Contig 006728:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF039H02Sequence522006728 (7)gb|KJB79238.1|5e-47hypothetical protein B456_013G038900 [Gossypium raimondii]763011178 (8)dbj|BAF01745.1|169putative endomembrane protein EMP70 precusor isolog [Arabidopsis thaliana]
JMFF045E17Sequence628006728 (7)gb|KHG16990.1|8e-63Transmembrane 9 superfamily member 3 [Gossypium arboreum]582011178 (8)ref|XP_006385204.1|3e-27hypothetical protein POPTR_0003s011002g, partial [Populus trichocarpa] gb|ERP630
JMSF002O12Sequence245006728 (7)760011178 (8)ref|NP_001182857.1|3e-61uncharacterized protein LOC100501115 precursor [Zea mays] gb|ACR34922.1| unknown
JMSF017J01Sequence436006728 (7)ref|XP_010930775.1|97.8PREDICTED: transmembrane 9 superfamily member 1 [Elaeis guineensis] ref|XP_01093754011178 (8)dbj|BAF01745.1|191putative endomembrane protein EMP70 precusor isolog [Arabidopsis thaliana]
JMSF032K14Sequence666006728 (7)gb|KHG16990.1|2e-73Transmembrane 9 superfamily member 3 [Gossypium arboreum]616011178 (8)ref|XP_006385204.1|2e-45hypothetical protein POPTR_0003s011002g, partial [Populus trichocarpa] gb|ERP630
JMSF046E03Sequence664006728 (7)gb|KHG16990.1|1e-67Transmembrane 9 superfamily member 3 [Gossypium arboreum]642011178 (8)ref|XP_006385204.1|4e-45hypothetical protein POPTR_0003s011002g, partial [Populus trichocarpa] gb|ERP630
JMSF049A20Sequence702006728 (7)gb|KHG16990.1|3e-68Transmembrane 9 superfamily member 3 [Gossypium arboreum]775011178 (8)ref|XP_006385204.1|6e-45hypothetical protein POPTR_0003s011002g, partial [Populus trichocarpa] gb|ERP630

Alignment

This contig is upended


. : . : . : . : . : . :
JMFF045E17+ GAATGATCTGATCTTNATTATATTT
JMSF032K14+ TAAAGGTTTTGGGCTCTCTTGACTGAGATTGACATGAATGATCTGATCTTTATTATATTT
JMSF046E03+ ACTGAGATTGACATGAATGATCTGATCTTTATTATATTT
JMSF049A20+ ACTGAGATTGACATGAATGATCTGATCTTTATTATATTT
                      ____________________________________________________________
consensus TAAAGGTTTTGGGCTCTCTTGACTGAGATTGACATGAATGATCTGATCTTTATTATATTT
 
. : . : . : . : . : . :
JMFF045E17+ AACTGTTATACTNTTATGGGTGAAAATAACAGGTTTGTTATCACTATTCCTGTCCAGGTC
JMSF032K14+ AACTGTTATACTTTTATGGGTGAAAATAACAGGTTTGTTATCACTATTCCTGTCCAGGTC
JMSF046E03+ AACTGTTATACTTTTATGGGTGAAAATAACAGGTTTGTTATCACTATTCCTGTCCAGGTC
JMSF049A20+ AACTGTTATACTTTTATGGGTGAAAATAACAGGTTTGTTATCACTATTCCTGTCCAGGTC
                      ____________________________________________________________
consensus AACTGTTATACTTTTATGGGTGAAAATAACAGGTTTGTTATCACTATTCCTGTCCAGGTC
 
. : . : . : . : . : . :
JMFF045E17+ CCCAACAAAACCCCATAAAGGCAAATCATCCATGAAGAATTCAAACCAATAACTGTTTTC
JMFF039H02+ CAAATCATCCATGAAGAATTCAAACCAATAACTGTTTTC
JMSF032K14+ CCCAACAAAACCCCATAAAGGCAAATCATCCATGAAGAATTCAAACCAATAACTGTTTTC
JMSF046E03+ CCCAACAAAACCCCATAAAGGCAAATCATCCATGAAGAATTCAAACCAATAACTGTTTTC
JMSF049A20+ CCCAACAAAACCCCATAAAGGCAAATCATCCATGAAGAATTCAAACCAATAACTGTTTTC
                      ____________________________________________________________
consensus CCCAACAAAACCCCATAAAGGCAAATCATCCATGAAGAATTCAAACCAATAACTGTTTTC
 
