Contig 006637:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF014G14Sequence498006637 (8)emb|CDO99530.1|2e-45unnamed protein product [Coffea canephora]760005477 (6)ref|XP_009758822.1|4e-120PREDICTED: eukaryotic translation initiation factor 3 subunit D-like [Nicotiana
JMFF015I20Sequence584006637 (8)emb|CDO99530.1|5e-43unnamed protein product [Coffea canephora]734005477 (6)ref|XP_009758822.1|3e-97PREDICTED: eukaryotic translation initiation factor 3 subunit D-like [Nicotiana
JMFF037L16Sequence521006637 (8)emb|CDO99530.1|4e-51unnamed protein product [Coffea canephora]701005477 (6)ref|XP_009758822.1|2e-93PREDICTED: eukaryotic translation initiation factor 3 subunit D-like [Nicotiana
JMFF038G04Sequence499006637 (8)emb|CDO99530.1|1e-50unnamed protein product [Coffea canephora]791005477 (6)ref|XP_009758822.1|2e-115PREDICTED: eukaryotic translation initiation factor 3 subunit D-like [Nicotiana
JMFF043I22Sequence616006637 (8)ref|XP_009627997.1|2e-58PREDICTED: eukaryotic translation initiation factor 3 subunit D {ECO:0000255|HA572009783 (2)ref|XP_009758822.1|5e-49PREDICTED: eukaryotic translation initiation factor 3 subunit D-like [Nicotiana
JMFS019B08Sequence551006637 (8)ref|XP_009758822.1|1e-54PREDICTED: eukaryotic translation initiation factor 3 subunit D-like [Nicotiana
JMSF031F05Sequence671006637 (8)ref|XP_009758822.1|2e-75PREDICTED: eukaryotic translation initiation factor 3 subunit D-like [Nicotiana791005477 (6)ref|XP_009758822.1|4e-129PREDICTED: eukaryotic translation initiation factor 3 subunit D-like [Nicotiana
JMSF038L12Sequence659006637 (8)ref|XP_009758822.1|3e-64PREDICTED: eukaryotic translation initiation factor 3 subunit D-like [Nicotiana958005477 (6)ref|XP_009758822.1|9e-165PREDICTED: eukaryotic translation initiation factor 3 subunit D-like [Nicotiana

Alignment

This contig is upended


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JMFF043I22+                                                    GAAGGTGGAGAAGGGGATC
JMSF031F05+                            CGGAACAGAAAAGGAGAGCTTCGTGAAGGTGGAGAAGGGGATC
                      ____________________________________________________________
consensus                              CGGAACAGAAAAGGAGAGCTTCGTGAAGGTGGAGAAGGGGATC
 
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JMFF043I22+           TGGTCGAGCATATTCCACTCCGGTAGGATATCAACTGAGGACTTAAAGACTGCAGACTCG
JMSF031F05+           TGATCAAGCATGTTCCATTCTGGCTGGATATCGACGGAGGACTTGAACACCGAAGACTCG
JMFF015I20+                                                                     CG
                      ____________________________________________________________
consensus             TGGTCGAGCATGTTCCATTCTGGTTGGATATCGACTGAGGACTTGAAGACTGCAGACTCG
 
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JMFS019B08+                                                           GTCACGGCGGGC
JMFF043I22+           CGGCGTTGGCCAGCATTGGTGCCGGAGCGATTGAGGTGTAAAGG--CGGTCACGGCGAGC
JMSF031F05+           CGGCGTTGGCCGGCATTGATACCGGAGCGGTTGAGATTGTAGAG-CCTGTCACGGCGGGC
JMFF015I20+           CGGCGTTGGCCGGCATTGATACCGGAGCGGTTGAGATTGTAGAGCCCTGTCACGGCGGGC
JMSF038L12+                                                           GTCACGGCGGGC
                      ____________________________________________________________
consensus             CGGCGTTGGCCGGCATTGATACCGGAGCGGTTGAGATTGTAGAG-CCTGTCACGGCGGGC
 
