Contig 006614:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN011F03Sequence618006614 (4)ref|XP_009631155.1|1e-72PREDICTED: 60S ribosomal protein L18a-like protein [Nicotiana tomentosiformis]
JMFN037B17Sequence607006614 (4)ref|XP_009631155.1|1e-72PREDICTED: 60S ribosomal protein L18a-like protein [Nicotiana tomentosiformis]
JMSF036D20Sequence688006614 (4)ref|XP_009631155.1|3e-72PREDICTED: 60S ribosomal protein L18a-like protein [Nicotiana tomentosiformis]738006614 (4)ref|XP_009631155.1|5e-72PREDICTED: 60S ribosomal protein L18a-like protein [Nicotiana tomentosiformis]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF036D20- AGCATTAACATTACCAAT
                      ____________________________________________________________
consensus AGCATTAACATTACCAAT
 
. : . : . : . : . : . :
rJMSF036D20- CCAGATCCAATTAAGAGCAGCTATACAGATAAAAGAAGATGAATACCGATTCAAAACTAT
JMSF036D20+ AAGAAGATGAATACCGATTCAAAACTAT
                      ____________________________________________________________
consensus CCAGATCCAATTAAGAGCAGCTATACAGATAAAAGAAGATGAATACCGATTCAAAACTAT
 
. : . : . : . : . : . :
JMFN011F03+ TGAGATTTCGCTCTCCGTCTTCATGGTAAGGGAATGTATAAAAC
rJMSF036D20- TAGATTTCATGCCCTCTGAGATTTCGCTCTCCGTCTTCATGGTAAGGGAATGTATAAAAC
JMFN037B17+ CATGGTAAGGGAATGTATAAAAC
JMSF036D20+ TAGATTTCATGCCNTCTGAGATTTCGCTCTCCGTCTTCATGGTAAGGGAATGTATAAAAC
                      ____________________________________________________________
consensus TAGATTTCATGCCCTCTGAGATTTCGCTCTCCGTCTTCATGGTAAGGGAATGTATAAAAC
 
. : . : . : . : . : . :
JMFN011F03+ TTAAGCAGCCCGGGCGCCTTTCACCAGGAATGAGTTGCCTTTGTCACACCGAGGGTAACA
rJMSF036D20- TTAAGCAGCCCGGGCGCCTTTCACCAGGAATGAGTTGCCTTTGTCACACCGAGGGTAACA
JMFN037B17+ TTAAGCAGCCCGGGCGCCTTTCACCAGGAATGAGTTGCCTTTGTCACACCGAGGGTAACA
JMSF036D20+ TTAAGCAGCCCGGGCGCCTTTCACCAGGAATGAGTTGCCTTTGTCACACCGAGGGTAACA
                      ____________________________________________________________
consensus TTAAGCAGCCCGGGCGCCTTTCACCAGGAATGAGTTGCCTTTGTCACACCGAGGGTAACA
 
. : . : . : . : . : . :
JMFN011F03+ GCTACCATTGCGAGGATAGCAGCTAATGTGCATGCAATAAGTCCAGGCTTCTCTCTGTAG
rJMSF036D20- GCTACCATTGCGAGGATAGCAGCTAATGTGCATGCAATAAGTCCAGGCTTCTCTCTGTAG
JMFN037B17+ GCTACCATTGCGAGGATAGCAGCTAATGTGCATGCAATAAGTCCAGGCTTCTCTCTGTAG
JMSF036D20+ GCTACCATTGCGAGGATAGCAGCTAATGTGCATGCAATAAGTCCAGGCTTCTCTCTGTAG
                      ____________________________________________________________
consensus GCTACCATTGCGAGGATAGCAGCTAATGTGCATGCAATAAGTCCAGGCTTCTCTCTGTAG
 
. : . : . : . : . : . :
JMFN011F03+ TCCATTCGGATACACAAAAGCAGAAAAGCTCCGATATACCAGGGGATGGCACCAAGAAAG
rJMSF036D20- TCCATTCGGATACACAAAAGCAGAAAAGCTCCGATATACCAGGGGATGGCACCAAGAAAG
JMFN037B17+ TCCATTCGGATACACAAAAGCAGAAAAGCTCCGATATACCAGGGGATGGCACCAAGAAAG
JMSF036D20+ TCCATTCGGATACACAAAAGCAGAAAAGCTCCGATATACCAGGGGATGGCACCAAGAAAG
                      ____________________________________________________________
consensus TCCATTCGGATACACAAAAGCAGAAAAGCTCCGATATACCAGGGGATGGCACCAAGAAAG
 
. : . : . : . : . : . :
JMFN011F03+ AAACCAACAATGAATAAGAACCATCCCAGCCCCATACCACAGCAGGGTAGCCGGTGCTCC
rJMSF036D20- AAACCAACAATGAATAAGAACCATCCCAGCCCCATACCACAGCAGGGTAGCCGGTGCTCC
JMFN037B17+ AAACCAACAATGAATAAGAACCATCCCAGCCCCATACCACAGCAGGGTAGCCGGTGCTCC
JMSF036D20+ AAACCAACAATGAATAAGAACCATCCCAGCCCCATACCACAGCAGGGTAGCCGGTGCTCC
                      ____________________________________________________________
consensus AAACCAACAATGAATAAGAACCATCCCAGCCCCATACCACAGCAGGGTAGCCGGTGCTCC
 
