| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF001N11 | Sequence | 570 | 000297 (6) | dbj|BAQ15377.1| | 9e-110 | cryptochrome 1 [Ipomoea nil] | 729 | 006767 (7) | dbj|BAQ15377.1| | 8e-43 | cryptochrome 1 [Ipomoea nil] |
| JMFF034D21 | Sequence | 566 | 000297 (6) | dbj|BAQ15377.1| | 6e-109 | cryptochrome 1 [Ipomoea nil] | 546 | 006767 (7) | dbj|BAF95170.1| | 5e-30 | cryptochrome 1 [Ipomoea nil] |
| JMFF039J11 | Sequence | 594 | 000480 (5) | dbj|BAQ15377.1| | 2e-136 | cryptochrome 1 [Ipomoea nil] | 681 | 006767 (7) | dbj|BAQ15377.1| | 8e-55 | cryptochrome 1 [Ipomoea nil] |
| JMFF045M01 | Sequence | 605 | 000480 (5) | dbj|BAN14730.1| | 1e-141 | cryptochrome 1, partial [Lotus japonicus] | 587 | 006767 (7) | dbj|BAF95170.1| | 3e-14 | cryptochrome 1 [Ipomoea nil] |
| JMFF051G12 | Sequence | 590 | 000297 (6) | dbj|BAQ15377.1| | 2e-86 | cryptochrome 1 [Ipomoea nil] | 498 | 006767 (7) | dbj|BAF95170.1| | 6e-24 | cryptochrome 1 [Ipomoea nil] |
| JMSF021I15 | Sequence | 670 | 000297 (6) | dbj|BAQ15377.1| | 1e-119 | cryptochrome 1 [Ipomoea nil] | 813 | 006767 (7) | dbj|BAQ15377.1| | 3e-88 | cryptochrome 1 [Ipomoea nil] |
| JMSF022E02 | Sequence | 672 | 000297 (6) | dbj|BAQ15377.1| | 3e-120 | cryptochrome 1 [Ipomoea nil] | 758 | 006767 (7) | dbj|BAQ15377.1| | 7e-78 | cryptochrome 1 [Ipomoea nil] |
This contig is upended
. : . : . : . : . : . :
rJMSF021I15+ CCTCAAGACATGCAAATGGAGACGAACCACGAACCAGTTAGGA
____________________________________________________________
consensus CCTCAAGACATGCAAATGGAGACGAACCACGAACCAGTTAGGA
. : . : . : . : . : . :
rJMSF021I15+ ACAACAACAACAATCCTGCCACTATCCGGGCTGATGAAGACCAGATGGTTCCCAGCATTA
rJMSF022E02+ ATCCTGCCACTATCCGGGCTGATGAAGACCAGATGGTTCCCAGCATTA
____________________________________________________________
consensus ACAACAACAACAATCCTGCCACTATCCGGGCTGATGAAGACCAGATGGTTCCCAGCATTA
. : . : . : . : . : . :
rJMSF021I15+ CTTCCTTTTTCAGGGACGAAGAAGAGAGCTCGATGGACCTCACAAA-CCCGGGCGTGGAT
rJMFF039J11+ TTTCAGGGACGAAGAAGAGAGCTCGATGGACCTCACAAACCCCGGGCGTGGAT
rJMSF022E02+ CTTCCTTTTTCAGGGACGAAGAAGAGAGCTCGATGGACCTCACAAA-CCCGGGCGTGGAT
rJMFF001N11+ GGGCGTGGAT
____________________________________________________________
consensus CTTCCTTTTTCAGGGACGAAGAAGAGAGCTCGATGGACCTCACAAA-CCCGGGCGTGGAT
. : . : . : . : . : . :
rJMSF021I15+ AGCAGAGCCCAAGTGCCAATAACTGCAGCTCAAATGAGGAACAATACAGGCCAAACTGTT
