Contig 006760:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS143F05Sequence641006760 (8)ref|XP_006342010.1|6e-94PREDICTED: protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplasti
JMSF003F24Sequence388006760 (8)ref|XP_006342009.1|3e-27PREDICTED: protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplasti680004207 (7)ref|XP_011083887.1|4e-73PREDICTED: protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplasti
JMSF010A03Sequence267006760 (8)ref|XP_009767345.1|1e-17PREDICTED: protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplasti807004207 (7)ref|XP_009767345.1|2e-93PREDICTED: protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplasti
JMSF010K08Sequence386006760 (8)ref|XP_006342009.1|4e-27PREDICTED: protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplasti766004207 (7)gb|EYU38854.1|1e-89hypothetical protein MIMGU_mgv1a001581mg [Erythranthe guttata]
JMSF015H19Sequence227006760 (8)ref|XP_009767345.1|1e-11PREDICTED: protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplasti779004207 (7)gb|EYU38854.1|2e-90hypothetical protein MIMGU_mgv1a001581mg [Erythranthe guttata]
JMSF038F12Sequence643006760 (8)ref|XP_006342010.1|9e-84PREDICTED: protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplasti929004207 (7)gb|EYU38854.1|1e-115hypothetical protein MIMGU_mgv1a001581mg [Erythranthe guttata]
JMSF050P01Sequence564006760 (8)ref|XP_006342009.1|5e-70PREDICTED: protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplasti797004207 (7)gb|EYU38854.1|5e-90hypothetical protein MIMGU_mgv1a001581mg [Erythranthe guttata]
JMSF052J20Sequence683006760 (8)ref|XP_006342009.1|9e-90PREDICTED: protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplasti863004207 (7)ref|XP_009767345.1|3e-92PREDICTED: protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplasti

Alignment

This contig is upended


. : . : . : . : . : . :
JMFS143F05+ TAAGACTAAATCTTGCTTGAATGTCTTAGAAAGACGCTCTTTCAGCAAAC
JMSF052J20+ AGAAAGACGCTCTTTCAGCAAAC
                      ____________________________________________________________
consensus TAAGACTAAATCTTGCTTGAATGTCTTAGAAAGACGCTCTTTCAGCAAAC
 
. : . : . : . : . : . :
JMFS143F05+ TTTCCCCAATCTGAAGAACCAGTTCAGTATCGCCTGATTCTTGCAACACGCACAATGCTC
JMSF038F12+ AATCTGAAGAACCAGTTCAGTATCGCCTGATTCTTGCAACACGCACAATGCTC
JMSF052J20+ TTTCCCCAATCTGAAGAACCAGTTCAGTATCGCCTGATTCTTGCAACACGCACAATGCTC
                      ____________________________________________________________
consensus TTTCCCCAATCTGAAGAACCAGTTCAGTATCGCCTGATTCTTGCAACACGCACAATGCTC
 
. : . : . : . : . : . :
JMFS143F05+ CTGGAACCTTATCCCATGGAACTTGAGTGAGAAGGGTATCGAACTCATGATTTGCAAGAC
JMSF050P01+ CTTATCCCATGGAACTTGAGTGAGAAGGGTATCGAACTCATGATTTGCAAGAC
JMSF038F12+ CTGGAACCTTATCCCATGGAACTTGAGTGAGAAGGGTATCGAACTCATGATTTGCAAGAC
JMSF052J20+ CTGGAACCTTATCCCATGGAACTTGAGTGAGAAGGGTATCGAACTCATGATTTGCAAGAC
                      ____________________________________________________________
consensus CTGGAACCTTATCCCATGGAACTTGAGTGAGAAGGGTATCGAACTCATGATTTGCAAGAC
 
. : . : . : . : . : . :
JMFS143F05+ CTTGGTTGTAATCTCGGCGTGAGCTAGGGTCAGCAAGGGTTTCACAAGCAGCTTGAAGAA
JMSF050P01+ CTTGGTTGTAATCTCGGCGTGAGCTAGGGTCAGCAAGGGTTTCACAAGCAGCTTGAAGAA
JMSF038F12+ CTTGGTTGTAATCTCGGCGTGAGCTAGGGTCAGCAAGGGTTTCACAAGCAGCTTGAAGAA
JMSF052J20+ CTTGGTTGTAATCTCGGCGTGAGCTAGGGTCAGCAAGGGTTTCACAAGCAGCTTGAAGAA
                      ____________________________________________________________
consensus CTTGGTTGTAATCTCGGCGTGAGCTAGGGTCAGCAAGGGTTTCACAAGCAGCTTGAAGAA
 
