Contig 006691:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF004L14Sequence476006691 (11)ref|XP_009771287.1|3e-15PREDICTED: GDT1-like protein 2, chloroplastic isoform X2 [Nicotiana sylvestris]717005516 (10)ref|XP_004247813.1|4e-78PREDICTED: GDT1-like protein 2, chloroplastic [Solanum lycopersicum]
JMFF005O21Sequence491006691 (11)ref|XP_009618080.1|4e-29PREDICTED: GDT1-like protein 2, chloroplastic [Nicotiana tomentosiformis]672005516 (10)ref|XP_002518164.1|3e-55Transmembrane protein TPARL, putative [Ricinus communis] gb|EEF44297.1| Transmem
JMFF020F01Sequence507006691 (11)ref|XP_009618080.1|1e-29PREDICTED: GDT1-like protein 2, chloroplastic [Nicotiana tomentosiformis]662005516 (10)ref|XP_010023776.1|7e-41PREDICTED: GDT1-like protein 2, chloroplastic isoform X1 [Eucalyptus grandis] g
JMFF022A17Sequence571006691 (11)ref|XP_009618080.1|2e-47PREDICTED: GDT1-like protein 2, chloroplastic [Nicotiana tomentosiformis]729005516 (10)ref|XP_010023776.1|1e-45PREDICTED: GDT1-like protein 2, chloroplastic isoform X1 [Eucalyptus grandis] g
JMFF036H05Sequence506006691 (11)ref|XP_009618080.1|3e-30PREDICTED: GDT1-like protein 2, chloroplastic [Nicotiana tomentosiformis]732005516 (10)ref|XP_004247813.1|1e-78PREDICTED: GDT1-like protein 2, chloroplastic [Solanum lycopersicum]
JMFF044G23Sequence642006691 (11)ref|XP_009618080.1|7e-61PREDICTED: GDT1-like protein 2, chloroplastic [Nicotiana tomentosiformis]576005516 (10)ref|XP_002304693.2|1e-08hypothetical protein POPTR_0003s17320g [Populus trichocarpa] gb|EEE79672.2| hypo
JMSF010B17Sequence257006691 (11)736005516 (10)ref|XP_004247813.1|8e-90PREDICTED: GDT1-like protein 2, chloroplastic [Solanum lycopersicum]
JMSF011L12Sequence352006691 (11)ref|XP_009618080.1|5e-05PREDICTED: GDT1-like protein 2, chloroplastic [Nicotiana tomentosiformis]702005516 (10)ref|XP_004247813.1|5e-88PREDICTED: GDT1-like protein 2, chloroplastic [Solanum lycopersicum]
JMSF024P03Sequence658006691 (11)ref|XP_009618080.1|5e-72PREDICTED: GDT1-like protein 2, chloroplastic [Nicotiana tomentosiformis]
JMSF044G22Sequence768006691 (11)ref|XP_009618080.1|2e-71PREDICTED: GDT1-like protein 2, chloroplastic [Nicotiana tomentosiformis]747005516 (10)ref|XP_004247813.1|9e-88PREDICTED: GDT1-like protein 2, chloroplastic [Solanum lycopersicum]
JMSF045L23Sequence759006691 (11)ref|XP_009618080.1|1e-60PREDICTED: GDT1-like protein 2, chloroplastic [Nicotiana tomentosiformis]683005516 (10)ref|XP_004247813.1|3e-78PREDICTED: GDT1-like protein 2, chloroplastic [Solanum lycopersicum]

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF045L23+ AGATACATATTTAACGTCAAAAGTTCCACATGACCCAAGTCAGAGAA
                      ____________________________________________________________
consensus AGATACATATTTAACGTCAAAAGTTCCACATGACCCAAGTCAGAGAA
 
. : . : . : . : . : . :
JMSF024P03+ CCTATTACGACAGAGAAGATGGTCATAAGTGAAAGAGCACCCATTGATCC
JMSF045L23+ TTTTTCACAAACTAAAACTGCATATCAGAAAGAGGGTAGAGCAAG-------ATGTTGAG
JMSF044G22+ CTATTACGACAGAGAAGATGGTCATAAGTGAAAGAGCACCCATTGATCC
                      ____________________________________________________________
consensus TTTTTCACAACCTATTACGACAGAGAAGATGGTCATAAGTGAAAGAGCACCCATTGATCC
 
