Contig 006700:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN010A24Sequence624006700 (2)gb|AFK45758.1|6e-99unknown [Lotus japonicus]
JMSF045D06Sequence810006700 (2)ref|XP_009757747.1|5e-125PREDICTED: protein trichome birefringence-like 3 [Nicotiana sylvestris]110024671

Alignment

This contig is upended


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JMFN010A24+                                                TCCGCACTCCTGTACCAAAAGTT
                      ____________________________________________________________
consensus                                                  TCCGCACTCCTGTACCAAAAGTT
 
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JMFN010A24+           CGAAATAATATGTCAGGAGTTAGACTAACTAATTGATTGAATTCAATTCAAACTTTTAGT
                      ____________________________________________________________
consensus             CGAAATAATATGTCAGGAGTTAGACTAACTAATTGATTGAATTCAATTCAAACTTTTAGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN010A24+           GCTTACCTGGTGTGTGTAGGCGACATTGTGGTAAAAAACACCCGCGTTTTGTTGGGATCG
                      ____________________________________________________________
consensus             GCTTACCTGGTGTGTGTAGGCGACATTGTGGTAAAAAACACCCGCGTTTTGTTGGGATCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN010A24+           ATGTTTGAGTCTATCCAGTTTGCCCATGTACGCAGTGCCAGTTTGTATGACACAGGGGTG
                      ____________________________________________________________
consensus             ATGTTTGAGTCTATCCAGTTTGCCCATGTACGCAGTGCCAGTTTGTATGACACAGGGGTG
 
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JMFN010A24+           TCAAATGTCTCATAGCCATCTTCACCATTTTCAAATGAACCCCACAAAGCGTTGGACTTT
                      ____________________________________________________________
consensus             TCAAATGTCTCATAGCCATCTTCACCATTTTCAAATGAACCCCACAAAGCGTTGGACTTT
 
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JMFN010A24+           AGGCCACTCATCCACCAAACATAAGTATTGAAGACCAAGATATCTACTCCTAACCAGTGC
JMSF045D06+                                                             TAACCAGTGC
                      ____________________________________________________________
consensus             AGGCCACTCATCCACCAAACATAAGTATTGAAGACCAAGATATCTACTCCTAACCAGTGC
 
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JMFN010A24+           TTGCCACGCCTGGAAATGGAGTCCACCTTTATGATTCTCTTCTTGGCATCCGCTATTATC
JMSF045D06+           TTGCCACGCCTGGAAATGGAGTCCACCTTTATGATTCTCTTCTTGGCATCCGCTATTATC
                      ____________________________________________________________
consensus             TTGCCACGCCTGGAAATGGAGTCCACCTTTATGATTCTCTTCTTGGCATCCGCTATTATC
 
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JMFN010A24+           TGGATATCGGTGTTAGACTCCACCAAGAACGGCGCCCAATAGAATTCAATCGTGGCATTG
JMSF045D06+           TGGATATCGGTGTTAGACTCCACCAAGAACGGCGCCCAATAGAATTCAATCGTGGCATTG
                      ____________________________________________________________
consensus             TGGATATCGGTGTTAGACTCCACCAAGAACGGCGCCCAATAGAATTCAATCGTGGCATTG
 
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JMFN010A24+           TACTCCTTAACTTGGAACACAGAATGACCACGACCGCGCTTCATGGACTTCTGGTCTTCC
JMSF045D06+           TACTCCTTAACTTGGAACACAGAATGACCACGACCGCGCTTCATGGACTTCTGGTCTTCC
                      ____________________________________________________________
consensus             TACTCCTTAACTTGGAACACAGAATGACCACGACCGCGCTTCATGGACTTCTGGTCTTCC
 
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JMFN010A24+           GGTATTACAGAATTAACCATGCAAACAAAAGACTCCCACTGGTTTCTCTGCAGTGAATCC
JMSF045D06+           GGTATTACAGAATTAACCATGCAAACAAAAGACTCCCACTGGTTTCTCTGCAGTGAATCC
                      ____________________________________________________________
consensus             GGTATTACAGAATTAACCATGCAAACAAAAGACTCCCACTGGTTTCTCTGCAGTGAATCC
 
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JMFN010A24+           CCGACGAACATCATCCTCTTCCCTCGGATCTTCCTCAGAGCATTCTCGGGATCAAAGCT 
JMSF045D06+           CCGACGAACATCATCCTCTTCCCTCGGATCTTCCTCAGAGCATTCTCGGGATCAAAGCTT
                      ____________________________________________________________
consensus             CCGACGAACATCATCCTCTTCCCTCGGATCTTCCTCAGAGCATTCTCGGGATCAAAGCTT
 
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JMSF045D06+           GGCAAGATGCAGTCATCCGGCAGCCATACCCAATGACGATAATCTGAATCTTCTCTGCCA
                      ____________________________________________________________
consensus             GGCAAGATGCAGTCATCCGGCAGCCATACCCAATGACGATAATCTGAATCTTCTCTGCCA
 
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JMSF045D06+           TTCTTAACGCACGAAAACTGTCTGTCAACGTACGGACAACTAGTGTCCGTGTATAAAGGC
                      ____________________________________________________________
consensus             TTCTTAACGCACGAAAACTGTCTGTCAACGTACGGACAACTAGTGTCCGTGTATAAAGGC
 
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JMSF045D06+           TTAATCGAAGTATTAAACACCCATTTCCCGCCAGTAAGACTGCACTCCTCAGCGTCAAAC
                      ____________________________________________________________
consensus             TTAATCGAAGTATTAAACACCCATTTCCCGCCAGTAAGACTGCACTCCTCAGCGTCAAAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF045D06+           TCGAACCTATCATCCGTTGCCTCACTAATCGGACGGCTCTTCAATTCTTTATCATCTGGT
                      ____________________________________________________________
consensus             TCGAACCTATCATCCGTTGCCTCACTAATCGGACGGCTCTTCAATTCTTTATCATCTGGT
 
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JMSF045D06+           ATTAACTTCTTAGGCTTTGCAGCATGGCGCTTGGGGCAGGATTTGAATTTGAAAATGTTG
                      ____________________________________________________________
consensus             ATTAACTTCTTAGGCTTTGCAGCATGGCGCTTGGGGCAGGATTTGAATTTGAAAATGTTG
 
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JMSF045D06+           CTGGAAGAGAGGAGGCTGATTCTTTCAGTGTACAATAGAGCAATGAAGGCCAAGGTGCAG
                      ____________________________________________________________
consensus             CTGGAAGAGAGGAGGCTGATTCTTTCAGTGTACAATAGAGCAATGAAGGCCAAGGTGCAG
 
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JMSF045D06+           ATGATGGCTGTAATGGCTGGCAAAGATAGCTTTATTCTGGGAGGTTTTGGAGTGCCAGTC
                      ____________________________________________________________
consensus             ATGATGGCTGTAATGGCTGGCAAAGATAGCTTTATTCTGGGAGGTTTTGGAGTGCCAGTC
 
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JMSF045D06+           ATGCTGGAAGGTGGGTAGGGGCAACGGAGGAGGAGGAGGAACGGGGGAAGCTTGAGTATC
                      ____________________________________________________________
consensus             ATGCTGGAAGGTGGGTAGGGGCAACGGAGGAGGAGGAGGAACGGGGGAAGCTTGAGTATC