. : . : . : . : . : . :
JMFS143F05+ TCTGGCGTCGGCTAATCAGAGCTTCATGGCTATATCCATATTGCGGCGGCTTCGAAATGC
JMSF050P01+ TCTGGCGTCGGCTAATCAGAGCTTCATGGCTATATCCATATTGCGGCGGATTCGAAATGC
JMSF038F12+ TCTGGCGTCGGCTAATCAGAGCTTCATGGCTATATCCATATTGCGGCGGCTTCGAAATGC
JMSF052J20+ TCTGGCGTCGGCTAATCAGAGCTTCATGGCTATATCCATATTGCGGCGGCTTCGAAATGC
                      ____________________________________________________________
consensus TCTGGCGTCGGCTAATCAGAGCTTCATGGCTATATCCATATTGCGGCGGCTTCGAAATGC
 
. : . : . : . : . : . :
JMFS143F05+ GTGCCTCATAGGCTCTTCTTATACCGTCTCCTAGGAAGTGAGGTTCGGCGCCGAGCACTC
JMSF050P01+ GTGCCTCATAGGCTCTTCTTATACCGTCTCCTAGGAAGTGAGGTTCGGCGCCGAGCACTC
JMSF038F12+ GTGCCTCATAGGCTCTTCTTATACCGTCTCCTAGGAAGTGAGGTTCGGCGCCGAGCACTC
JMSF010K08+ AGGAAGTGAGGTTCGGCGCCGAGCACTC
JMSF003F24+ AGGAAGTGAGNTTCGGCGCCGAGCACTC
JMSF052J20+ GTGCCTCATAGGCTCTTCTTATACCGTCTCCTAGGAAGTGAGGTTCGGCGCCGAGCACTC
                      ____________________________________________________________
consensus GTGCCTCATAGGCTCTTCTTATACCGTCTCCTAGGAAGTGAGGTTCGGCGCCGAGCACTC
 
. : . : . : . : . : . :
JMFS143F05+ TGTAGAAGTCTATGGGCAAGGAGACATTGCGCTCCAGAATGTCAAGCGGGGGAGTGAGAG
JMSF050P01+ TGTAGAAGTCTATGGGCAAGGAGACATTGCGCTCCAGAATGTCAAGCGGGGGAGTGAGAG
JMSF038F12+ TGTAGAAGTCTATGGGCAAGGAGACATTGCGCTCCAGAATGTCAAGCGGGGGAGTGAGAG
JMSF010K08+ TGTAGAAGTCTATGGGCAAGGAGACATTGCGCTCCAGAATGTCAAGCGGGGGAGTGAGAG
JMSF003F24+ TGTAGAAGTCTATGGGCAAGGAGACATTGCGCTCCAGAATGTCAAGCGGGGGAGTGAGAG
JMSF052J20+ TGTAGAAGTCTATGGGCAAGGAGACATTGCGCTCCAGAATGTCAAGCGGGGGAGTGAGAG
                      ____________________________________________________________
consensus TGTAGAAGTCTATGGGCAAGGAGACATTGCGCTCCAGAATGTCAAGCGGGGGAGTGAGAG
 
. : . : . : . : . : . :
JMFS143F05+ TAGCGGTGGTGCTTTTATGGTCCGGAGGGTCGGGAGTAGAAGTGGAAGGAAGGAATTGGA
JMSF050P01+ TAGCGGTGGTGCTTTTATGGTCCGGAGGGTCGGGAGTAGAAGTGGAAGGAAGGAATTGGA
JMSF038F12+ TAGCGGTGGTGCTTTTATGGTCCGGAGGGTCGGGAGTAGAAGTGGAAGGAAGGAATTGGA
JMSF010K08+ TAGCGGTGGTGCTTTTATGGTCCGGAGGGTCGGGAGTAGAAGTGGAAGGAAGGAATTGGA
JMSF003F24+ TAGCGGTGGTGCTTTTATGGTCCGGAGGGTCGGGAGTAGAAGTGGAAGGAAGGAATTGGA
JMSF010A03+ GGGAGTAGAAGTGGAAGGAAGGAATTGGA
JMSF052J20+ TAGCGGTGGTGCTTTTATGGTCCGGAGGGTCGGGAGTAGAAGTGGAAGGAAGGAATTGGA
                      ____________________________________________________________
consensus TAGCGGTGGTGCTTTTATGGTCCGGAGGGTCGGGAGTAGAAGTGGAAGGAAGGAATTGGA
 
. : . : . : . : . : . :
JMFS143F05+ AGTCGGCAAATAGGCGATCGGCCCATTTGCTGGCAGAGAAGGTGGTGGGTGCGCTGGTAG
JMSF050P01+ AGTCGGCAAATAGGCGATCGGCCCATTTGCTGGCAGAGAAGGTGGTGGGTGCGCTGCTAG
JMSF038F12+ AGTCGGCAAATAGGCGATCGGCCCATTTGCTGGCAGAGAAGGTGGTGGGTGCGCTGCTAG
JMSF010K08+ AGTCGGCAAATAGGCGATCGGCCCATTTGCTGGCAGAGAAGGTGGTGGGTGCGCTGCTAG
JMSF003F24+ AGTCGGCAAATAGGCGATCGGCCCATTTGCTGGCAGAGAAGGTGGTGGGTGCGCTGCTAG
JMSF010A03+ AGTCGGCAAATAGGCGATCGGCCCATTTGCTGGCAGAGAAGGTGGTGGGTGCGCTGCTAG
JMSF015H19+ AGGCGATCGTCCCATTTGCTGGCAGAGAAGGTGGTGGGTGCGCTGCTAG
JMSF052J20+ AGTCGGCAAATAGGCGATCGGCCCATTTGCTGGCAGAGAAGGTGGTGGGTGCGCTGCTAG
                      ____________________________________________________________
consensus AGTCGGCAAATAGGCGATCGGCCCATTTGCTGGCAGAGAAGGTGGTGGGTGCGCTGCTAG
 
