| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF044J05 | Sequence | 829 | 006694 (3) | ref|XP_011075875.1| | 5e-111 | PREDICTED: uncharacterized calcium-binding protein At1g02270 [Sesamum indicum] | 784 | 012776 (3) | emb|CDP04975.1| | 1e-108 | unnamed protein product [Coffea canephora] |
| JMSF045F13 | Sequence | 791 | 006694 (3) | ref|XP_011075875.1| | 1e-102 | PREDICTED: uncharacterized calcium-binding protein At1g02270 [Sesamum indicum] | 810 | 012776 (3) | ref|XP_007136365.1| | 8e-12 | hypothetical protein PHAVU_009G039100g, partial [Phaseolus vulgaris] gb|ESW08359 |
| JMSF050D06 | Sequence | 710 | 006694 (3) | ref|XP_011075875.1| | 3e-105 | PREDICTED: uncharacterized calcium-binding protein At1g02270 [Sesamum indicum] | 769 | 012776 (3) | |||
This contig is upended
. : . : . : . : . : . :
JMSF045F13+ CTGTCGCAGAC
JMSF050D06+ TTTGTAGACCTGTCGCAGAC
JMSF044J05+ TTTTGATATGATTCCACATATTGCAATATTTTGTAGACCTGTCGCAGAC
____________________________________________________________
consensus TTTTGATATGATTCCACATATTGCAATATTTTGTAGACCTGTCGCAGAC
. : . : . : . : . : . :
JMSF045F13+ GTTCCAAGCAAATACTTGAATCGTGCGGGAACAGCAAGTGTGTGTTGACTATAAGAATTT
JMSF050D06+ GTTCCAAGCAAATACTTGAATCGTGCGGGAACAGCAAGTGTGTGTTGACTATAAGAATTT
JMSF044J05+ GTTCCAAGCAAATACTTGAATCGTGCGGGAACAGCAAGTGTGTGTTGACTATAAGAATTT
____________________________________________________________
consensus GTTCCAAGCAAATACTTGAATCGTGCGGGAACAGCAAGTGTGTGTTGACTATAAGAATTT
. : . : . : . : . : . :
JMSF045F13+ CTTTTCTAACATTAACATTTCGACACGGCGAGCAGGGTAATACTAGCTCAACGTGTAATA
JMSF050D06+ CTTTTCTAACATTAACATTTCGACACGGCGAGCAGGGTAATACTAGCTCAACGTGTAATA
JMSF044J05+ CTTTTCTAACATTAACATTTCGACACGGCGAGCAGGGTAATACTAGCTCAACGTGTAATA
____________________________________________________________
consensus CTTTTCTAACATTAACATTTCGACACGGCGAGCAGGGTAATACTAGCTCAACGTGTAATA
. : . : . : . : . : . :
JMSF045F13+ ACTGTGCAACACGGTCTCCAAAATCATTGAAAAGCAACTCTTGGTGGCTTATAACACTGA
JMSF050D06+ ACTGTGCAACACGGTCTCCAAAATCATTGAAAAGCAACTCTTGGTGGCTTATAACACTGA
JMSF044J05+ ACTGTGCAACACGGTCTCCAAAATCATTGAAAAGCAACTCTTGGTGGCTTATAACACTGA
____________________________________________________________
consensus ACTGTGCAACACGGTCTCCAAAATCATTGAAAAGCAACTCTTGGTGGCTTATAACACTGA
. : . : . : . : . : . :
JMSF045F13+ AGTAATCCTTATGTACAGCAGTCAACAGACCATCACCCCGGTTGTTAGTTCTGGCAAGCT
JMSF050D06+ AGTAATCCTTATGTACAGCAGTCAACAGACCATCACCCCGGTTGTTAGTTCTGGCAAGCT
JMSF044J05+ AGTAATCCTTATGTACAGCAGTCAACAGACCATCACCCCGGTTGTTAGTTCTGGCAAGCT
____________________________________________________________
consensus AGTAATCCTTATGTACAGCAGTCAACAGACCATCACCCCGGTTGTTAGTTCTGGCAAGCT
. : . : . : . : . : . :
JMSF045F13+ TAAAAGTAAGATATCCAGCATCACCTAGTTTCTTGTCATAGAGATCAACAAGCTCTTCAT
JMSF050D06+ TAAAAGTAAGATATCCAGCATCACCTAGTTTCTTGTCATAGAGATCAACAAGCTCTTCAT
JMSF044J05+ TAAAAGTAAGATATCCAGCATCACCTAGTTTCTTGTCATAGAGATCAACAAGCTCTTCAT
____________________________________________________________
consensus TAAAAGTAAGATATCCAGCATCACCTAGTTTCTTGTCATAGAGATCAACAAGCTCTTCAT