. : . : . : . : . : . :
JMFF044G23+ ACCAATAGTCTCTTGTATTGCATTGCCAATAGTGCAGCAATGAAAAATGTCTN
JMSF024P03+ CAGAAGAACCAATAGTCTCTTGTATTGCATTGCCAATAGTGCAGCAATGAAAAATGTCTT
JMSF045L23+ AACTCATACCAATAGTCTCTTGTATTGCATTGCCAATAGTGCAGCAATGAAAAATGTCTT
JMSF044G22+ CAGAAGAACCAATAGTCTCTTGTATTGCATTGCCAATAGTGCAGCAATGAAAAATGTCTT
                      ____________________________________________________________
consensus CAGAAGAACCAATAGTCTCTTGTATTGCATTGCCAATAGTGCAGCAATGAAAAATGTCTT
 
. : . : . : . : . : . :
JMFF044G23+ GTCGCCAATTTCAGATACAAATATCAGTGAGAATGCTGCAGTAAAGCCTGACTTCGAAAA
JMSF024P03+ GTCGCCAATTTCAGATACAAATATCAGTGAGAATGCTGCAGTAAAGCCTGACTTCGAAAA
JMSF045L23+ GTCGCCAATTTCAGATACAAATATCAGTGAGAATGCTGCAGTAAAGCCTGACTTCGAAAA
JMFF022A17+ TCGCCAATTTCAGATACAAATATCAGTGAGAATGCTGCAGTAAAGCCTGACTTCGAAAA
JMSF044G22+ GTCGCCAATTTCAGATACAAATATCAGTGAGAATGCTGCAGTAAAGCCTGACTTCGAAAA
                      ____________________________________________________________
consensus GTCGCCAATTTCAGATACAAATATCAGTGAGAATGCTGCAGTAAAGCCTGACTTCGAAAA
 
. : . : . : . : . : . :
JMFF005O21+ TTTTACAAAGGCAATCAGTGAAAATACCAAAGC
JMFF004L14+ AGTGAAAATCCCAAAGC
JMFF044G23+ TGCAGTTAAGATTGACGAAGGTCCTCCTTTTACAAAGGCAATCAGTGAAAATACCAAAGC
JMSF024P03+ TGCAGTTAAGATTGACGAAGGTCCTCCTTTTACAAAGGCAATCAGTGAAAATACCAAAGC
JMSF045L23+ TGCAGTTAAGATTGACGAAGGTCCTCCTTTTACAAAGGCAATCAGTGAAAATACCAAAGC
JMFF022A17+ TGCAGTTAAGATTGACGAAGGTCCTCCTTTTACAAAGGCAATCAGTGAAAATACCAAAGC
JMFF020F01+ TTTACAAAGGCAATCAGTGAAAATACCAAAGC
JMFF036H05+ TTTTACAAAGGCAATCAGTGAAAATACCAAAGC
JMSF044G22+ TGCAGTTAAGATTGACGAAGGTCCTCCTTTTACAAAGGCAATCAGTGAAAATACCAAAGC
                      ____________________________________________________________
consensus TGCAGTTAAGATTGACGAAGGTCCTCCTTTTACAAAGGCAATCAGTGAAAATACCAAAGC
 
. : . : . : . : . : . :
JMFF005O21+ GCATCCACATAGCACTAGAGCTATAGAGAGAGGATAAGGAATTTGATTTGGAAGCTTCTC
JMFF004L14+ GCATCCACATAGCACTAGAGCTATAGAGAGAGGATAAGGAATTTGATTTGGAAGCTTCTC
JMFF044G23+ GCATCCACATAGCACTAGAGCTATAGAGAGAGGATAAGGAATTTGATTTGGAAGCTTCTC
JMSF024P03+ GCATCCACATAGCACTAGAGCTATAGAGAGAGGATAAGGAATTTGATTTGGAAGCTTCTC
JMSF045L23+ GCATCCACATAGCACTAGAGCTATAGAGAGAGGATAAGGAATTTGATTTGGAAGCTTCTC
JMFF022A17+ GCATCCACATAGCACTAGAGCTATAGAGAGAGGATAAGGAATTTGATTTGGAAGCTTCTC
JMFF020F01+ GCATCCACATAGCACTAGAGCTATAGAGAGAGGATAAGGAATTTGATTTGGAAGCTTCTC
JMFF036H05+ GCATCCACATAGCACTAGAGCTATAGAGAGAGGATAAGGAATTTGATTTGGAAGCTTCTC
JMSF044G22+ GCATCCACATAGCACTAGAGCTATAGAGAGAGGATAAGGAATTTGATTTGGAAGCTTCTC
                      ____________________________________________________________
consensus GCATCCACATAGCACTAGAGCTATAGAGAGAGGATAAGGAATTTGATTTGGAAGCTTCTC
 
