clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF004L14 | Sequence | 476 | 006691 (11) | ref|XP_009771287.1| | 3e-15 | PREDICTED: GDT1-like protein 2, chloroplastic isoform X2 [Nicotiana sylvestris] | 717 | 005516 (10) | ref|XP_004247813.1| | 4e-78 | PREDICTED: GDT1-like protein 2, chloroplastic [Solanum lycopersicum] |
JMFF005O21 | Sequence | 491 | 006691 (11) | ref|XP_009618080.1| | 4e-29 | PREDICTED: GDT1-like protein 2, chloroplastic [Nicotiana tomentosiformis] | 672 | 005516 (10) | ref|XP_002518164.1| | 3e-55 | Transmembrane protein TPARL, putative [Ricinus communis] gb|EEF44297.1| Transmem |
JMFF020F01 | Sequence | 507 | 006691 (11) | ref|XP_009618080.1| | 1e-29 | PREDICTED: GDT1-like protein 2, chloroplastic [Nicotiana tomentosiformis] | 662 | 005516 (10) | ref|XP_010023776.1| | 7e-41 | PREDICTED: GDT1-like protein 2, chloroplastic isoform X1 [Eucalyptus grandis] g |
JMFF022A17 | Sequence | 571 | 006691 (11) | ref|XP_009618080.1| | 2e-47 | PREDICTED: GDT1-like protein 2, chloroplastic [Nicotiana tomentosiformis] | 729 | 005516 (10) | ref|XP_010023776.1| | 1e-45 | PREDICTED: GDT1-like protein 2, chloroplastic isoform X1 [Eucalyptus grandis] g |
JMFF036H05 | Sequence | 506 | 006691 (11) | ref|XP_009618080.1| | 3e-30 | PREDICTED: GDT1-like protein 2, chloroplastic [Nicotiana tomentosiformis] | 732 | 005516 (10) | ref|XP_004247813.1| | 1e-78 | PREDICTED: GDT1-like protein 2, chloroplastic [Solanum lycopersicum] |
JMFF044G23 | Sequence | 642 | 006691 (11) | ref|XP_009618080.1| | 7e-61 | PREDICTED: GDT1-like protein 2, chloroplastic [Nicotiana tomentosiformis] | 576 | 005516 (10) | ref|XP_002304693.2| | 1e-08 | hypothetical protein POPTR_0003s17320g [Populus trichocarpa] gb|EEE79672.2| hypo |
JMSF010B17 | Sequence | 257 | 006691 (11) | 736 | 005516 (10) | ref|XP_004247813.1| | 8e-90 | PREDICTED: GDT1-like protein 2, chloroplastic [Solanum lycopersicum] | |||
JMSF011L12 | Sequence | 352 | 006691 (11) | ref|XP_009618080.1| | 5e-05 | PREDICTED: GDT1-like protein 2, chloroplastic [Nicotiana tomentosiformis] | 702 | 005516 (10) | ref|XP_004247813.1| | 5e-88 | PREDICTED: GDT1-like protein 2, chloroplastic [Solanum lycopersicum] |
JMSF024P03 | Sequence | 658 | 006691 (11) | ref|XP_009618080.1| | 5e-72 | PREDICTED: GDT1-like protein 2, chloroplastic [Nicotiana tomentosiformis] | |||||
JMSF044G22 | Sequence | 768 | 006691 (11) | ref|XP_009618080.1| | 2e-71 | PREDICTED: GDT1-like protein 2, chloroplastic [Nicotiana tomentosiformis] | 747 | 005516 (10) | ref|XP_004247813.1| | 9e-88 | PREDICTED: GDT1-like protein 2, chloroplastic [Solanum lycopersicum] |