. : . : . : . : . : . :
JMSF045F13+ TTCCAACCCAAAATTCCTGAAGACAAATGATGGAAGATCTTTCATACAATAACCATTCCA
JMSF050D06+ TTCCAACCCAAAATTCCTGAAGACAAATGATGGAAGATCTTTCATACAATAACCATTCCA
JMSF044J05+ TTCCAACCCAAAATTCCTGAAGACAAATGATGGAAGATCTTTCATACAATAACCATTCCA
____________________________________________________________
consensus TTCCAACCCAAAATTCCTGAAGACAAATGATGGAAGATCTTTCATACAATAACCATTCCA
. : . : . : . : . : . :
JMSF045F13+ AGATTCTTTCGTTCCTGTCCAACCAAAATCCCCTGAAATGGCTTTCTCTAACACTGGGGT
JMSF050D06+ AGATTCTTTCGTTCCTGTCCAACCAAAATCCCCTGAAATGGCTTTCTCTAACACTGGGGT
JMSF044J05+ AGATTCTTTCGTTCCTGTCCAACCAAAATCCCCTGAAATGGCTTTCTCTAACACTGGGGT
____________________________________________________________
consensus AGATTCTTTCGTTCCTGTCCAACCAAAATCCCCTGAAATGGCTTTCTCTAACACTGGGGT
. : . : . : . : . : . :
JMSF045F13+ CCTCGTTACAGAGCCTTTTGTAAATGGGAGCAAGGATATTGAAAGTTGTGCAAGAAACGG
JMSF050D06+ CCTCGTTACAGAGCCTTTTGTAAATGGGAGCAAGGATATTGAAAGTTGTGCAAGAAACGG
JMSF044J05+ CCTCGTTACAGAGCCTTTTGTAAATGGGAGCAAGGATATTGAAAGTTGTGCAAGAAACGG
____________________________________________________________
consensus CCTCGTTACAGAGCCTTTTGTAAATGGGAGCAAGGATATTGAAAGTTGTGCAAGAAACGG
. : . : . : . : . : . :
JMSF045F13+ AATTGGGATCGGAGATTGAAGAGGCAGCTGCATAGCCGCCGATTCTGGAAGCCCTCCCTT
JMSF050D06+ AATTGGGATCGGAGATTGAAGAGGCAGCTGCATAGCCGCCGATTCTGGAAGCCCTCCCTT
JMSF044J05+ AATTGGGATCGGAGATTGAAGAGGCAGCTGCATAGCCGCCGATTCTGGAAGCCCTCCCTT
____________________________________________________________
consensus AATTGGGATCGGAGATTGAAGAGGCAGCTGCATAGCCGCCGATTCTGGAAGCCCTCCCTT
. : . : . : . : . : . :
JMSF045F13+ TGGCTAGTCCCCTCTTCTTCCTCCCCATTGTGAATTATGTATTTAGGATGAATACCCGGA
JMSF050D06+ TGGCTAGTCCCCTCTTCTTCCTCCCCATTGTGAATTATGTATTTAGGATGAATACCCGGA
JMSF044J05+ TGGCTAGTCCCCTCTTCTTCCTCCCCATTGTGAATTATGTATTTAGGATGAATACCCGGA
____________________________________________________________
consensus TGGCTAGTCCCCTCTTCTTCCTCCCCATTGTGAATTATGTATTTAGGATGAATACCCGGA
. : . : . : . : . : . :
JMSF045F13+ GTTGAAAAGTGTGTATGCCGGAGGGGCAAAAGACAAGGGAGAGGAAGAAAAAACAGAGAG
JMSF050D06+ GTTGAAAAGTGTGTATGCCGGAGGGGCAAAAGACAAGGGAGAGGAAGAAAAAACAGAGAG
JMSF044J05+ GTTGAAAAGTGTGTATGCCGGAGGGGCAAAAGACAAGGGAGAGGAAGAAAAAACAGAGAG
____________________________________________________________
consensus GTTGAAAAGTGTGTATGCCGGAGGGGCAAAAGACAAGGGAGAGGAAGAAAAAACAGAGAG
. : . : . : . : . : . :
JMSF045F13+ AGAGAAAGAGAGTAGAATCTAGTCTATAAGAAAAGAAAGAATTGATAGATGAAGATCGAG
JMSF050D06+ AGAGAAAGAGAGTAGAATCT
JMSF044J05+ AGAGAAAGAGAGTAGAATCTAGTCTATAAGAAAAGAAAGAATTGATAGATGAAGATCGAG
____________________________________________________________
consensus AGAGAAAGAGAGTAGAATCTAGTCTATAAGAAAAGAAAGAATTGATAGATGAAGATCGAG
. : . : . : . : . : . :
JMSF045F13+ GAGATTGAGAGAATGAAGAAGACAAAGAATGCAGCGGAATTGCGTTTCATGAGTCATCTC
JMSF044J05+ GAGATTGAGAGAATGAAGAAGACAAAGAATGCAGCGGAATTGCGTTTCATGAGTCATCTC
____________________________________________________________
consensus GAGATTGAGAGAATGAAGAAGACAAAGAATGCAGCGGAATTGCGTTTCATGAGTCATCTC