. : . : . : . : . : . :
JMFF005O21+ ATCTTTA-GCTGAAGTATCTATAGGTGGCTCACTGAATTCTTCATAACCCCCTGATCCAA
JMFF004L14+ ATCTTTAGGCTGAAGTATCTATAGGTGGCTCACTGAATTCTTCATAACCCCCTGATCCAA
JMFF044G23+ ATCTTTA-GCTGAAGTATCTATAGGTGGCTCACTGAATTCTTCATAACCCCCTGATCCAA
JMSF024P03+ ATCTTTA-GCTGAAGTATCTATAGGTGGCTCACTGAATTCTTCATAACCCCCTGATCCAA
JMSF045L23+ ATCTTTA-GCTGAAGTATCTATAGGTGGCTCACTGAATTCTTCATAACCCCCTGATCCAA
JMFF022A17+ ATCTTTA-GCTGAAGTATCTATAGGTGGCTCACTGAATTCTTCATAACCCCCTGATCCAA
JMFF020F01+ ATCTTTA-GCTGAAGTATCTATAGGTGGCTCACTGAATTCTTCATAACCCCCTGATCCAA
JMFF036H05+ ATCTTTA-GCTGAAGTATCTATAGGTGGCTCACTGAATTCTTCATAACCCCCTGATCCAA
JMSF044G22+ ATCTTTA-GCTGAAGTATCTATAGGTGGCTCACTGAATTCTTCATAACCCCCTGATCCAA
                      ____________________________________________________________
consensus ATCTTTA-GCTGAAGTATCTATAGGTGGCTCACTGAATTCTTCATAACCCCCTGATCCAA
 
. : . : . : . : . : . :
JMFF005O21+ TGCCAACATTAGATGCATGTGACGTTGTTCTGCAGTGCCTCCAGCGCAGCTTAGGCAGCT
JMFF004L14+ TGCCAACATTAGATGCATGTGACGTTGTTCTGCAGTGCCTCCAGTGCAGCTTAGGCAGCT
JMFF044G23+ TGCCAACATTAGATGCATGTGACGTTGTTCTGCAGTGCCTCCAGTGCAGCTTAGGCAGCT
JMSF024P03+ TGCCAACATTAGATGCATGTGACGTTGTTCTGCAGTGCCTCCAGTGCAGCTTAGGCAGCT
JMSF045L23+ TGCCAACATTAGATGCATGTGACGTTGTTCTGCAGTGCCTCCAGTGCAGCTTAGGCAGCT
JMFF022A17+ TGCCAACATTAGATGCATGTGACGTTGTTCTGCAGTGCCTCCAGTGCAGCTTAGGCAGCT
JMFF020F01+ TGCCAACATTAGATGCATGTGACGTTGTTCTGCAGTGCCTCCAGTGCAGCTTAGGCAGCT
JMFF036H05+ TGCCAACATTAGATGCATGTGACGTTGTTCTGCAGTGCCTCCAGTGCAGCTTAGGCAGCT
JMSF011L12+ TTAGATGCATGTGACGTTGTTCTGCAGTGCCTCCAGTGCAGCTTAGGCAGCT
JMSF044G22+ TGCCAACATTAGATGCATGTGACGTTGTTCTGCAGTGCCTCCAGTGCAGCTTAGGCAGCT
                      ____________________________________________________________
consensus TGCCAACATTAGATGCATGTGACGTTGTTCTGCAGTGCCTCCAGTGCAGCTTAGGCAGCT
 