JMSF045L23 | Sequence | 759 | 006691 (11) | ref|XP_009618080.1| | 1e-60 | PREDICTED: GDT1-like protein 2, chloroplastic [Nicotiana tomentosiformis] | 683 | 005516 (10) | ref|XP_004247813.1| | 3e-78 | PREDICTED: GDT1-like protein 2, chloroplastic [Solanum lycopersicum] |
This contig is upended
. : . : . : . : . : . :
JMSF045L23+ AGATACATATTTAACGTCAAAAGTTCCACATGACCCAAGTCAGAGAA
____________________________________________________________
consensus AGATACATATTTAACGTCAAAAGTTCCACATGACCCAAGTCAGAGAA
. : . : . : . : . : . :
JMSF024P03+ CCTATTACGACAGAGAAGATGGTCATAAGTGAAAGAGCACCCATTGATCC
JMSF045L23+ TTTTTCACAAACTAAAACTGCATATCAGAAAGAGGGTAGAGCAAG-------ATGTTGAG
JMSF044G22+ CTATTACGACAGAGAAGATGGTCATAAGTGAAAGAGCACCCATTGATCC
____________________________________________________________
consensus TTTTTCACAACCTATTACGACAGAGAAGATGGTCATAAGTGAAAGAGCACCCATTGATCC
. : . : . : . : . : . :
JMFF044G23+ ACCAATAGTCTCTTGTATTGCATTGCCAATAGTGCAGCAATGAAAAATGTCTN
JMSF024P03+ CAGAAGAACCAATAGTCTCTTGTATTGCATTGCCAATAGTGCAGCAATGAAAAATGTCTT
JMSF045L23+ AACTCATACCAATAGTCTCTTGTATTGCATTGCCAATAGTGCAGCAATGAAAAATGTCTT
JMSF044G22+ CAGAAGAACCAATAGTCTCTTGTATTGCATTGCCAATAGTGCAGCAATGAAAAATGTCTT
____________________________________________________________
consensus CAGAAGAACCAATAGTCTCTTGTATTGCATTGCCAATAGTGCAGCAATGAAAAATGTCTT
. : . : . : . : . : . :
JMFF044G23+ GTCGCCAATTTCAGATACAAATATCAGTGAGAATGCTGCAGTAAAGCCTGACTTCGAAAA
JMSF024P03+ GTCGCCAATTTCAGATACAAATATCAGTGAGAATGCTGCAGTAAAGCCTGACTTCGAAAA
JMSF045L23+ GTCGCCAATTTCAGATACAAATATCAGTGAGAATGCTGCAGTAAAGCCTGACTTCGAAAA
JMFF022A17+ TCGCCAATTTCAGATACAAATATCAGTGAGAATGCTGCAGTAAAGCCTGACTTCGAAAA
JMSF044G22+ GTCGCCAATTTCAGATACAAATATCAGTGAGAATGCTGCAGTAAAGCCTGACTTCGAAAA
____________________________________________________________
consensus GTCGCCAATTTCAGATACAAATATCAGTGAGAATGCTGCAGTAAAGCCTGACTTCGAAAA
. : . : . : . : . : . :
JMFF005O21+ TTTTACAAAGGCAATCAGTGAAAATACCAAAGC
JMFF004L14+ AGTGAAAATCCCAAAGC
JMFF044G23+ TGCAGTTAAGATTGACGAAGGTCCTCCTTTTACAAAGGCAATCAGTGAAAATACCAAAGC
JMSF024P03+ TGCAGTTAAGATTGACGAAGGTCCTCCTTTTACAAAGGCAATCAGTGAAAATACCAAAGC
JMSF045L23+ TGCAGTTAAGATTGACGAAGGTCCTCCTTTTACAAAGGCAATCAGTGAAAATACCAAAGC
JMFF022A17+ TGCAGTTAAGATTGACGAAGGTCCTCCTTTTACAAAGGCAATCAGTGAAAATACCAAAGC
JMFF020F01+ TTTACAAAGGCAATCAGTGAAAATACCAAAGC
JMFF036H05+ TTTTACAAAGGCAATCAGTGAAAATACCAAAGC
JMSF044G22+ TGCAGTTAAGATTGACGAAGGTCCTCCTTTTACAAAGGCAATCAGTGAAAATACCAAAGC
