Contig 006682:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMFF047O02-             ACCCTGGAGAGTTTTTTTTTTTTTTTTCGACACAATAAATAACTACTCATATAAATA
rJMFF045M04-             ACCCTGGAGAGTTTTTTTTTTTTTTTTCGACACAATAAATAACTACTCATATAAATA
                      ____________________________________________________________
consensus                ACCCTGGAGAGTTTTTTTTTTTTTTTTCGACACAATAAATAACTACTCATATAAATA
 
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rJMFF047O02-          AACTTTGATAAAACTTAAAACCCCAACAAAGAATTACATATTCATGAAGAGGAGGATTGA
rJMFF045M04-          AACTTTGATAAAACTTAAAACCCCAACAAAGAATTACATATTCATGAAGAGGAGGATTGA
rJMSF043L24-                                                  TTCATGAAGAGGAGGATTGA
rJMFF014E16-           ACTTTGATAAAACTTAAAACACCAACAAAGAATTACATATTCATGAAGAGGAGGATTGA
                      ____________________________________________________________
consensus             AACTTTGATAAAACTTAAAACCCCAACAAAGAATTACATATTCATGAAGAGGAGGATTGA
 
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rJMFF047O02-          GGATCTTAGCCCCCCACCCTTCACATACAAACTAAAACTACTATCAGCTAATGCCAAATT
rJMFF045M04-          GGATCTTAGCCCCCCACCCTTCACATACAAACTAAAACTACTATCAGCTAATGCCAAATT
rJMFF039J18-                                                        GCTAATGCCAAATT
rJMSF043L24-          GGATCTTAGCCCCCCACCCTTCACATACAAACTAAAACTACTATCAGCTAATGCCAAATT
rJMFF014E16-          GGATCTTAGCCCCCCACCCTTCACATACAAACTAAAACTACTATCAGCTAATGCCAAATT
                      ____________________________________________________________
consensus             GGATCTTAGCCCCCCACCCTTCACATACAAACTAAAACTACTATCAGCTAATGCCAAATT
 
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rJMFF047O02-          ATTCTTGTAGAAGCCTACATATATCGTTTAGGATAAGACAAATACCTA-GATAACACAAC
rJMFF045M04-          ATTCTTGTAGAAGCCTACATATATCGTTTAGGATAAGACAAATACCTA-GATAACACAAC
rJMFF039J18-          ATTCTTGTACAAGCCTACATATATCGTTTAGGATAAGACAAATACCTATCATAACACAAC
rJMSF043L24-          ATTCTTGTAGAAGCCTACATATATCGTTTAGGATAAGACAAATACCTA-GATAACACAAC
rJMFF014E16-          ATTCTTGTAGAAGCCTACATATATCGTTTAGGATAAGACAAATACCTA-GATAACACAAC
                      ____________________________________________________________
consensus             ATTCTTGTAGAAGCCTACATATATCGTTTAGGATAAGACAAATACCTA-GATAACACAAC
 
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rJMFF047O02-          ATGGGACTAGGAAACACTATATATATATAGTATGGGCAAAGTTAACCAAGGAGTAAGAGC
rJMFF045M04-          ATGGGACTAGGAAACACTATATATATATAGTATGGGCAAAGTTAACCAAGGAGTAAGAGC
rJMFF039J18-          ATGGGACTAGGAAACACTATATATATATAGTATGGGCAAAGNTAACCNNGGAGTAAGAGC
rJMSF043L24-          ATGGGACTAGGAAACACTATATATATATAGTATGGGCAAAGTTAACCAAGGAGTAAGAGC
rJMFF014E16-          ATGGGACTAGGAAACACTATATATATATAGTATGGGCAAAGTTAACCAAGGAGTAAGAGC
                      ____________________________________________________________
consensus             ATGGGACTAGGAAACACTATATATATATAGTATGGGCAAAGTTAACCAAGGAGTAAGAGC
 