rJMFF039J11+ AGCAGAGCCCAAGTGCCAATAACTGCAGCTCAAATGAGGAACAATACAGGCCAAACTGTT
rJMSF022E02+ AGCAGAGCCCAAGTGCCAATAACTGCAGCTCAAATGAGGAACAATACAGGCCAAACTGTT
rJMFF001N11+ AGCAGAGCCCAAGTGCCAATAACTGCAGCTCAAATGAGGAACAATACAGGCCAAACTGTT
____________________________________________________________
consensus AGCAGAGCCCAAGTGCCAATAACTGCAGCTCAAATGAGGAACAATACAGGCCAAACTGTT
. : . : . : . : . : . :
rJMSF021I15+ ATCCAAGCAGCTCGAAACATCAACACCAACGCCCCGCCACAACCTAATATACGCAGAAGG
rJMFF039J11+ ATCCAAGCAGCTCGAAACATCAACACCAACGCCCCGCCACAACCTAATATACGCAGAAGG
rJMSF022E02+ ATCCAAGCAGCTCGAAACATCAACACCAACGCCCCGCCACAACCTAATATACGCAGAAGG
rJMFF045M01+ TATACGCAGAAGG
rJMFF001N11+ ATCCAAGCAGCTCGAAACATCAACACCAACGCCCCGCCACAACCTAATATACGCAGAAGG
____________________________________________________________
consensus ATCCAAGCAGCTCGAAACATCAACACCAACGCCCCGCCACAACCTAATATACGCAGAAGG
. : . : . : . : . : . :
rJMSF021I15+ AATTCTGAAGACTCCACTGCTGATTCTTCCAACAGCAGCCGGGGCGTCGTCCCAGTATGG
rJMFF039J11+ AATTCTGAAGACTCCACTGCTGATTCTTCCAACAGCAGCCGGGGCGTCGTCCCAGTATGG
rJMFF051G12+ TCGTCCCAGTATGG
rJMSF022E02+ AATTCTGAAGACTCCACTGCTGATTCTTCCAACAGCAGCCGGGGCGTCGTCCCAGTATGG
rJMFF045M01+ AATTCTGAAGACTCCACTGCTGATTCTTCCAACAGCAGCCGGGGCGTCGTCCCAGTATGG
rJMFF034D21+ TTCCAACAGCAGCCGGGGCGTCGTCCCAGTATGG
rJMFF001N11+ AATTCTGAAGACTCCACTGCTGATTCTTCCAACAGCAGCCGGGGCGTCGTCCCAGTATGG
____________________________________________________________
consensus AATTCTGAAGACTCCACTGCTGATTCTTCCAACAGCAGCCGGGGCGTCGTCCCAGTATGG
. : . : . : . : . : . :
rJMSF021I15+ TCCCCCTCGAGCACGAATTACTCGGATCAATTTGCTGGCGATGACAACACCA-CCATTGG
rJMFF039J11+ TCCCCCTCGAGCACGAATTACTCGGATCAATTTGCTGGCGATGACAACACCA-CCATTGG
rJMFF051G12+ TCCCCCTCGAGCACGAATTACTCGGATCAATTTGCTGGCGATGACAACACCA-CCATTGG
rJMSF022E02+ TCCCCCTCGAGCACGAATTACTCGGATCAATTTGCTGGCGATGACAACACCA-CCATTGG
rJMFF045M01+ TCCCCCTCGAGCACGAATTACTCGGATCAATAT-CTGGCGATGACAACACCA-CCATTGG
rJMFF034D21+ TCCCCCTCGAGCACGAATTACTCGGATCAATTTGCTGGCGATGACAACACCA-CCATTGG
rJMFF001N11+ TCCCCCTCGAGCACGAATTACTCGGATCAATTTGCTGGCGATGACAACACCACCCATTGG
____________________________________________________________
consensus TCCCCCTCGAGCACGAATTACTCGGATCAATTTGCTGGCGATGACAACACCA-CCATTGG
. : . : . : . : . : . :
rJMSF021I15+ CACCACCAGTACCTCTTATTTGCAAAGGCATCAACAGCCTCATCAGCTAATGAACTGGCA
rJMFF039J11+ CACCACCAGTACCTCTTATTTGCAAAGGCATCAACAGCCTCATCAGCTAATGAACTGGCA
rJMFF051G12+ CACCACCAGTACCTCTTATTTGCAAAGGCATCAACAGCCTCATCAGCTAATGAACTGGCA