____________________________________________________________
consensus TGCAGTTAAGATTGACGAAGGTCCTCCTTTTACAAAGGCAATCAGTGAAAATACCAAAGC
. : . : . : . : . : . :
JMFF005O21+ GCATCCACATAGCACTAGAGCTATAGAGAGAGGATAAGGAATTTGATTTGGAAGCTTCTC
JMFF004L14+ GCATCCACATAGCACTAGAGCTATAGAGAGAGGATAAGGAATTTGATTTGGAAGCTTCTC
JMFF044G23+ GCATCCACATAGCACTAGAGCTATAGAGAGAGGATAAGGAATTTGATTTGGAAGCTTCTC
JMSF024P03+ GCATCCACATAGCACTAGAGCTATAGAGAGAGGATAAGGAATTTGATTTGGAAGCTTCTC
JMSF045L23+ GCATCCACATAGCACTAGAGCTATAGAGAGAGGATAAGGAATTTGATTTGGAAGCTTCTC
JMFF022A17+ GCATCCACATAGCACTAGAGCTATAGAGAGAGGATAAGGAATTTGATTTGGAAGCTTCTC
JMFF020F01+ GCATCCACATAGCACTAGAGCTATAGAGAGAGGATAAGGAATTTGATTTGGAAGCTTCTC
JMFF036H05+ GCATCCACATAGCACTAGAGCTATAGAGAGAGGATAAGGAATTTGATTTGGAAGCTTCTC
JMSF044G22+ GCATCCACATAGCACTAGAGCTATAGAGAGAGGATAAGGAATTTGATTTGGAAGCTTCTC
____________________________________________________________
consensus GCATCCACATAGCACTAGAGCTATAGAGAGAGGATAAGGAATTTGATTTGGAAGCTTCTC
. : . : . : . : . : . :
JMFF005O21+ ATCTTTA-GCTGAAGTATCTATAGGTGGCTCACTGAATTCTTCATAACCCCCTGATCCAA
JMFF004L14+ ATCTTTAGGCTGAAGTATCTATAGGTGGCTCACTGAATTCTTCATAACCCCCTGATCCAA
JMFF044G23+ ATCTTTA-GCTGAAGTATCTATAGGTGGCTCACTGAATTCTTCATAACCCCCTGATCCAA
JMSF024P03+ ATCTTTA-GCTGAAGTATCTATAGGTGGCTCACTGAATTCTTCATAACCCCCTGATCCAA
JMSF045L23+ ATCTTTA-GCTGAAGTATCTATAGGTGGCTCACTGAATTCTTCATAACCCCCTGATCCAA
JMFF022A17+ ATCTTTA-GCTGAAGTATCTATAGGTGGCTCACTGAATTCTTCATAACCCCCTGATCCAA
JMFF020F01+ ATCTTTA-GCTGAAGTATCTATAGGTGGCTCACTGAATTCTTCATAACCCCCTGATCCAA
JMFF036H05+ ATCTTTA-GCTGAAGTATCTATAGGTGGCTCACTGAATTCTTCATAACCCCCTGATCCAA
JMSF044G22+ ATCTTTA-GCTGAAGTATCTATAGGTGGCTCACTGAATTCTTCATAACCCCCTGATCCAA
____________________________________________________________
consensus ATCTTTA-GCTGAAGTATCTATAGGTGGCTCACTGAATTCTTCATAACCCCCTGATCCAA
. : . : . : . : . : . :
JMFF005O21+ TGCCAACATTAGATGCATGTGACGTTGTTCTGCAGTGCCTCCAGCGCAGCTTAGGCAGCT
JMFF004L14+ TGCCAACATTAGATGCATGTGACGTTGTTCTGCAGTGCCTCCAGTGCAGCTTAGGCAGCT
JMFF044G23+ TGCCAACATTAGATGCATGTGACGTTGTTCTGCAGTGCCTCCAGTGCAGCTTAGGCAGCT
JMSF024P03+ TGCCAACATTAGATGCATGTGACGTTGTTCTGCAGTGCCTCCAGTGCAGCTTAGGCAGCT
JMSF045L23+ TGCCAACATTAGATGCATGTGACGTTGTTCTGCAGTGCCTCCAGTGCAGCTTAGGCAGCT
JMFF022A17+ TGCCAACATTAGATGCATGTGACGTTGTTCTGCAGTGCCTCCAGTGCAGCTTAGGCAGCT
JMFF020F01+ TGCCAACATTAGATGCATGTGACGTTGTTCTGCAGTGCCTCCAGTGCAGCTTAGGCAGCT
JMFF036H05+ TGCCAACATTAGATGCATGTGACGTTGTTCTGCAGTGCCTCCAGTGCAGCTTAGGCAGCT
JMSF011L12+ TTAGATGCATGTGACGTTGTTCTGCAGTGCCTCCAGTGCAGCTTAGGCAGCT
