Contig 006613:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS128A06Sequence431006613 (4)
JMSF014C14Sequence354006613 (4)790001316 (4)ref|XP_006358871.1|9e-136PREDICTED: scarecrow-like protein 28-like [Solanum tuberosum]
JMSF036B18Sequence402006613 (4)709001316 (4)ref|XP_004245645.1|1e-109PREDICTED: scarecrow-like protein 28 [Solanum lycopersicum]
JMSF040P15Sequence591006613 (4)746001316 (4)ref|XP_006358871.1|4e-133PREDICTED: scarecrow-like protein 28-like [Solanum tuberosum]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF040P15+                   AGTGTGTGCCAAAATTAATTTCCCAAGAAATTGACAAAAACTGGAATCCGAT
                      ____________________________________________________________
consensus                     AGTGTGTGCCAAAATTAATTTCCCAAGAAATTGACAAAAACTGGAATCCGAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF040P15+           GCCAAAAATATACGCTTTNTTNTTTTCTCTCTGNGNGTGTGTCCTATATGTTTATGNGCA
                      ____________________________________________________________
consensus             GCCAAAAATATACGCTTTNTTNTTTTCTCTCTGNGNGTGTGTCCTATATGTTTATGNGCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS128A06+                                        AATCAAAGAATCTAAGAATTGGAAAGAATGT
JMSF040P15+           ACAAAGAATNGGGTCAACNGNACNAGCCAAATCAAAGAATCAAAGAATTGGAAAGAATGT
                      ____________________________________________________________
consensus             ACAAAGAATNGGGTCAACNGNACNAGCCAAATCAAAGAATCTAAGAATTGGAAAGAATGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS128A06+           TGGAACTAAAACTAATAACACCCCCTATTGTAGACACATTCAATCAAGACCTACCCAAAA
JMSF014C14+                                                                    AAA
JMSF040P15+           TGGAACTNAAACTAATAACNCCCCCTNTTGTAAACACATTCAATCAAGNCCTNCCC-AAA
JMSF036B18+                                                                    AAA
                      ____________________________________________________________
consensus             TGGAACTAAAACTAATAACACCCCCTATTGTAGACACATTCAATCAAGACCTACCCAAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS128A06+           AAAAAAACACAAAAAGATCATCGGATTCCTGAACTTTCAGAGAGAACTCATGCTAAGAAA
JMSF014C14+           AAAAAAACACAAAAAGATCATCGGATTCCTGAACTTTCAGAGAGAACTCATGCTAAGAAA
JMSF040P15+           AAAAAAACACAAAAAGATCATCGGATTCCTGAACTTTCAGAGAGAACTCATGCTAAGAAA
JMSF036B18+           AAAAAAACACAAAAAGATCATCGGATTCCTGAACTTTCAGAGAGAACTCATGCTAAGAAA
                      ____________________________________________________________
consensus             AAAAAAACACAAAAAGATCATCGGATTCCTGAACTTTCAGAGAGAACTCATGCTAAGAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS128A06+           AATTGTTTTTTCAAGAGATAAGAACTCACATACATTCTTGATCCCAAAATGCAGCCAAAG
JMSF014C14+           AATTGTTTTTTCAAGAGATAAGAACTCACATACATTCTTGATCCCAAAATGCAGCCAAAG
JMSF040P15+           AATTGTTTTTTCAAGAGATAAGAACTCACATACATTCTTGATCCCAAAATGCAGCCAAAG
JMSF036B18+           AATTGTTTTTTCAAGAGATAAGAACTCACCTACATTCTTGATCCCAAAATGCAGCCAAAG
                      ____________________________________________________________
consensus             AATTGTTTTTTCAAGAGATAAGAACTCACATACATTCTTGATCCCAAAATGCAGCCAAAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS128A06+           GAATGAATTCTTGAAATACCCAGAGCAAGTAAACAAGCAGTCCATGTGATGAAAAAAAGT
JMSF014C14+           GAATGAATTCTTGAAATACCCAGAGCAAGTAAACAAGCAGTCCATGTGATGAAAAAAAGT
JMSF040P15+           GAATGAATTCTTGAAATACCCAGAGCAAGTAAACAAGCAGTCCATGTGATGAAAAAAAGT
JMSF036B18+           GAATGAATTCTTGAAATACCCAGAGCAAGTAAACAAGCAGTCCATGTGATGAAAAAAAGT
                      ____________________________________________________________
consensus             GAATGAATTCTTGAAATACCCAGAGCAAGTAAACAAGCAGTCCATGTGATGAAAAAAAGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS128A06+           ATGCTCTCTCTCTCTCTCTCTCTAAACCCCCAAAACCCCCCAAAAAACCCAGGCTTTTAC
JMSF014C14+           ATGCTCTCTCTCTCTCTCTCTCTAAACCCCCAAAACCCCCCAAAAAACCCAGGCTTTTAC
JMSF040P15+           ATGCTCTCTCTCTCTCTCTCTCTAAACCCCCAAAACCCCCCAAAAAACCCAGGCTTTTAC
JMSF036B18+           ATGCTCTCTCTCTCTCTCTCTCTAAACCCCCAAAACCCCCCAAAAAACCCAGGCTTTTAC
                      ____________________________________________________________
consensus             ATGCTCTCTCTCTCTCTCTCTCTAAACCCCCAAAACCCCCCAAAAAACCCAGGCTTTTAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS128A06+           TGTAAACCCCTTCAAGCACTCATGAAATCCATGAAGACGATCACCATGACCAAGGAAGAA
JMSF014C14+           TGTAAACCCCTTCAAGCACTCATGAAATCCATGAAGACGATCACCATGACCAAGGAAGAA
JMSF040P15+           TGTAAACCCCTTCAAGCACTCATGAAATCCATGAAGACGATCACCATGACCAAGGAAGAA
JMSF036B18+           TGTAAACCCCTTCAAGCACTCATGAAATCCATGAAGACGATCACCATGACCAAGGAAGAA
                      ____________________________________________________________
consensus             TGTAAACCCCTTCAAGCACTCATGAAATCCATGAAGACGATCACCATGACCAAGGAAGAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS128A06+           GAAGAAGCAAATAACTGAAAGAAGTGACTTCCTAAAGCCC                    
JMSF014C14+           GAAGAAGCAAATAACTGAAAGAAGTGACTTCCTAAAGCCC                    
JMSF040P15+           GAAGAAGCAAATAACTGAAAGAAGTGACTTCCTAAAGCCCCACTACCCAAAAAAGCAATC
JMSF036B18+           GAAGAAGCAAATAACTGAAAGAAGTGACTTCCTAAAGCCCCACTACCCAAAAAAGCAATC
                      ____________________________________________________________
consensus             GAAGAAGCAAATAACTGAAAGAAGTGACTTCCTAAAGCCCCACTACCCAAAAAAGCAATC