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JMFS019B08+           TCGTTCCTTCTCGGCCTCGCGCTTGCGAGCCTCCACCTCCTCGTCACGGCGCTGAGGGAG
JMFF043I22+           ACGTTCCTTCTCTGCCTCGCGCTTGCGTGCCTCCACCTCCTCGTCTCGGCGCTGAGGGAG
JMSF031F05+           TCGTTCCTTCTCGGCCTCGCGCTTGCGAGCCTCCACCTCCTCGTCACGGCGCTGAGGGAG
JMFF038G04+                                CTTGCGAGCCTCCACCTCCTCGTCACGGCGCTGAGGGAG
JMFF015I20+           TCGTTCCTTCTCGGCCTCGCGCTTGCGAGCCTCCACCTCCTCGTCACGGCGCTGAGGGAG
JMFF037L16+                         CCTCGCGCTTGCGAGCCTCCACCTCCTCGTCACGGCGNTGAGGGAG
JMFF014G14+                                                    CGTCACGGCGCTGAGGGAG
JMSF038L12+           TCGTTCCTTCTCGGCCTCGCGCTTGCGAGCCTCCACCTCCTCGTCACGGCGCTGAGGGAG
                      ____________________________________________________________
consensus             TCGTTCCTTCTCGGCCTCGCGCTTGCGAGCCTCCACCTCCTCGTCACGGCGCTGAGGGAG
 
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JMFS019B08+           CTGAGAGCGCTGGTGGTGCGGATTGAATCGCCACCTAGGGTTGAACCTGGGACGGTGCTG
JMFF043I22+           CTGAGAGCGCTGGTGGTGGGGGTTAAAACGCCACCTTGGGTTGAATCTGGGGCGGTTCTG
JMSF031F05+           CTGAGAGCGCTGGTGGTGCGGATTGAATCGCCACCTAGGGTTGAACCTGGGACGGTGCTG
JMFF038G04+           CTGAGAGCGCTGGTGGTGCGGATTGAATCGCCACCTAGGGTTGAACCTGGGACGGTGCTG
JMFF015I20+           CTGAGAGCGCTGGTGGTGCGGATTGAATCGCCACCTAGGGTTGAACCTGGGACGGTGCTG
JMFF037L16+           CTGAGAGCGCTGGTGGTGCGGATTGAATCGCCACCTAGGGTTGAACCTGGGACGGTGCTG
JMFF014G14+           CTGAGAGCGCTGGTGGTGCGGATTGAATCGCCACCTAGGGTTGAACCTGGGACGGTGCTG
JMSF038L12+           CTGAGAGCGCTGGTGGTGCGGATTGAATCGCCACCTAGGGTTGAACCTGGGACGGTGCTG
                      ____________________________________________________________
consensus             CTGAGAGCGCTGGTGGTGCGGATTGAATCGCCACCTAGGGTTGAACCTGGGACGGTGCTG
 
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JMFS019B08+           GCCGTGGTGGTGAGACTTCGCGGCCGTATCGACGAGGCGGAAGGAGGAATCCTCGTCGGC
JMFF043I22+           GCCGTGGTGGTGGGACTTGGCGGTGGTGTCCACCAAGCGGAAGGATGAATCCTCGTCGCC
JMSF031F05+           GCCGTGGTGGTGAGACTTCGCGGCCGTATCGACGAGGCGGAAGGAGGAATCCTCGTCGGC
JMFF038G04+           GCCGTGGTGGTGAGACTTCGCGGCCGTATCGACGAGGCGGAAGGAGGAATCCTCGTCGGC
JMFF015I20+           GCCGTGGTGGTGAGACTTCGCGGCCGTATCGACGAGGCGGAAGGAGGAATCCTCGTCGGC
JMFF037L16+           GCCGTGGTGGTGAGACTTCGCGGCCGTATCGACGAGGCGGAAGGAGGAATCCTCGTCGGC
JMFF014G14+           GCCGTGGTGGTGAGACTTCGCGGCCGTATCGACGAGGCGGAAGGAGGAATCCTCGTCGGC
JMSF038L12+           GCCGTGGTGGTGAGACTTCGCGGCCGTATCGACGAGGCGGAAGGAGGAATCCTCGTCGGC
                      ____________________________________________________________
consensus             GCCGTGGTGGTGAGACTTCGCGGCCGTATCGACGAGGCGGAAGGAGGAATCCTCGTCGGC
 