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rJMFF047O02-          TATTCTGTTACTTCCATTACTACTACTACTACTTGATCAAGGCAGGAACCTGGAAATGAA
rJMFF045M04-          TACTCTGTTACTTCCATTACTACTACTACTACTTGATCAAGGCAGGAACCTGGAAATGAA
rJMFF039J18-          TATTCTGTTACTTCCATTACTACTACTACTACTTGATCAAGGCAGGAACCTGNAAATGAA
rJMSF043L24-          TATTCTGTTACTTCCATTACTACTACTACTACTTGATCAAGGCAGGAACCTGGAAATGAA
rJMFF014E16-          TATTCTGTTACTTCCATTACTACTACTACTACTTGATCAAGGCAGGAACCTGGAAATGAA
                      ____________________________________________________________
consensus             TATTCTGTTACTTCCATTACTACTACTACTACTTGATCAAGGCAGGAACCTGGAAATGAA
 
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rJMFF047O02-          AGAGGCTTGACGAATTGCTTTGCCAATCCGACCTTCCCCTTGAAAAAATAAGGG      
rJMFF045M04-          AGAGGCTTGACGAATTGCTTTGCCAATCCGACCTTCCCCTTGAAAAAATAAGGGAAGCAA
rJMFF039J18-          AGAGGCTTGACGAATTGCTTTGCNNNTCCNACCTTCCCCTTGANAAAATAAGGGAAGCAA
rJMSF043L24-          AGAGGCTTGACGAATTGCTTTGCCAATCCGACCTTCCCCTTGAAAAAATAAGGGAAGCAA
rJMFF014E16-          AGAGGCTTGACGAATTGCTTTGCCAATCCGACCTTCCCCTTGAAAAAATAAGGGAAGCAA
                      ____________________________________________________________
consensus             AGAGGCTTGACGAATTGCTTTGCCAATCCGACCTTCCCCTTGAAAAAATAAGGGAAGCAA
 
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rJMFF045M04-          CTGCGAATTGGAGCGAGCGATTAACCAAACTTGCAACATTTTCAACCCACAAAGCACTAG
rJMFF039J18-          CTGC                                                        
rJMSF043L24-          CTGCGAATTGGAGCGAGCGATTAACCAAACTTGCAACATTTTCAACCCACAAAGCACTAG
rJMFF014E16-          CTGCGAATTGGAGCGAGCGATTAACCAAACTTGCAACATTTTCAACCCACAAAGCACTAG
                      ____________________________________________________________
consensus             CTGCGAATTGGAGCGAGCGATTAACCAAACTTGCAACATTTTCAACCCACAAAGCACTAG
 
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rJMFF045M04-          ACTTTTAGCTTTCCAACTGAACGTTCTTCAAGTCGACCCGGGAGAGAATAAAGAGAAACC
rJMSF043L24-          ACTTTTAGCTTTCCAACTGAACGTTCTTCAAGTCGACCCGGGAGAGAATAAAGAGAAACC
rJMFF014E16-          ACTTTTAGCTTTCCAACTGAACGTTCTTCAAGTCGACCCGGGAGAGAATAAAGAGAAACC
                      ____________________________________________________________
consensus             ACTTTTAGCTTTCCAACTGAACGTTCTTCAAGTCGACCCGGGAGAGAATAAAGAGAAACC
 
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rJMFF045M04-          CTTTTTCGGTTGTTCTATACAAACTCACGACGGATCCAGCCTCAGAAGCCGCCGCAAACC
rJMSF043L24-          CTTTTTCGGTTGTTCTATACAAACTCACGACGGATCCAGCCTCAGAAGCCGCCGCAAACC
rJMFF014E16-          CTTTTTCGGTTGTTCTATACAAACTCACGACGGATCCAGCCTCAGAAGCCGCCGCAAACC
                      ____________________________________________________________
consensus             CTTTTTCGGTTGTTCTATACAAACTCACGACGGATCCAGCCTCAGAAGCCGCCGCAAACC
 
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rJMFF045M04-          GCTAGAAGCGTCGTCGTGGATCTCGGCGGCGAGGACGCTCTTTTTCTTA           
rJMSF043L24-          GCTAGAAGCGTCGTCGTGGATCTCGGCGGCGAGGACGCTCTTTTTCTTAAAGAAAGCAGG
rJMFF014E16-          GCTAGAAGCGTCGTCGTGGATCTCGGCGGCGAGGACGCTCTTTTTCTTAAAGAAAGCAGG
                      ____________________________________________________________
consensus             GCTAGAAGCGTCGTCGTGGATCTCGGCGGCGAGGACGCTCTTTTTCTTAAAGAAAGCAGG
 