. : . : . : . : . : . :
JMFN011F03+ CTTAAGGGTCTACCTTCAACAACAGCATAACCTTGAACGGTTTGATAACCATGGGGATAG
rJMSF036D20- CTTAAGGGTCTACCTTCAACAACAGCATAACCTTGAACGGTTTGATAACCATGGGGATAG
JMFN037B17+ CTTAAGGGTCTACCTTCAACAACAGCATAACCTTGAACGGTTTGATAACCATGGGGATAG
JMSF036D20+ CTTAAGGGTCTACCTTCAACAACAGCATAACCTTGAACGGTTTGATAACCATGGGGATAG
                      ____________________________________________________________
consensus CTTAAGGGTCTACCTTCAACAACAGCATAACCTTGAACGGTTTGATAACCATGGGGATAG
 
. : . : . : . : . : . :
JMFN011F03+ TAATGAGGAGGGGCGCCGGAGACGCCGGCGGGAGGAATAGGTTGGGGGAAACCGATGACC
rJMSF036D20- TAATGAGGAGGGGCGCCGGAGACGCCGGCGGGAGGAATAGGTTGGGGGAAACCGATGACC
JMFN037B17+ TAATGAGGAGGGGCGCCGGAGACGCCGGCGGGAGGAATAGGTTGGGGGAAACCGATGACC
JMSF036D20+ TAATGAGGAGGGGCGCCGGAGACGCCGGCGGGAGGAATAGGTTGGGGGAAACCGATGACC
                      ____________________________________________________________
consensus TAATGAGGAGGGGCGCCGGAGACGCCGGCGGGAGGAATAGGTTGGGGGAAACCGATGACC
 
. : . : . : . : . : . :
JMFN011F03+ GGCGCAGACTGCTGAGGCGGCGGAGCTTGATAATTAGCCACTCCTTGAAACGTGCCGTAG
rJMSF036D20- GGCGCAGACTGCTGAGGCGGCGGAGCTTGATAATTAGCCACTCCTTGAAACGTGCCGTAG
JMFN037B17+ GGCGCAGACTGCTGAGGCGGCGGAGCTTGATAATTAGCCACTCCTTGAAACGTGCCGTAG
JMSF036D20+ GGCGCAGACTGCTGAGGCGGCGGAGCTTGATAATTAGCCACTCCTTGAAACGTGCCGTAG
                      ____________________________________________________________
consensus GGCGCAGACTGCTGAGGCGGCGGAGCTTGATAATTAGCCACTCCTTGAAACGTGCCGTAG
 
. : . : . : . : . : . :
JMFN011F03+ TAATAGTTCGGAGGCGTCACCAGCGGCTCTTGCGCGGTGCCGGAGGCGGCAGCGCCTCTG
rJMSF036D20- TAATAGTTCGGAGGCGTCACCAGCGGCTCTTGCGCGGTGCCGGAGGCGGCAGCGCCTCTG
JMFN037B17+ TAATAGTTCGGAGGCGTCACCAGCGGCTCTTGCGCGGTGCCGGAGGCGGCAGCGCCTCTG
JMSF036D20+ TAATAGTTCGGAGGCGTCACCAGCGGCTCTTGCGCGGTGCCGGAGGCGGCAGCGCCTCTG
                      ____________________________________________________________
consensus TAATAGTTCGGAGGCGTCACCAGCGGCTCTTGCGCGGTGCCGGAGGCGGCAGCGCCTCTG
 
. : . : . : . : . : . :
JMFN011F03+ CTCTTCCCTCCTTCTTCGCTCATGGCTCCGGTATCGATCGATCGACCGATCAATCAACGG
rJMSF036D20- CTCTTCCCTCCTTCTTCGCTCATGGCTCCGGTATCGATCGATCGACCGATCAATCAACGG
JMFN037B17+ CTCTTCCCTCCTTCTTCGCTCATGGCTCCGGTATCGATCGATCGACCGATCAATCAACGG
JMSF036D20+ CTCTTCCCTCCTTCTTCGCTCATGGCTCCGGTATCGATCGATCGACCGATCAATCAACGG
                      ____________________________________________________________
consensus CTCTTCCCTCCTTCTTCGCTCATGGCTCCGGTATCGATCGATCGACCGATCAATCAACGG
 
. : . : . : . : . : . :
JMFN011F03+ CGGGGATCAGGTATCGGGGTGGGATGTCCTATTG
rJMSF036D20- CGGGGATCAGGTATCGGGGTGGGATGTCCTATTGATCTCAGCTGCGAAGGTTGAATTCTC
JMFN037B17+ CGGGGATCAGGTATCGGGGTGGGATGTCCTATTGATCTCAGCTG
JMSF036D20+ CGGGGATCAGGTATCGGGGTGGGATGTCCTATTGATCTCAGCTGCGAAGGTTGAATTCTC
                      ____________________________________________________________
consensus CGGGGATCAGGTATCGGGGTGGGATGTCCTATTGATCTCAGCTGCGAAGGTTGAATTCTC