. : . : . : . : . : . :
JMFF045E17+ AATAGCATCCTTGAATTTCCTGACCTTCGTCTCATCTAGTTCAAGTTGACAAATATGGCC
JMFF039H02+ AATAGCATCCTTGAATTTCCTGACCTTCGTCTCATCTAGTTCAAGTTGACAAATATGGCC
JMSF032K14+ AATAGCATCCTTGAATTTCCTGACCTTCGTCTCATCTAGTTCAAGTTGACAAATATGGCC
JMSF046E03+ AATAGCATCCTTGAATTTCCTGACCTTCGTCTCATCTAGTTCAAGTTGACAAATATGGCC
JMSF049A20+ AATAGCATCCTTGAATTTCCTGACCTTCGTCTCATCTAGTTCAAGTTGACAAATATGGCC
                      ____________________________________________________________
consensus AATAGCATCCTTGAATTTCCTGACCTTCGTCTCATCTAGTTCAAGTTGACAAATATGGCC
 
. : . : . : . : . : . :
JMFF045E17+ CTTGTCCACATTTTTTTGAAACTTTATGTTGATCTGGCTATCTATAAGTTCATTTCCACC
JMFF039H02+ CTTGTCCACATTTTTTTGAAACTTTATGTTGATCTGGCTATCTATAAGTTCATTTCCACC
JMSF032K14+ CTTGTCCACATTTTTTTGAAACTTTATGTTGATCTGGCTATCTATAAGTTCATTTCCACC
JMSF046E03+ CTTGTCCACATTTTTTTGAAACTTTATGTTGATCTGGCTATCTATAAGTTCATTTCCACC
JMSF017J01+ TTATGTTGATCTGGCTATCTATAAGTTCATTTCCACC
JMSF049A20+ CTTGTCCACATTTTTTTGAAACTTTATGTTGATCTGGCTATCTATAAGTTCATTTCCACC
                      ____________________________________________________________
consensus CTTGTCCACATTTTTTTGAAACTTTATGTTGATCTGGCTATCTATAAGTTCATTTCCACC
 
. : . : . : . : . : . :
JMFF045E17+ TAAAACTTCACCAAGGCCACCCCATCTGTGAGGAGCATTTTCAGATGCACGACAAAATGG
JMFF039H02+ TAAAACTTCACCAAGGCCACCCCATCTGTGAGGAGCATTTTCAGATGCACGACAAAATGG
JMSF032K14+ TAAAACTTCACCAAGGCCACCCCATCTGTGAGGAGCATTTTCAGATGCACGACAAAATGG
JMSF046E03+ TAAAACTTCACCAAGGCCACCCCATCTGTGAGGAGCATTTTCAGATGCACGACAAAATGG
JMSF017J01+ TAAAACTTCACCAAGGCCACCCCATCTGTGAGGAGCATTTTCAGATGCACGACAAAATGG
JMSF049A20+ TAAAACTTCACCAAGGCCACCCCATCTGTGAGGAGCATTTTCAGATGCACGACAAAATGG
                      ____________________________________________________________
consensus TAAAACTTCACCAAGGCCACCCCATCTGTGAGGAGCATTTTCAGATGCACGACAAAATGG
 
. : . : . : . : . : . :
JMFF045E17+ AAGGCTGTAATAGTTGTAGGTCTCTTGTGGGTTATAGTAAGGTCCAACTTTATTTACCCA
JMFF039H02+ AAGGCTGTAATAGTTGTAGGTCTCTTGTGGGTTATAGTAAGGTCCAACTTTATTTACCCA
JMSF032K14+ AAGGCTGTAATAGTTGTAGGTCTCTTGTGGGTTATAGTAAGGTCCAACTTTATTTACCCA
JMSF046E03+ AAGGCTGTAATAGTTGTAGGTCTCTTGTGGGTTATAGTAAGGTCCAACTTTATTTACCCA
JMSF017J01+ AAGGCTGTAATAGTTGTAGGTCTCTTGTGGGTTATAGTAAGGTCCAACTTTATTTACCCA
JMSF049A20+ AAGGCTGTAATAGTTGTAGGTCTCTTGTGGGTTATAGTAAGGTCCAACTTTATTTACCCA
                      ____________________________________________________________
consensus AAGGCTGTAATAGTTGTAGGTCTCTTGTGGGTTATAGTAAGGTCCAACTTTATTTACCCA
 
. : . : . : . : . : . :
JMFF045E17+ AAGGGTAACAGGGTCATCAGGCTTATACTTGTGATCGGACTCGGAAGCCAACACTGGCGA
JMFF039H02+ AAGGGTAACAGGGTCATCAGGCTTATACTTGTGATCGGACTCGGAAGCCAACACTGGCGA
JMSF032K14+ AAGGGTAACAGGGTCATCAGGCTTATACTTGTGATCGGACTCGGAAGCCAACACTGGCGA
JMSF046E03+ AAGGGTAACAGGGTCATCAGGCTTATACTTGTGATCGGACTCGGAAGCCAACACTGGCGA
JMSF017J01+ AAGGGTAACAGGGTCATCAGGCTTATACTTGTGATCGGACTCGGAAGCCAACACTGGCGA
JMSF002O12+ TGATCGGACTCGGAAGCCAACACTGGCGA
JMSF049A20+ AAGGGTAACAGGGTCATCAGGCTTATACTTGTGATCGGACTCGGAAGCCAACACTGGCGA
                      ____________________________________________________________
consensus AAGGGTAACAGGGTCATCAGGCTTATACTTGTGATCGGACTCGGAAGCCAACACTGGCGA
 