. : . : . : . : . : . :
JMFF005O21+ CCCACCTTCTTAAGAAAGAGGGTTGTACAAGTGTAGTTCTTGCGGGTACGAAAGGGCACG
JMFF004L14+ CCCACCTTCTTAAGAAAGAGGGTTGTACAAGTGTAGTTCTTGCGGGTACGAAAGGGCACG
JMFF044G23+ CCCACCTTCTTAAGAAAGAGGGTTGTACAAGTGTAGTTCTTGCGGGTACGAAAGGGCACG
JMSF024P03+ CCCACCTTCTTAAGAAAGAGGGTTGTACAAGTGTAGTTCTTGCGGGTACGAAAGGGCACG
JMSF045L23+ CCCACCTTCTTAAGAAAGAGGGTTGTACAAGTGTAGTTCTTGCGGGTACGAAAGGGCACG
JMFF022A17+ CCCACCTTCTTAAGAAAGAGGGTTGTACAAGTGTAGTTCTTGCGGGTACGAAAGGGCACG
JMFF020F01+ CCCACCTTCTTAAGAAAGAGGGTTGTACAAGTGTAGTTCTTGCGGGTACGAAAGGGCACG
JMFF036H05+ CCCACCTTCTTAAGAAAGAGGGTTGTACAAGTGTAGTTCTTGCGGGTACGAAAGGGCACG
JMSF011L12+ CCCACCTTCTTAAGAAAGAGGGTTGTACAAGTGTAGTTCTTGCGGGTACGAAAGGGCACG
JMSF010B17+ GGGTACGAAAGGGCACG
JMSF044G22+ CCCACCTTCTTAAGAAAGAGGGTTGTACAAGTGTAGTTCTTGCGGGTACGAAAGGGCACG
                      ____________________________________________________________
consensus CCCACCTTCTTAAGAAAGAGGGTTGTACAAGTGTAGTTCTTGCGGGTACGAAAGGGCACG
 
. : . : . : . : . : . :
JMFF005O21+ TAGGCAGAGTGTGAACCAAAGGGAACAAGGGAATCTTAATCGTTGTTCCCTTGCTTGGTG
JMFF004L14+ TAGGCAGAGTGTGAACCAAAGGGAACAAGGGAATCTTAATCGTTGTTCCCTTGCTTGGTG
JMFF044G23+ TAGGCAGAGTGTGAACCAAAGGGAACAAGGGAATCTTAATCGTTGTTCCCTTGCTTGGTG
JMSF024P03+ TAGGCAGAGTGTGAACCAAAGGGAACAAGGGAATCTTAATCGTTGTTCCCTTGCTTGGTG
JMSF045L23+ TAGGCAGAGTGTGAACCAAAGGGAACAAGGGAATCTTAATCGTTGTTCCCTTGCTTGGTG
JMFF022A17+ TAGGCAGAGTGTGAACCAAAGGGAACAAGGGAATCTTAATCGTTGTTCCCTTGCTTGGTG
JMFF020F01+ TAGGCAGAGTGTGAACCAAAGGGAACAAGGGAATCTTAATCGTTGTTCCCTTGCTTGGTG
JMFF036H05+ TAGGCAGAGTGTGAACCAAAGGGAACAAAGGAATCTTAATCGTTGTTCCCTTGCTTGGTG
JMSF011L12+ TAGGCAGAGTGTGAACCAAAGGGAACAAGGGAATCTTAATCGTTGTTCCCTTGCTTGGTG
JMSF010B17+ TAGGCAGAGTGTGAACCAAAGGGAACAAGGGAATCTTAATCGTTGTTCCCTTGCTTGGTG
JMSF044G22+ TAGGCAGAGTGTGAACCAAAGGGAACAAGGGAATCTTAATCGTTGTTCCCTTGCTTGGTG
                      ____________________________________________________________
consensus TAGGCAGAGTGTGAACCAAAGGGAACAAGGGAATCTTAATCGTTGTTCCCTTGCTTGGTG
 
. : . : . : . : . : . :
JMFF005O21+ TAATGAAAGGATGAGCATTCCGAAGAACCAAGCCCTGCATTTCTTCTCCAATTCTACTCC
JMFF004L14+ TAATGAAAGGATGAGCATTCCGAAGAACCAAGCCCTGCATTTCTTCTCCAATTCTACTCC
JMFF044G23+ TAATGAAAGGATGAGCATTCCGAAGAACCAAGCCCTGCATTTCTTCTCCAATTCTACTCC
JMSF024P03+ TAATGAAAGGATGAGCATTCCGAAGAACCAAGCCCTGCATTTCTTCTCCAATTCTACTCC
JMSF045L23+ TAATGAAAGGATGAGCATTCCGAAGAACCAAGCCCTGCATTTCTTCTCCAATTCTACTCC
JMFF022A17+ TAATGAAAGGATGAGCATTCCGAAGAACCAAGCCCTGCATTTCTTCTCCAATTCTACTCC
JMFF020F01+ TAATGAAAGGATGAGCATTCCGAAGAACCAAGCCCTGCATTTCTTCTCCAATTCTACTCC
JMFF036H05+ TAATGAAAGGATGAGCATTCCGAAGAACCAAGCCCTGCATTTCTTCTCCAATTCTACTCC
JMSF011L12+ TAATGAAAGGATGAGCATTCCGAAGAACCAAGCCCTGCATTTCTTCTCCAATTCTACTCC
JMSF010B17+ TAATGAAAGGATGAGCATTCCGAAGAACCAAGCCCTGCATTTCTTCTCCAATTCTACTCC
JMSF044G22+ TAATGAAAGGATGAGCATTCCGAAGAACCAAGCCCTGCATTTCTTCTCCAATTCTACTCC
                      ____________________________________________________________
consensus TAATGAAAGGATGAGCATTCCGAAGAACCAAGCCCTGCATTTCTTCTCCAATTCTACTCC
 