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JMFS019B08+           GGCTAGCGTAGCGAAAGAGTCGTCAGTCGAGAAGTCGAACGCAGAGTCCGCGTGGCCCTG
JMFF043I22+           GGCTAGAGTGGCGAACGAATCGTCACCGGAGAAGTCGAAGGCAGAGTCCGC         
JMSF031F05+           GGCTAGCGTAGCGAAAGAGTCGTCAGTCGAGAAGTCGAACGCAGAGTCCGCGTGGCCCTG
JMFF038G04+           GGCTAGCGTAGCGAAAGAGTCGTCAGTCGAGAAGTCGAACGCAGAGTCCGCGTGGCCCTG
JMFF015I20+           GGCTAGCGTAGCGAAAGAGTCGTCAGTCGAGAAGTCGAACGCAGAGTCCGCGTGGCCCTG
JMFF037L16+           GGCTAGCGTAGCGAAAGAGTCGTCAGTCGAGAAGTCGAACGCAGAGTCCGCGTGGCCCTG
JMFF014G14+           GGCTAGCGTAGCGAAAGAGTCGTCAGTCGAGAAGTCGAACGCAGAGTCCGCGTGGCCCTG
JMSF038L12+           GGCTAGCGTAGCGAAAGAGTCGTCAGTCGAGAAGTCGAACGCAGAGTCCGCGTGGCCCTG
                      ____________________________________________________________
consensus             GGCTAGCGTAGCGAAAGAGTCGTCAGTCGAGAAGTCGAACGCAGAGTCCGCGTGGCCCTG
 
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JMFS019B08+           CTTCGAGTTCGCACCGGGCCGGCCCGGGTTCGACAGAGTCCGAGTCCAATCGGCGATTCT
JMSF031F05+           CTTCGAGTTCGCACCGGGCCGGCCCGGGTTCGACAGAGTCCGAGTCCAATCGGCGATTCT
JMFF038G04+           CTTCGAGTTCGCACCGGGCCGGCCCGGGTTCGACAGAGTCCGAGTCCAATCGGCGATTCT
JMFF015I20+           CTTCGAGTTCGCACCGGGCCGGCCCGGGTTCGACAGAGTCCGAGTCCAATCGGCGATTCT
JMFF037L16+           CTTCGAGTTCGCACCGGGCCGGCCCGGGTTCGACAGAGTCCGAGTCCAATCGGCGATTCT
JMFF014G14+           CTTCGAGTTCGCACCGGGCCGGCCCGGGTTCGACAGAGTCCGAGTCCAATCGGCGATTCT
JMSF038L12+           CTTCGAGTTCGCACCGGGCCGGCCCGGGTTCGACAGAGTCCGAGTCCAATCGGCGATTCT
                      ____________________________________________________________
consensus             CTTCGAGTTCGCACCGGGCCGGCCCGGGTTCGACAGAGTCCGAGTCCAATCGGCGATTCT
 
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JMFS019B08+           CCCAATCCTCTCCGAGCGGGAGAAGGGAGCGAACGGCACATTGGAAGGCTGGTTAGGGAG
JMSF031F05+           CCCAATCCTCTCCGAGCGGGAGAAGGGAGCGAACGGCACATTGGAAGGCTGGTTAGGGAG
JMFF038G04+           CCCAATCCTCTCCGAGCGGGAGAAGGGAGCGAACGGCACATTGGAAGGCTGGTTAGGGAG
JMFF015I20+           CCCAATCCTCTCCGAGCGGGAGAAGGGAGCGAACGGCACATTGGAAGGCTGGTTAGGGAG
JMFF037L16+           CCCAATCCTCTCCGAGCGGGAGAAGGGAGCGAACGGCACATTGGAAGGCTGGTTAGGGAG
JMFF014G14+           CCCAATCCTCTCCGAGCGGGAGAAGGGAGCGAACGGCACATTGGAAGGCTGGTTAGGGAG
JMSF038L12+           CCCAATCCTCTCCGAGCGGGAGAAGGGAGCGAACGGCACATTGGAAGGCTGGTTAGGGAG
                      ____________________________________________________________
consensus             CCCAATCCTCTCCGAGCGGGAGAAGGGAGCGAACGGCACATTGGAAGGCTGGTTAGGGAG
 