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rJMSF043L24-          CACGGGAAGGGAACTGGGCGGG                                      
rJMFF014E16-          CACGGGAAGGGAACTGGGCGGGGGAGAGGAGATGAAGGCCGATCCGGCGTAAAAATCGGC
                      ____________________________________________________________
consensus             CACGGGAAGGGAACTGGGCGGGGGAGAGGAGATGAAGGCCGATCCGGCGTAAAAATCGGC
 
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rJMFF014E16-          GATCTTGATCTGCTTTGGAACCATATCGGGCTCCGGCCCGAGCCGATCCGTGGTCGACAA
JMFF045M04+                         TTGGAACCATATCGGGCTCCGGCCCGAGCCGATCCGTGGTCGACAA
                      ____________________________________________________________
consensus             GATCTTGATCTGCTTTGGAACCATATCGGGCTCCGGCCCGAGCCGATCCGTGGTCGACAA
 
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rJMFF014E16-          AGCCAAGTCGTCGTCCACCTCCGGC                                   
JMFF045M04+           AGCCAAGTCGTCGTCCACCTCCGGCGGACAAGAATTCACCTCGCTCTTCTCCCGAGCCTT
                      ____________________________________________________________
consensus             AGCCAAGTCGTCGTCCACCTCCGGCGGACAAGAATTCACCTCGCTCTTCTCCCGAGCCTT
 
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JMFF045M04+           CTCGCCCTCCATCTTCTTCCTCTCCAAGCCATCCTTCATCGACACAGTCAACGCTTCGCC
                      ____________________________________________________________
consensus             CTCGCCCTCCATCTTCTTCCTCTCCAAGCCATCCTTCATCGACACAGTCAACGCTTCGCC
 
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JMFF047O02+                                                       TGGCCGGCGGAGAGCT
JMFF045M04+           GCGCTTCAAAATCTTGACCTGACCCATCACCAGATGCCGGTTCTTGGCCGGCGGAGAGCT
JMSF043L24+               TTCAAAATNTTGNCCTGACCCNTCCCCCGATGCCGGTTTTTGGCCGGCGGAGAGCT
                      ____________________________________________________________
consensus             GCGCTTCAAAATCTTGACCTGACCCATCCCCCGATGCCGGTTTTTGGCCGGCGGAGAGCT
 
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JMFF047O02+           GGACAAGCTGCCGCAGCCGCCTCTACTAGTATTATTACTATTCCTACTGTTCTTCTGAGG
JMFF045M04+           GGACAAGCTGCCGCAGCCGCCTCTACTAGTATTATTACTATTCCTACTGCTCTTCTGAGG
JMSF043L24+           GGACNAGCTGCCGCNGCCGCCTNTACTAGTNTTATTACTNTTCCTACTGCTNTTTTGNGG
                      ____________________________________________________________
consensus             GGACAAGCTGCCGCAGCCGCCTCTACTAGTATTATTACTATTCCTACTGCTCTTCTGAGG
 
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JMFF047O02+           ACTCCGCTTCCGCCGATTCGACTTATCGGATCCATGGTTAGGGTTAGAAGAAGAAGGAGA
JMFF045M04+           ACTCCGCTTCCGCCGATTCGACTTATCGGATCCATGGTTAGGGTTAGAAGAAGAAGGAGA
JMFF014E16+                                             TGGTTAGGGTTAGAAGAAGAAGGAGA
JMSF043L24+           NCTCCGCTTCCGCCGNTTNGACTTNTTGGATCCCTGGTTNGGGTTAGAAGAAGAAGGNGA
                      ____________________________________________________________
consensus             ACTCCGCTTCCGCCGATTCGACTTATCGGATCCATGGTTAGGGTTAGAAGAAGAAGGAGA
 
