| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF028L16 | Sequence | 518 | 006751 (4) | ref|XP_009370217.1| | 1e-78 | PREDICTED: ataxin-3 homolog isoform X1 [Pyrus x bretschneideri] | 527 | 010956 (3) | ref|XP_006349474.1| | 4e-19 | PREDICTED: ataxin-3 homolog [Solanum tuberosum] |
| JMFS168D07 | Sequence | 614 | 006751 (4) | ref|XP_008442472.1| | 3e-42 | PREDICTED: ataxin-3 homolog [Cucumis melo] | |||||
| JMSF009I04 | Sequence | 258 | 006751 (4) | 786 | 009906 (2) | ref|XP_009778466.1| | 6e-77 | PREDICTED: constitutive photomorphogenesis protein 10 [Nicotiana sylvestris] | |||
| JMSF051J02 | Sequence | 600 | 006751 (4) | ref|XP_004137739.1| | 3e-41 | PREDICTED: ataxin-3 homolog [Cucumis sativus] ref|XP_004156591.1| PREDICTED: ata | 715 | 010956 (3) | ref|XP_011094962.1| | 3e-85 | PREDICTED: ataxin-3 homolog [Sesamum indicum] |
This contig is upended
. : . : . : . : . : . :
JMFS168D07+ ACGAAATAATACAGTTTAAAT
____________________________________________________________
consensus ACGAAATAATACAGTTTAAAT
. : . : . : . : . : . :
JMFS168D07+ CTTTTGTCCAGTATTAACTTTCCAATCATTCAAAATAAAGATTATACCAACATTTATTTA
____________________________________________________________
consensus CTTTTGTCCAGTATTAACTTTCCAATCATTCAAAATAAAGATTATACCAACATTTATTTA
. : . : . : . : . : . :
JMFS168D07+ TCCTCAACACATATATAGAACAGACAATTACTCGAATTGAAGCAAAACACACATACAAGT
JMSF051J02+ TCCTCAACACATATATAGAACAGACAATTACTCGAATTGAAGCAAAACACACATACAAGT
____________________________________________________________
consensus TCCTCAACACATATATAGAACAGACAATTACTCGAATTGAAGCAAAACACACATACAAGT
. : . : . : . : . : . :
JMFS168D07+ ACCAGCGGCAGCCACAAAAGTTCAATCATTTTATAGGGGTGAATATAAAACCTAACAAAA
JMSF051J02+ ACCAGCGGCAGCCACAAAAGTTCAATCATTTTATAGGGGTGAATATAAAACCTAACAAAA
____________________________________________________________
consensus ACCAGCGGCAGCCACAAAAGTTCAATCATTTTATAGGGGTGAATATAAAACCTAACAAAA
. : . : . : . : . : . :
JMFS168D07+ TCGAACTACTCATTCAAATATATCAGTGGCTGATATAAATATATACTAAAAGAGTGCGAA
JMSF051J02+ TCGAACTACTCATTCAAATATATCAGTGGCTGATATAAATATATACTAAAAGAGTGCGAA
____________________________________________________________
consensus TCGAACTACTCATTCAAATATATCAGTGGCTGATATAAATATATACTAAAAGAGTGCGAA
. : . : . : . : . : . :
JMFS168D07+ GACTGAGGGTAATAGAACCTGGATGCTGAAATCGCCGTCGAGGGAGACATTGTGAGACTC
JMFF028L16+ AACCTGGATGCTGAAATCGCCGTCGAGGGAGACATTGTGAGACTC
JMSF009I04- CTGAAATCGCAGTCGAGGGAGACATTGTGAGACTC
