAGTCCAACAGCAAAGAAGAGATTT
rJMFF004L10+          AACAAGCGATCACTTTGTGTTAGGAGTAACCTCCCAAGTCCAACAGCAAAGAAGAGATTT
                      ____________________________________________________________
consensus             AACAAGCGATCACTTTGTGTTAGGAGTAACCTCCCAAGTCCAACAGCAAAGAAGAGATTT
 
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JMFS048H03-           GCTTCGGGGTTGATAAACGGTGTAATGCAGGCGATGAATGTCCCTCGTCGTCGCTCATCT
rJMSF048F17+          GCTTCGGGGTTGATAAACGGTGTAATGCAGGCGATGAATGTCCCTCGTCGTCGCTCATCT
rJMSF008G02+          GCTTCGGGGTTGATAAACGGTGTAATGCAGGCGATGAATGTCCCTCGTCGTCGCTCATCT
rJMFF004L10+          GCTTCGGGGTTGATAAACGGTGTAATGCAGGCGATGAATGTCCCTCGTCGTCGCTCATCT
                      ____________________________________________________________
consensus             GCTTCGGGGTTGATAAACGGTGTAATGCAGGCGATGAATGTCCCTCGTCGTCGCTCATCT
 
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JMFS048H03-           CGTTCAAGTTCGTTATCAATATCATCTCTGTCATCACTAGAGTCTTGTTCAGTAGAGAAA
rJMSF048F17+          CGTTCAAGTTCGTTATCAATATCATCTCTGTCATCACTAGAGTCTTGTTCAGTAGAGAAA
rJMSF008G02+          CGTTCAAGTTCGTTATCAATATCATCTCTGTCATCACTAGAGTCTTGTTCAGTAGAGAAA
rJMFF004L10+          CGTTCAAGTTCGTTATCAATATCATCTCTGTCATCACTAGAGTCTTGTTCAGTAGAGAAA
                      ____________________________________________________________
consensus             CGTTCAAGTTCGTTATCAATATCATCTCTGTCATCACTAGAGTCTTGTTCAGTAGAGAAA
 
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JMFS048H03-           CAAAAAGCAGTCCACATTGAGAGTGAGATTGCAGGAGGAGGTTCTTATTGTAATGAAGCT
rJMSF048F17+          CAAAAAGCAGTCCACATTGAGAGTGAGATTGCAGGAGGAGGTTCTTATTGTAATGAAGCT
rJMSF008G02+          CAAAAAGCAGTCCACATTGAGAGTGAGATTGCAGGAGGAGGTTCTTATTGTAATGAAGCT
rJMFF004L10+          CAAAAAGCAGTCCACATTGAGAGTGAGATTGCAGGAGGAGGTTCTTATTGTAATGAAGCT
                      ____________________________________________________________
consensus             CAAAAAGCAGTCCACATTGAGAGTGAGATTGCAGGAGGAGGTTCTTATTGTAATGAAGCT
 
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JMFS048H03-           GAGAGAGATCCGCAGCAGGGGAACAGAAGGTCATCTTCGTCAGTGAACCAGTACTTTTGC
rJMSF048F17+          GAGAGAGATCCGCAGCAGGGGAACAGAAGGTCATCTTCGTCAGTGAACCAGTACTTTTGC
rJMSF008G02+          GAGAGAGATCCGCAGCAGGGGAACAGAAGGTCATCTTCGTCAGTGAACCAGTACTTTTGC
rJMFF004L10+          GAGAGAGATCCGCAGCAGGGGAACAGAAGGTCATCTTCGTCAGTGAACCAGTACTTTTGC
                      ____________________________________________________________
consensus             GAGAGAGATCCGCAGCAGGGGAACAGAAGGTCATCTTCGTCAGTGAACCAGTACTTTTGC
 
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JMFS048H03-           TTTGGTGGTC                                                  
rJMSF048F17+          TTTGGTGGTCCAGGAGCAGGAGGAGGAGGAGGACAAGGACTGAAGGCTCCACCTGCTGGG
rJMSF008G02+          TTTGGTGGTCCAGGAGCAGGAGGAGGAGGAGGACAAGGACTGAAGGCTCCACCTGCTGGG
rJMFF004L10+          TTTGGTGGTCCAGGAGCAGGAGGAGGAGGAGGACAAGGACTGAAGGCTCCACCTGCTGGG
                      ____________________________________________________________
consensus             TTTGGTGGTCCAGGAGCAGGAGGAGGAGGAGGACAAGGACTGAAGGCTCCACCTGCTGGG
 
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rJMSF048F17+          CTGATGCAGCCATTTGAAATTTATGAACGCTCCGTTTTATCGACTGCTTGATGAATCCGG
rJMSF008G02+          CTGATGCAGCCATTTGAAATTTATGAACGCTCCGTTTTATCGACTGCTTGATGAATCCGG
rJMFF004L10+          CTGATGCAGCCATTTGAAATTTATGAACGCTCCGTTTTATCGACTGCTTGATGAATCCGG
                      ____________________________________________________________
consensus             CTGATGCAGCCATTTGAAATTTATGAACGCTCCGTTTTATCGACTGCTTGATGAATCCGG
 
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rJMSF048F17+          AAATGGGTGTAAGAACAAAGACACTACTTCTAATTTCTGGAGGTCAGTGAACCTTAATTA
rJMSF008G02+          AAATGGGTGTAAGAACAAAGACACTACTTCTAATTTCTGGAGGTCAGTGAACCTTAATTA
rJMFF004L10+          AAATGGGTGTAAGAACAAAGACACTACTTCTAATTTCTGGAGGTCAGTGAACCTTAATTA
                      ____________________________________________________________
consensus             AAATGGGTGTAAGAACAAAGACACTACTTCTAATTTCTGGAGGTCAGTGAACCTTAATTA
 
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rJMSF048F17+          GCTTAAATATATATATGTTGGTTATGCATGTTTGTAGCTAGCTCAGCTCCCCCCCAGTTA
rJMSF008G02+          GCTTAAATATATATATGTTGGTTATGCATGTTTGTAGCTAGCTCAGCTCCCCCCCAGTTA
rJMFF004L10+          GCTTAAATATATATATGTTGGTTATGCATGTTTGTAGCTAGCTCAGCTCCCCCCCAGTTA
                      ____________________________________________________________
consensus             GCTTAAATATATATATGTTGGTTATGCATGTTTGTAGCTAGCTCAGCTCCCCCCCAGTTA
 
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rJMSF048F17+          TTACGTTCGTACTAC                                             
rJMSF008G02+          TTACGTTCGTACTAC                                             
rJMFF004L10+          TTACGTTCGTACTACATGATGTTTAGTGACATTTGGGCGATATTAAATTGAAAAATACTA
                      ____________________________________________________________
consensus             TTACGTTCGTACTACATGATGTTTAGTGACATTTGGGCGATATTAAATTGAAAAATACTA