rJMSF022E02+ CACCACCAGTACCTCTTATTTGCAAAGGCATCAACAGCCTCATCAGCTAATGAACTGGCA
rJMFF045M01+ CACCACCAGTACCTCTTATTTGCAAAGGCATCAACAGCCTCATCAGCTAATGAACTGGCA
rJMFF034D21+ CACCACCAGTACCTCTTATTTGCAAAGGCATCAACAGCCTCATCAGCTAATGAACTGGCA
rJMFF001N11+ CACCACCAGTACCTCTTATTTGCAAAGGCATCAACAGCCTCATCAGCTAATGAACTGGCA
____________________________________________________________
consensus CACCACCAGTACCTCTTATTTGCAAAGGCATCAACAGCCTCATCAGCTAATGAACTGGCA
. : . : . : . : . : . :
rJMSF021I15+ ACGGTTG-CCCCAGACAG---GGTGATTGGTTTACGCGTGGCACGACAAAAATCCAGGAA
rJMFF039J11+ ACGGTTG-CCCCAGACAG---GGTGATTGGTTTACGCGTGGCACGACAAAAATCCAGGAA
rJMFF051G12+ ACGGTTGCCCCCAGACAG---GGTGATTGGTTTACGCGTGGCACGACAAAAATCCAGGAA
rJMSF022E02+ ACGGTTG-CCCCAGACAG---GGTGATTGGTTTACGCGTGGCACGACAAAAATCCAGGAA
rJMFF045M01+ ACGGTTG-CCCCAGACAGGCAGGTGATTGGTTTACGCGTGGCACGACAAAAATCCAGGAA
rJMFF034D21+ ACGGTTG-CCCCAGACAGGCAGGTGATTGGTTTACGCGTGGCACGACAAAAATCCAGGAA
rJMFF001N11+ ACGGTTG-CCCCAGACAGGCAGGTGATTGGTTTACGCGTGGCACGACAAAAATCCAGGAA
____________________________________________________________
consensus ACGGTTG-CCCCAGACAG---GGTGATTGGTTTACGCGTGGCACGACAAAAATCCAGGAA
. : . : . : . : . : . :
rJMSF021I15+ TGGGAGAATCAAGATATCGGGATAACAAGGTCATTCAGACAATGAATCTGCACGCACGCA
rJMFF039J11+ TGGGAGAATCAAGATATCGGGATAACAAGGTCATTCAGACAATGAATCTGCACGCACGCA
rJMFF051G12+ TGGGAGAATCAAGATATCGGGATAACAAGGTCATTCAGACAATGAATCTGCACGCACGCA
rJMSF022E02+ TGGGAGAATCAAGATATCGGGATAACAAGGTCATTCAGACAATGAATCTGCACGCACGCA
rJMFF045M01+ TGGGAGAATCAAGATATCGGGATAACAAGGTCATTCAGACAATGAATCTGCACGCACGCA
rJMFF034D21+ TGGGAGAATCAAGATATCGGGATAACAAGGTCATTCAGACAATGAATCTGCACGCACGCA
rJMFF001N11+ TGGGAGAATCAAGATATCGGGATAACAAGGTCATTCAGACAATGAATCTGCACGCACGCA
____________________________________________________________
consensus TGGGAGAATCAAGATATCGGGATAACAAGGTCATTCAGACAATGAATCTGCACGCACGCA
. : . : . : . : . : . :
rJMSF021I15+ GTGGATCATGTACTGTACTACTAAGTCTAGCCTGATCAGAACAGTCAATTTGTGTGTATA
rJMFF039J11+ GTGGATCATGTACTGTACTACTAAGTCTAGCCTGATCAGAACAGTCAATTTGTGCGTATA
rJMFF051G12+ GTGGATCATGTACTGTACTACTAAGTCTAGCCTGATCAGAACAGTCAATTTGTGTGTATA
rJMSF022E02+ GTGGATCATGTACTGTACTACTAAGTCTAGCCTGATCAGAACAGTCAATTTGTGTGTATA
rJMFF045M01+ GTGGATCATGTACTGTACTACTAAGTCTAGCCTGATCAGAACAGTCAATTTGTGTGTATA
rJMFF034D21+ GTGGATCATGTACTGTACTACTAAGTCTAGCCTGATCAGAACAGTCAATTTGTGTGTATA
rJMFF001N11+ GTGGATCATGTACTGTACTACTAAGTCTAGCCTGATCAGAACAGTCAATTTGTGTGTATA