JMSF051J02+ GACTGAGGGTAATAGAACCTGGATGCTGAAATCGCCGTCGAGGGAGACATTGTGAGACTC
____________________________________________________________
consensus GACTGAGGGTAATAGAACCTGGATGCTGAAATCGCCGTCGAGGGAGACATTGTGAGACTC
. : . : . : . : . : . :
JMFS168D07+ CTCCACGATGAAATCGCCGGTTCCAGCGCCTTGAAGCATCATCTGACGCTCCCTGCGATC
JMFF028L16+ CTCCACGATGAAATCGCCGGTTCCAGCGCCTTGAAGCATCATCTGACGCTCCCTGCGATC
JMSF009I04- CTCCGGGATGAAATTGCCGGTTCCAGCGCCTT
JMSF051J02+ CTCCACGATGAAATCGCCGGTTCCAGCGCCTTGAAGCATCATCTGACGCTCCCTGCGATC
____________________________________________________________
consensus CTCCACGATGAAATCGCCGGTTCCAGCGCCTTGAAGCATCATCTGACGCTCCCTGCGATC
. : . : . : . : . : . :
JMFS168D07+ AAGATCGGAGGCGAGGGCCGCCAAATCGAACTCCGAGAAGAACGGACCCTGCAACACAGT
JMFF028L16+ AAGATCGGAGGCGAGGGCCGCCAAATCGAACTCCGAGAAGAACGGACCCTGCAACACAGT
JMSF051J02+ AAGATCGGAGGCGAGGGCCGCCAAATCGAACTCCGAGAAGAACGGACCCTGCAACACAGT
____________________________________________________________
consensus AAGATCGGAGGCGAGGGCCGCCAAATCGAACTCCGAGAAGAACGGACCCTGCAACACAGT
. : . : . : . : . : . :
JMFS168D07+ GTTCACGCAATGCACAGCGCAGAGCTTAGATTCCTGCACCTCGTGGTACAACATCCCACC
JMFF028L16+ GTTCACGCAATGCACAGCGCAGAGCTTAGATTCCTGCACCTCGTGGTACAACATCCCACC
JMSF051J02+ GTTCACGCAATGCACAGCGCAGAGCTTAGATTCNTGCACCTCGTGGTACAACATCCCACC
____________________________________________________________
consensus GTTCACGCAATGCACAGCGCAGAGCTTAGATTCCTGCACCTCGTGGTACAACATCCCACC
. : . : . : . : . : . :
JMFS168D07+ ATTGCTAGCTGTTGCCCCTTCCATTCCAATTTCTTCAATAAATTTAAACCCTAATTTCTG
JMFF028L16+ ATTGCTAGCTGTTGCCCCTTCCATTCCAATTTCTTCAATAAATTTAAACCCTAATTTCTG
JMSF051J02+ ATTGCTAGCTGTTGCCCCTTCCATTCCAATTTCTTCAATAAATTTAAACCCTAATTTCTG
____________________________________________________________
consensus ATTGCTAGCTGTTGCCCCTTCCATTCCAATTTCTTCAATAAATTTAAACCCTAATTTCTG
. : . : . : . : . : . :
JMFS168D07+ CGACTCTGTTTTATCTGTCTCCCTCTCTCTCTCTCTCTGTTCCTCTCTCTAAA
JMFF028L16+ CGACTCTGTTTTATCTGTCTCCCTCTCTCTCTCTCTCTGTTCCTCTCTCTAAACTTCTGT
JMSF051J02+ CGACTCTGTTTTATCTGTCTCCCTCTCTCTCTCTCTCTGTTCCTCTCTCTAAACTTCTGT
____________________________________________________________
consensus CGACTCTGTTTTATCTGTCTCCCTCTCTCTCTCTCTCTGTTCCTCTCTCTAAACTTCTGT
. : . : . : . : . : . :
JMFF028L16+ CTGTATCAGTCTCTCTCTTCTCGGTCCTAAC
JMSF051J02+ CTGTATCAGTCTCTCTCTTCTCTGTCCTAACGACGAATTGACGATGCCTCGATGAAACCA
____________________________________________________________
consensus CTGTATCAGTCTCTCTCTTCTCTGTCCTAACGACGAATTGACGATGCCTCGATGAAACCA