Contig 006632:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF003B08Sequence240006632 (3)
JMSF015N22Sequence499006632 (3)ref|XP_009787496.1|2e-15PREDICTED: light-inducible protein CPRF2-like [Nicotiana sylvestris]789002809 (3)ref|NP_001236299.1|6e-74G/HBF-1 protein [Glycine max] emb|CAA71687.1| G/HBF-1 [Glycine max]
JMSF038C16Sequence640006632 (3)867002809 (3)ref|XP_009610430.1|2e-68PREDICTED: light-inducible protein CPRF2 [Nicotiana tomentosiformis]

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF015N22+ TCTTGAGGATCCATGCAA
                      ____________________________________________________________
consensus TCTTGAGGATCCATGCAA
 
. : . : . : . : . : . :
JMSF015N22+ TTTCCACGCGAGAAAGCTACGGCGGCGCAGGCTAAATAGAGACGACTTTTGAGGAATGTC
                      ____________________________________________________________
consensus TTTCCACGCGAGAAAGCTACGGCGGCGCAGGCTAAATAGAGACGACTTTTGAGGAATGTC
 
. : . : . : . : . : . :
JMSF015N22+ TGATAGTCCTCTGAACCAATGGGAACGTTAGCGGCAGGTCCCGCACCCAACGACGTCGTC
                      ____________________________________________________________
consensus TGATAGTCCTCTGAACCAATGGGAACGTTAGCGGCAGGTCCCGCACCCAACGACGTCGTC
 
. : . : . : . : . : . :
JMSF015N22+ TTCGCGGTTTCCGTCGCCGACTCTGCCCCGGAGCTCTCGTGACCGAAGTTCACATCCCGA
JMSF038C16+ CTCTGCCCCGGAGCTCTCGTGACCGAAGTTCACATCCCGA
                      ____________________________________________________________
consensus TTCGCGGTTTCCGTCGCCGACTCTGCCCCGGAGCTCTCGTGACCGAAGTTCACATCCCGA
 
. : . : . : . : . : . :
JMSF015N22+ TCAGCTCCGAGATTCCGATCCGAAATCTCGACGACGTCGTTCTGTGGCAACCGCTGCCGA
JMSF038C16+ TCAGCTCCGAGATTCCGATCCGAAATCTCGACGACGTCGTTCTGTGGCAACCGCTGCCGA
                      ____________________________________________________________
consensus TCAGCTCCGAGATTCCGATCCGAAATCTCGACGACGTCGTTCTGTGGCAACCGCTGCCGA
 
. : . : . : . : . : . :
JMSF015N22+ CCAGAGGCAGCAGGAGCAGAAGTAGAAGAACAAGAAGCAGGAGGTGAAGAAGACAAAGTG
JMSF003B08+ GAGGCAGCAGGAGCAGAAGTAGAAGAACAAGAAGCAGGAGGTGAAGAAGACAAAGTG
JMSF038C16+ CCAGAGGCAGCAGGAGCAGAAGTAGAAGAACAAGAAGCAGGAGGTGAAGAAGACAAAGTG
                      ____________________________________________________________
consensus CCAGAGGCAGCAGGAGCAGAAGTAGAAGAACAAGAAGCAGGAGGTGAAGAAGACAAAGTG
 
. : . : . : . : . : . :
JMSF015N22+ TGATCAACGGAGGCGGTGGCTTCCTGGAGGAAGCGCTGGAAGGCATACTCGGAGGGGCTA
JMSF003B08+ TGATCAACGGAGGCGGTGGCTTCCTGGAGGAAGCGCTGGAAGGCATACTCGGAGGGGCTA
JMSF038C16+ TGATCAACGGAGGCGGTGGCTTCCTGGAGGAAGCGCTGGAAGGCATACTCGGAGGGGCTA
                      ____________________________________________________________
consensus TGATCAACGGAGGCGGTGGCTTCCTGGAGGAAGCGCTGGAAGGCATACTCGGAGGGGCTA
 
. : . : . : . : . : . :
JMSF015N22+ CGGCTCATCATCATCTTGTCCGGCGGCAGCGGCA--GGCGGCGGCATGAACTTGTCGACA
JMSF003B08+ CGGCTCATCATCATCTTGTCCGGCGGCAGCGGCAGCGGCGGCGGCATGAACTTGTCGACA
JMSF038C16+ CGGCTCATCATCATCTTGTCCGGCGGCAGCGGCAGCGGCGGCGGCATGAACTTGTCGACA
                      ____________________________________________________________
consensus CGGCTCATCATCATCTTGTCCGGCGGCAGCGGCAGCGGCGGCGGCATGAACTTGTCGACA
 
. : . : . : . : . : . :
JMSF015N22+ TTCTCGCCCACTGTGAGAACCTTATCCATTTCCAATTTTCCCTACTACGCAGAACTGAAG
JMSF003B08+ TTCTCGCCCACTGTGAGAACCTTATCCATTTCCAATTTTCCCTACTACGCAGAACTGAAG
JMSF038C16+ TTCTCGCCCACTGTGAGAACCTTATCCATTTCCAATTTTCCCTACTACGCAGAACTGAAG
                      ____________________________________________________________
consensus TTCTCGCCCACTGTGAGAACCTTATCCATTTCCAATTTTCCCTACTACGCAGAACTGAAG
 
. : . : . : . : . : . :
JMSF015N22+ AT
JMSF003B08+ AT
JMSF038C16+ ATGATTTTTCCGAATCCCAGGATTTGTCAGCTTATATCTGCTCCGTCCGGTCCTTTGACA
                      ____________________________________________________________
consensus ATGATTTTTCCGAATCCCAGGATTTGTCAGCTTATATCTGCTCCGTCCGGTCCTTTGACA
 
. : . : . : . : . : . :
JMSF038C16+ GTGACGCACAATGGCAATAGTGGATTCACCACCCTAATCTCCCATAAATATTTCAACAGC
                      ____________________________________________________________
consensus GTGACGCACAATGGCAATAGTGGATTCACCACCCTAATCTCCCATAAATATTTCAACAGC
 
. : . : . : . : . : . :
JMSF038C16+ TCTACTCCTAACTCCTAAGTCCTAACACAGTTGATAGCAGCGACAAAGAGCCCTAGTTAG
                      ____________________________________________________________
consensus TCTACTCCTAACTCCTAAGTCCTAACACAGTTGATAGCAGCGACAAAGAGCCCTAGTTAG
 
. : . : . : . : . : . :
JMSF038C16+ TCGGTTGATGATGGGATTAATTTAATAAAATTTCAATTCCCATGATTGTCGGAAGAAATT
                      ____________________________________________________________
consensus TCGGTTGATGATGGGATTAATTTAATAAAATTTCAATTCCCATGATTGTCGGAAGAAATT
 
. : . : . : . : . : . :
JMSF038C16+ GAAGAAAGAATCAATGCTCCAAATCATCCATTTGGACATTTGGAATGAAATGCTAACATC
                      ____________________________________________________________
consensus GAAGAAAGAATCAATGCTCCAAATCATCCATTTGGACATTTGGAATGAAATGCTAACATC