JMSF044G22+ TGCCAACATTAGATGCATGTGACGTTGTTCTGCAGTGCCTCCAGTGCAGCTTAGGCAGCT
____________________________________________________________
consensus TGCCAACATTAGATGCATGTGACGTTGTTCTGCAGTGCCTCCAGTGCAGCTTAGGCAGCT
. : . : . : . : . : . :
JMFF005O21+ CCCACCTTCTTAAGAAAGAGGGTTGTACAAGTGTAGTTCTTGCGGGTACGAAAGGGCACG
JMFF004L14+ CCCACCTTCTTAAGAAAGAGGGTTGTACAAGTGTAGTTCTTGCGGGTACGAAAGGGCACG
JMFF044G23+ CCCACCTTCTTAAGAAAGAGGGTTGTACAAGTGTAGTTCTTGCGGGTACGAAAGGGCACG
JMSF024P03+ CCCACCTTCTTAAGAAAGAGGGTTGTACAAGTGTAGTTCTTGCGGGTACGAAAGGGCACG
JMSF045L23+ CCCACCTTCTTAAGAAAGAGGGTTGTACAAGTGTAGTTCTTGCGGGTACGAAAGGGCACG
JMFF022A17+ CCCACCTTCTTAAGAAAGAGGGTTGTACAAGTGTAGTTCTTGCGGGTACGAAAGGGCACG
JMFF020F01+ CCCACCTTCTTAAGAAAGAGGGTTGTACAAGTGTAGTTCTTGCGGGTACGAAAGGGCACG
JMFF036H05+ CCCACCTTCTTAAGAAAGAGGGTTGTACAAGTGTAGTTCTTGCGGGTACGAAAGGGCACG
JMSF011L12+ CCCACCTTCTTAAGAAAGAGGGTTGTACAAGTGTAGTTCTTGCGGGTACGAAAGGGCACG
JMSF010B17+ GGGTACGAAAGGGCACG
JMSF044G22+ CCCACCTTCTTAAGAAAGAGGGTTGTACAAGTGTAGTTCTTGCGGGTACGAAAGGGCACG
____________________________________________________________
consensus CCCACCTTCTTAAGAAAGAGGGTTGTACAAGTGTAGTTCTTGCGGGTACGAAAGGGCACG
. : . : . : . : . : . :
JMFF005O21+ TAGGCAGAGTGTGAACCAAAGGGAACAAGGGAATCTTAATCGTTGTTCCCTTGCTTGGTG
JMFF004L14+ TAGGCAGAGTGTGAACCAAAGGGAACAAGGGAATCTTAATCGTTGTTCCCTTGCTTGGTG
JMFF044G23+ TAGGCAGAGTGTGAACCAAAGGGAACAAGGGAATCTTAATCGTTGTTCCCTTGCTTGGTG
JMSF024P03+ TAGGCAGAGTGTGAACCAAAGGGAACAAGGGAATCTTAATCGTTGTTCCCTTGCTTGGTG
JMSF045L23+ TAGGCAGAGTGTGAACCAAAGGGAACAAGGGAATCTTAATCGTTGTTCCCTTGCTTGGTG
JMFF022A17+ TAGGCAGAGTGTGAACCAAAGGGAACAAGGGAATCTTAATCGTTGTTCCCTTGCTTGGTG
JMFF020F01+ TAGGCAGAGTGTGAACCAAAGGGAACAAGGGAATCTTAATCGTTGTTCCCTTGCTTGGTG
JMFF036H05+ TAGGCAGAGTGTGAACCAAAGGGAACAAAGGAATCTTAATCGTTGTTCCCTTGCTTGGTG
JMSF011L12+ TAGGCAGAGTGTGAACCAAAGGGAACAAGGGAATCTTAATCGTTGTTCCCTTGCTTGGTG
JMSF010B17+ TAGGCAGAGTGTGAACCAAAGGGAACAAGGGAATCTTAATCGTTGTTCCCTTGCTTGGTG
JMSF044G22+ TAGGCAGAGTGTGAACCAAAGGGAACAAGGGAATCTTAATCGTTGTTCCCTTGCTTGGTG
____________________________________________________________
consensus TAGGCAGAGTGTGAACCAAAGGGAACAAGGGAATCTTAATCGTTGTTCCCTTGCTTGGTG
. : . : . : . : . : . :
JMFF005O21+ TAATGAAAGGATGAGCATTCCGAAGAACCAAGCCCTGCATTTCTTCTCCAATTCTACTCC
JMFF004L14+ TAATGAAAGGATGAGCATTCCGAAGAACCAAGCCCTGCATTTCTTCTCCAATTCTACTCC
JMFF044G23+ TAATGAAAGGATGAGCATTCCGAAGAACCAAGCCCTGCATTTCTTCTCCAATTCTACTCC
JMSF024P03+ TAATGAAAGGATGAGCATTCCGAAGAACCAAGCCCTGCATTTCTTCTCCAATTCTACTCC
JMSF045L23+ TAATGAAAGGATGAGCATTCCGAAGAACCAAGCCCTGCATTTCTTCTCCAATTCTACTCC