. : . : . : . : . : . :
JMFF005O21+ GTACTACTAACAAAGGAGTTGCAGCTTACTGATACAGATTCATTTCTGAGAGATGAGAAT
JMFF004L14+ GTACTACTAACAAAGGAGTTGCAGCTTACTGATACAGATTCATTTCTGAGAGATGAGAAT
JMFF044G23+ GTACTACTAACAAAGGAGTTGCAGCTTACTGATACAGATTCATTTCTGAGAGATGAGAAT
JMSF024P03+ GTACTACTAACAAAGGAGTTGCAGCTTACTGATACAGATTCATTTCTGAGAGATGAGAAT
JMSF045L23+ GTACTACTAACAAAGGAGTTGCAGCTTACTGATACAGATTCATCTGTGAAGTTAAGGGAG
JMFF022A17+ GTACTACTAACAAAGGAGTTGCAGCTTACTGATACAGATTCATCTGTGAAGTTAAGGGAG
JMFF020F01+ GTACTACTAACAAAGGAGTTGCAGCTTACTGATACAGATTCATCTGTGAAGTTAAGGGAG
JMFF036H05+ GTACTACTAACAAAGGAGTTGCAGCTTACTGATACAGATTCAT
JMSF011L12+ GTACTACTAACAAAGGAGTTGCAGCTTACTGATACAGATTCATCTGTGAAGTTAAGGGAG
JMSF010B17+ GTACTACTAACAAAGGAGTTGCAGCTTACTGATACAGATTCATCTGTGAAGTTAAGGGAG
JMSF044G22+ GTACTACTAACAAAGGAGTTGCAGCTTACTGATACAGATTCATCTGTGAAGTTAAGGGAG
                      ____________________________________________________________
consensus GTACTACTAACAAAGGAGTTGCAGCTTACTGATACAGATTCATCTGTGAAGTTAAGGGAG
 
. : . : . : . : . : . :
JMFF005O21+ CCGGTACCGGAACGCTTCAG--CTTGCCACGTGCACCAGAT
JMFF004L14+ CCGGTACCGGAACGCTTCAG--CTTGCCACGTGCACCAGAT
JMFF044G23+ CCGGTACCGGAACGCTTCAG--CTTGCCACGTGCACCAGAT
JMSF024P03+ CCGGTACC
JMSF045L23+ AAAGAAGAAGAAAAGGAGAGTTATTACAAAGGGAGTCAAAAAGACTGAATTTTTCCAAG
JMFF022A17+ AAAGAAGAAGAAAAGGAGAGTTATTACAAAGGG
JMFF020F01+ AAAGAAGAAGAAAAGGAGAGTTATTACAAAGGGAGTCAAAAAGACTGAATTTTTCC
JMSF011L12+ AAAGAAGAAGAAAAGGAGAGTTATTACAAAGGGAGTCAAAAAGACTGAATTTTTCCAAG
JMSF010B17+ AAAGAAGAAGAAAAGGAGAGTTATTACAAAGGGAGTCAAAAAGACTGAATTTTTCCAAG
JMSF044G22+ AAAGAAGAAGAAAAGGAGAGTTATTACAAAGGGAGTCAAAAAGACTGAATTTTTCCAAGA
                      ____________________________________________________________
consensus AAAGAAGAAGAAAAGGAGAGTTATTACAAAGGGAGTCAAAAAGACTGAATTTTTCCAAGA
 
. : . : . : . : . : . :
JMSF044G22+ AAATTAGACCCTCTTCCCGGTATGAGTAAGTACTGACTTCTGAGAGATGAGAATCCTGTC
                      ____________________________________________________________
consensus AAATTAGACCCTCTTCCCGGTATGAGTAAGTACTGACTTCTGAGAGATGAGAATCCTGTC