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JMFF047O02+           AGTTTTCTTGGATTTGGGTGAGGGAAAACTGGAATTAACAAAAGTATTGTGACGATTATA
JMFF045M04+           AGTTTTCTTGGATTTGGGTGAGGGAAAACTGGAATTAACAAAAGTATTGTGACGATTATA
JMFF014E16+           AGTTTTTTTGGATTTGGGNGNGGGAAAACTGGAATTAACAAAAGTNTTGTGNCGATTATA
JMSF043L24+           AGTTTTNTTGGATTTGGGNGNGGGAAAACNGGAATTAACNAAAGTNTTGNGNCGNTTNTN
                      ____________________________________________________________
consensus             AGTTTTCTTGGATTTGGGTGAGGGAAAACTGGAATTAACAAAAGTATTGTGACGATTATA
 
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JMFF047O02+           AGCTAGCCGATCCTTTAAAGGATCTTGAGGACGAAGAACTGCGATTTCACCCATCGGAAA
JMFF045M04+           AGCTAGCCGATCCTTTAAAGGATCTTGAGGACGAAGAACTGCGATTTCACCCATCGGAAA
JMFF014E16+           AGCTAGCCGATCCTTTAAAGGATNTTGAGGNCGAAGAACTGCGATTTCCCCCNTNGGAAA
JMSF043L24+           AGCTNGCCGNTCCNTTAAAGGNTNTTGNGGNCGAAGAACTGCGATTTCCCCCCTNGGAAA
                      ____________________________________________________________
consensus             AGCTAGCCGATCCTTTAAAGGATCTTGAGGACGAAGAACTGCGATTTCCCCCATCGGAAA
 
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JMFF047O02+           GTAACACAACAGATTGGGATCAAGAAAAAAAAAAACAGATGAAAAATATGTATATAAATA
JMFF045M04+           GTAACACAACAGATTGGGATCAAGAAAAAAAAAAACAGATGAAAAATATGTATATAAATA
JMFF039J18+                                       AAAAAANCAGATGAAAAATATGTATATAAATA
JMFF014E16+           GTAACCCNACNGATTGGGATCAAGAAAAAAAAAAACAGATGAAAAATATGTATATAAATA
JMSF043L24+           GTAACCCNACNGNTTGGGNTCNAGAAAAAAAAAAACAGATGAAAAATATGTATATAAATA
                      ____________________________________________________________
consensus             GTAACCCAACAGATTGGGATCAAGAAAAAAAAAAACAGATGAAAAATATGTATATAAATA
 
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JMFF047O02+           AAAAAGCGAGAAAATTGAGATCTAACGTTGATCTGTAACTACAGAAAGATAGCAGATCTG
JMFF045M04+           AAAAAGCGAGAAAATTGAGATCTAACGTTGATCTGTAACTACAGAAAGATAGCAGATCTG
JMFF039J18+           AAAAAGCGAGAAAATTGAGATCTAACGTTGATCTGTAANTACAGAAAGATANCAGATCTG
JMFF014E16+           AAAAAGCGAGAAAATTGAGATCTAACGTTGATCTGTAACTACAGAAAGATAGCAGATCTG
JMSF043L24+           AAAAAGCGAGAAAATTGAGATCTAACGTTGATCTGTAACTACAGAAAGATAGCAGATCTG
                      ____________________________________________________________
consensus             AAAAAGCGAGAAAATTGAGATCTAACGTTGATCTGTAACTACAGAAAGATAGCAGATCTG
 
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JMFF047O02+           AAGAAAAAAGAGAGCATTTCGAAGTTAATTTCGTGAGAGGTGTGGTGTGTACAGAGAA  
JMFF045M04+           AAGAAAAAAGAGAGCATTTCGAAGTTAATTTCGTGAGAGGTGTGGTGTGTACAGAGAA  
JMFF039J18+           AAGAAAAAAGAGAGCATTTCGAAGTTAATTTCGTGAGAGGTGTGGTGTNTACAGA     
JMFF014E16+           AAGAAAAAAGAGAGCATTTCGAAGTTAATTTCGTGAGAGGTGTGGTGTGTACAGAGAA  
JMSF043L24+           AAGAAAAAAGAGAGCATTTCGAAGTTAATTTCGTGAGAGGTGTGGTGTGTACAGAGAATC
                      ____________________________________________________________
consensus             AAGAAAAAAGAGAGCATTTCGAAGTTAATTTCGTGAGAGGTGTGGTGTGTACAGAGAATC