JMFF022A17+ TAATGAAAGGATGAGCATTCCGAAGAACCAAGCCCTGCATTTCTTCTCCAATTCTACTCC
JMFF020F01+ TAATGAAAGGATGAGCATTCCGAAGAACCAAGCCCTGCATTTCTTCTCCAATTCTACTCC
JMFF036H05+ TAATGAAAGGATGAGCATTCCGAAGAACCAAGCCCTGCATTTCTTCTCCAATTCTACTCC
JMSF011L12+ TAATGAAAGGATGAGCATTCCGAAGAACCAAGCCCTGCATTTCTTCTCCAATTCTACTCC
JMSF010B17+ TAATGAAAGGATGAGCATTCCGAAGAACCAAGCCCTGCATTTCTTCTCCAATTCTACTCC
JMSF044G22+ TAATGAAAGGATGAGCATTCCGAAGAACCAAGCCCTGCATTTCTTCTCCAATTCTACTCC
____________________________________________________________
consensus TAATGAAAGGATGAGCATTCCGAAGAACCAAGCCCTGCATTTCTTCTCCAATTCTACTCC
. : . : . : . : . : . :
JMFF005O21+ GTACTACTAACAAAGGAGTTGCAGCTTACTGATACAGATTCATTTCTGAGAGATGAGAAT
JMFF004L14+ GTACTACTAACAAAGGAGTTGCAGCTTACTGATACAGATTCATTTCTGAGAGATGAGAAT
JMFF044G23+ GTACTACTAACAAAGGAGTTGCAGCTTACTGATACAGATTCATTTCTGAGAGATGAGAAT
JMSF024P03+ GTACTACTAACAAAGGAGTTGCAGCTTACTGATACAGATTCATTTCTGAGAGATGAGAAT
JMSF045L23+ GTACTACTAACAAAGGAGTTGCAGCTTACTGATACAGATTCATCTGTGAAGTTAAGGGAG
JMFF022A17+ GTACTACTAACAAAGGAGTTGCAGCTTACTGATACAGATTCATCTGTGAAGTTAAGGGAG
JMFF020F01+ GTACTACTAACAAAGGAGTTGCAGCTTACTGATACAGATTCATCTGTGAAGTTAAGGGAG
JMFF036H05+ GTACTACTAACAAAGGAGTTGCAGCTTACTGATACAGATTCAT
JMSF011L12+ GTACTACTAACAAAGGAGTTGCAGCTTACTGATACAGATTCATCTGTGAAGTTAAGGGAG
JMSF010B17+ GTACTACTAACAAAGGAGTTGCAGCTTACTGATACAGATTCATCTGTGAAGTTAAGGGAG
JMSF044G22+ GTACTACTAACAAAGGAGTTGCAGCTTACTGATACAGATTCATCTGTGAAGTTAAGGGAG
____________________________________________________________
consensus GTACTACTAACAAAGGAGTTGCAGCTTACTGATACAGATTCATCTGTGAAGTTAAGGGAG
. : . : . : . : . : . :
JMFF005O21+ CCGGTACCGGAACGCTTCAG--CTTGCCACGTGCACCAGAT
JMFF004L14+ CCGGTACCGGAACGCTTCAG--CTTGCCACGTGCACCAGAT
JMFF044G23+ CCGGTACCGGAACGCTTCAG--CTTGCCACGTGCACCAGAT
JMSF024P03+ CCGGTACC
JMSF045L23+ AAAGAAGAAGAAAAGGAGAGTTATTACAAAGGGAGTCAAAAAGACTGAATTTTTCCAAG
JMFF022A17+ AAAGAAGAAGAAAAGGAGAGTTATTACAAAGGG
JMFF020F01+ AAAGAAGAAGAAAAGGAGAGTTATTACAAAGGGAGTCAAAAAGACTGAATTTTTCC
JMSF011L12+ AAAGAAGAAGAAAAGGAGAGTTATTACAAAGGGAGTCAAAAAGACTGAATTTTTCCAAG
JMSF010B17+ AAAGAAGAAGAAAAGGAGAGTTATTACAAAGGGAGTCAAAAAGACTGAATTTTTCCAAG
JMSF044G22+ AAAGAAGAAGAAAAGGAGAGTTATTACAAAGGGAGTCAAAAAGACTGAATTTTTCCAAGA
____________________________________________________________
consensus AAAGAAGAAGAAAAGGAGAGTTATTACAAAGGGAGTCAAAAAGACTGAATTTTTCCAAGA
. : . : . : . : . : . :
JMSF044G22+ AAATTAGACCCTCTTCCCGGTATGAGTAAGTACTGACTTCTGAGAGATGAGAATCCTGTC
____________________________________________________________
consensus AAATTAGACCCTCTTCCCGGTATGAGTAAGTACTGACTTCTGAGAGATGAGAATCCTGTC