. : . : . : . : . : . :
JMFF045E17+ GACGACGAGGACGGCGGCGAGGAAAGAGAGTATTCCGACGGCGTGCAACATCACTGTCGC
JMFF039H02+ GACGACGAGGACGGCGGCGAGGAAAGAGAGTATTCCGACGGCGTGCAACATCACTGTCGC
JMSF032K14+ GACGACGAGGACGGCGGCGAGGAAAGAGAGTATTCCGACGGCGTGCAACATCACTGTCGC
JMSF046E03+ GACGACGAGGACGGCGGCGAGGAAAGAGAGTATTCCGACGGCGTGCAACATCACTGTCGC
JMSF017J01+ GACGACGAGGACGGCGGCGAGGAAAGAGAGTATTCCGACGGCGTGCAACATCACTGTCGC
JMSF002O12+ GACGACGAGGACGGCGGCGAGGAAAGAGAGTATTCCGACGGCGTGCAACATCACTGTCGC
JMSF049A20+ GACGACGAGGACGGCGGCGAGGAAAGAGAGTATTCCGACGGCGTGCAACATCACTGTCGC
                      ____________________________________________________________
consensus GACGACGAGGACGGCGGCGAGGAAAGAGAGTATTCCGACGGCGTGCAACATCACTGTCGC
 
. : . : . : . : . : . :
JMFF045E17+ CGTACTTCCGATGGCCTGGATCTAAGTTCGCAAGAGATGTAGATCGCGAAGAGCAGATGA
JMFF039H02+ CGTACTTCCGATGGCCTGGATCTAAGTTCGCAAGAGATGTAGATCGCGAAGAGCAGATGA
JMSF032K14+ CGTACTTCCGATGGCCTGGATCTAAGTTCGCAAGAGATGTAGATCGCGAAGAGCAGATGA
JMSF046E03+ CGTACTTCCGATGGCCTGGATCTAAGTTCGCAAGAGATGTAGATCGCGAAGAGCAGATGA
JMSF017J01+ CGTACTTCCGATGGCCTGGATCTAAGTTCGCAAGAGATGTAGATCGCGAAGAGCAGATGA
JMSF002O12+ CGTACTTCCGATGGCCTGGATCTAAGTTCGCAAGAGATGTAGATCGCGAAGAGCAGATGA
JMSF049A20+ CGTACTTCCGATGGCCTGGATCTAAGTTCGCAAGAGATGTAGATCGCGAAGAGCAGATGA
                      ____________________________________________________________
consensus CGTACTTCCGATGGCCTGGATCTAAGTTCGCAAGAGATGTAGATCGCGAAGAGCAGATGA
 
. : . : . : . : . : . :
JMFF045E17+ GGTATATATGAGGATGAAGACCCGATTTGCCTTTGCTCGGTGGATCACGACACGATAAAG
JMFF039H02+ GGTATATATGAGGATGAAGACCCGATTTGCCTTTGCTCGGTGGATCACGACACGATAAAG
JMSF032K14+ GGTATATATGAGGATGAAGACCCGATTTGCCTTTGCTCGGTGGATCACGACACGATAAAG
JMSF046E03+ GGTATATATGAGGATGAAGACCCGATTTGCCTTTGCTCGGTGGATCACGACACGATAAAG
JMSF017J01+ GGTATATATGAGGATGAAGACCCGATTTGCCTTTGCTCGGTGGATCACGACACGATAAAG
JMSF002O12+ GGTATATATGAGGATGAAGACCCGATTTGCCTTTGCTCGGTGGATCACGACACGATAAAG
JMSF049A20+ GGTATATATGAGGATGAAGACCCGATTTGCCTTTGCTCGGTGGATCACGACACGATAAAG
                      ____________________________________________________________
consensus GGTATATATGAGGATGAAGACCCGATTTGCCTTTGCTCGGTGGATCACGACACGATAAAG
 
. : . : . : . : . : . :
JMFF045E17+ ACT
JMFF039H02+ ACT
JMSF032K14+ ACTAC
JMSF046E03+ ACTACAGAGATCCGTACTTCCGGC
JMSF017J01+ ACTACAGAGATCCGTACTTCCGGCAAAACGAAG
JMSF002O12+ ACTACAGAGATCCGTACTTCCGGCAAAACGAAG
JMSF049A20+ ACTACAGAGATCCGTACTTCCGGCAAAACGAAGTTCATAAATGCTCTGTGCTTTTTTCCA
                      ____________________________________________________________
consensus ACTACAGAGATCCGTACTTCCGGCAAAACGAAGTTCATAAATGCTCTGTGCTTTTTTCCA