. : . : . : . : . : . :
JMFS143F05+ CTCCGCCACTGACGGCGGAGAAGCGGTGGAGCCTTCTAGCGTTAGGCGGTTGCAGCGGTG
JMSF050P01+ CTCCGCCACTGACGGCGGAGAAGCGGTGGAGCCTTCTAGCGTTAGGCGGTTGCAGCGGTG
JMSF038F12+ CTCCGCCACTGACGGCGGAGAAGCGGTGGAGCCTTCTAGCGTTAGGCGGTTGCAGCGGTG
JMSF010K08+ CTCCGCCACTGACGGCGGAGAAGCGGTGGAGCCTTCTAGCGTTAGGCGGTTGCAGCGGTG
JMSF003F24+ CTCCGCCACTGACGGCGGAGAAGCGGTGGAGCCTTCTAGCGTTAGGCGGTTGCAGCGGTG
JMSF010A03+ CTCCGCCACTGACGGCGGAGAAGCGGTGGAGCCTTCTAGCGTTAGGCGGTTGCAGCGGTG
JMSF015H19+ CTCCGCCACTGACGGCGGAGAAGCGGTGGAGCNTTCTAGCGTTAGGCGGTTGCAGCGGTG
JMSF052J20+ CTCCGCCACTGACGGCGGAGAAGCGGTGGAGCCTTCTAGCGTTAGGCGGTTGCAGCGGTG
                      ____________________________________________________________
consensus CTCCGCCACTGACGGCGGAGAAGCGGTGGAGCCTTCTAGCGTTAGGCGGTTGCAGCGGTG
 
. : . : . : . : . : . :
JMFS143F05+ GCGCAAGCCTCGGACTGCAGATTCCCAAGTTTAGATGCGTTAAAGCATCCA
JMSF050P01+ GCGCAAGCCTCGGACTGCAGATTCCCAAGTTTAGATGCGTTAAAGCATCCATTTTGATGC
JMSF038F12+ GCGCAAGCCTCGGACTGCAGATTCCCAAGTTTAGATGCGTTAAAGCATCCATTTTGATGC
JMSF010K08+ GCGCAAGCCTCGGACTGCAGATTCCCAAGTTTAGATGCGTTAAAGCATCCATTTTGATGC
JMSF003F24+ GCGCAAGCCTCGGACTGCAGATTCCCAAGTTTAGATGCGTTAAAGCATCCATTTTGATGC
JMSF010A03+ GCGCAAGCCTCGGACTGCAGATTCCCAAGTTTAGATGCGTTAAAGCATCCATTTTGATGC
JMSF015H19+ GCGCAAGCCTCGGACTGCAGATTCCCAAGTTTAGATGCGTTAAAGCATCCATTTTGATGC
JMSF052J20+ GCGCAAGCCTCGGACTGCAGATTCCCAAGTTTAGATGCGTTAAAGCATCCATTTTGATGC
                      ____________________________________________________________
consensus GCGCAAGCCTCGGACTGCAGATTCCCAAGTTTAGATGCGTTAAAGCATCCATTTTGATGC
 
. : . : . : . : . : . :
JMSF050P01+ GACTGAGCTCACAATTNGAAACCAGACAGT
JMSF038F12+ GACTGAGCTCACAATTCGAAACCAGACAGTAGAGATTTTTTGAGATGAT
JMSF010K08+ GACTGAGCTCACAATTCGAAACCAGACAGTAGAGATTTTTTGAGATGATGGTGGCTCC
JMSF003F24+ GACTGAGCTCACAATTCGAAACCAGACAGTAGAGATTTTTTGAGATGATGGTGGCTCC
JMSF010A03+ GACTGAGCTCACAATTCGAAACCAGACAGTAGAGATTTTTTGAGATGATGGTGGC
JMSF015H19+ GACTGAGCTCACAATTCGAAACCAGACAGTAGAGATTTTNTGAGATGATGGTGGCTCC
JMSF052J20+ GACTGAGCTCACAATTCGAAACCAGACAGTAGAGATTTTTTGAGATGATGGTGGCTCCTC
                      ____________________________________________________________
consensus GACTGAGCTCACAATTCGAAACCAGACAGTAGAGATTTTTTGAGATGATGGTGGCTCCTC