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JMFS019B08+           GGAGATCGAGCCGCCGGTGCTCGAATCCGGTGGGCCCCATCCGTCTGGGTTGAACGGTAC
JMSF031F05+           GGAGATCGAGCCGCCGGTGCTCGAATCCGGTGGGCCCCATCCGTCTGGGTTGAACGGTAC
JMFF038G04+           GGAGATCGAGCCGCCGGTGCTCGAATCCGGTGGGCCCCATCCGTCTGGGTTGAACGGTAC
JMFF015I20+           GGAGATCGAGCCGCCGGTGCTCGAATCCGGTGGGCCCCATCCGTCTGGGTTGAACGGTAC
JMFF037L16+           GGAGATCGAGCCGCCGGTGCTCGAATCCGGTGGGCCCCATCCGTCTGGGTTGAACGGTAC
JMFF014G14+           GGAGATCGAGCCGCCGGTGCTCGAATCCGGTGGGCCCCATCCGTCTGGGTTGAACGGTAC
JMSF038L12+           GGAGATCGAGCCGCCGGTGCTCGAATCCGGTGGGCCCCATCCGTCTGGGTTGAACGGTAC
                      ____________________________________________________________
consensus             GGAGATCGAGCCGCCGGTGCTCGAATCCGGTGGGCCCCATCCGTCTGGGTTGAACGGTAC
 
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JMFS019B08+           TGCGCCGATTTCAAAGCCAACCATATTCCGATCAGATTCGAATTGTTCT           
JMSF031F05+           TGCGCCGATTTCAAAGCCAACCATATTCCGATCAGATTCGAATTGTTCTTCCTTTTTTGG
JMFF038G04+           TGCGCCGATTTCAAAGCCAACCATATTCCGATCAGATTCGAATTGTTCTTCCTTTTTTGG
JMFF015I20+           TGCGCCGATTTCAAAGCCAACCATATTCCGATCAGATTCGAATTGTTCTTCCTTTTTTGG
JMFF037L16+           TGCGCCGATTTCAAAGCCAACCATATTCCGATCAGATTCGAATTGTTCTTCCTTTTTTGG
JMFF014G14+           TGCGCCGATTTCAAAGCCAACCATATTCCGATCAGATTCGAATTGTTCTTCCTTTTTTGG
JMSF038L12+           TGCGCCGATTTCAAAGCCAACCATATTCCGATCAGATTCGAATTGTTCTTCCTTTTTTGG
                      ____________________________________________________________
consensus             TGCGCCGATTTCAAAGCCAACCATATTCCGATCAGATTCGAATTGTTCTTCCTTTTTTGG
 
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JMSF031F05+           TGATTGTAGCGCAGAGACCAGAGAGAGT                                
JMFF038G04+           TGATTGTAGCGCAGAGACCAGAGAGAGTGAGGAAGA                        
JMFF015I20+           TGATTGTAGCGCAGAGACCAGAGAGAGTGAGGAAGACGAT                    
JMFF037L16+           TGATTGTAGCGCAGAGACCAGAGAGAGTGAGGAAGACGATGATAAAACCCTA        
JMFF014G14+           TGATTGTAGCGCAGAGACCAGAGAGAGTGAGGAAGACGATGATAAAACCCTA        
JMSF038L12+           TGATTGTAGCGCAGAGACCAGAGAGAGTGAGGAAGACGATGATAAAACCCTAGCTACCTC
                      ____________________________________________________________
consensus             TGATTGTAGCGCAGAGACCAGAGAGAGTGAGGAAGACGATGATAAAACCCTAGCTACCTC