____________________________________________________________
consensus GTGGATCATGTACTGTACTACTAAGTCTAGCCTGATCAGAACAGTCAATTTGTGTGTATA
. : . : . : . : . : . :
rJMSF021I15+ TTAGCGGATTGGATTGGATCAGGTGATTCTTTTTCGTGTTTCTGGTTCCTGTTGTATCAT
rJMFF039J11+ TTAGCGGATTGGATTGGATCAGGTGATTCTTTTTCGTGTTTCTGGTTCCTGTTGTATCAT
rJMFF051G12+ TTAGCGGATTGGATTGGATCAGGTGATTCTTTTTCGTGTTTCTGGTTCCTGTTGTATCAT
rJMSF022E02+ TTAGCGGATTGGATTGGATCAGGTGATTCTTTTTCGTGTTTCTGGTTCCTGTTGTATCAT
rJMFF045M01+ TTAGCGGATTGGATTGGATCAGGTGATTCTTTTTCGTGTTTCTGGTTCCTGTTGTATCAT
rJMFF034D21+ TTAGCGGATTGGATTGGATCAGGTGATTCTTTTTCGTGTTTCTGGTTCCTGTTGTATCAT
rJMFF001N11+ TTAGCGGATTGGATTGGATCAGGTGATTCTTTTTCGTGTTTCTGGTTCCTGTTGTATCAT
____________________________________________________________
consensus TTAGCGGATTGGATTGGATCAGGTGATTCTTTTTCGTGTTTCTGGTTCCTGTTGTATCAT
. : . : . : . : . : . :
rJMSF021I15+ ATCGTAGGGGTTCTACTGCATAGTATATATACACATTCTATAAGGCCAAATAATCATCAA
rJMFF039J11+ ATCGTAGGGGTTCTACTGCATAGTATATATACACATTCTATAAGGCCAAATAATCATCAA
rJMFF051G12+ ATCGTAGGGGTTCTACTGCATAGTATATATACACATTCTATAAGGCCAAATAATCATCAA
rJMSF022E02+ ATCGTAGGGGTTCTACTGCATAGTATATATACACATTCTATAAGGCCAAATAATCATCAA
rJMFF045M01+ ATCGTAGGGGTTCTACTGCATAGTATATATACACATTCTATAAGGCCAAATAATCATCAA
rJMFF034D21+ ATCGTAGGGGTTCTACTGCATAGTATATATACACATTCTATAAGGCCAAATAATCATCAA
rJMFF001N11+ ATCGTAGGGGTTCTACTGCATAGTATATATACACATTCTATAAGGCCAAATAATCATCAA
____________________________________________________________
consensus ATCGTAGGGGTTCTACTGCATAGTATATATACACATTCTATAAGGCCAAATAATCATCAA
. : . : . : . : . : . :
rJMSF021I15+ GTTGGCTGGGAGTTCCTGTAATAAACTCAGGTTTGTGCCTCTTCATTTT
rJMFF039J11+ GTTGGCTGGGAGTTCCTGTAATAAACTCAGGTT
rJMFF051G12+ GTTGGCTGGGAGTTCCTGTAATAAACTCAGGTTTGTGCCTC
rJMSF022E02+ GTTGGCTGGGAGTTCCTGTAATAAACTCAGGTTTGTGCCTCTTCATTTT
rJMFF045M01+ GTTGGCTGGGAGTTCCTGTAATAAACTCAGGTTTGTGCCTCTTCATTTTTGGCTTGATTG
rJMFF034D21+ GTTGGCTGGGAGTTCCTGTAATAAACTCAGGTTTGTGCCTCTTCATTTTTGGCTTGATTG
rJMFF001N11+ GTTGGCTGGGAGTTCCTGTAATAAACTCAGGTTTGTGCCTCTTCATTTTTGGCTTGATTG
____________________________________________________________
consensus GTTGGCTGGGAGTTCCTGTAATAAACTCAGGTTTGTGCCTCTTCATTTTTGGCTTGATTG
. : . : . : . : . : . :
rJMFF045M01+ CATATGTTATTATGTGATCTTCTTTATCATA
rJMFF034D21+ CATATGTTATTATGTGATCTTCTTTATCATA
rJMFF001N11+ CATATGTTATTATGTGATCTTCTTTATCATACAATCATGGGGTTTATAGATTAGGAACAA
____________________________________________________________
consensus CATATGTTATTATGTGATCTTCTTTATCATACAATCATGGGGTTTATAGATTAGGAACAA