Contig 006598:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF004D10Sequence594006598 (3)ref|XP_002313120.1|6e-61Methylcrotonyl-CoA carboxylase beta chain family protein [Populus trichocarpa] 741006778 (3)ref|XP_010107929.1|2e-37Methylcrotonoyl-CoA carboxylase beta chain [Morus notabilis] gb|EXC17329.1| Meth
JMFS053F01Sequence609006598 (3)ref|XP_002313120.1|1e-78Methylcrotonyl-CoA carboxylase beta chain family protein [Populus trichocarpa]
JMSF033O15Sequence658006598 (3)ref|XP_002313120.1|9e-82Methylcrotonyl-CoA carboxylase beta chain family protein [Populus trichocarpa] 724006778 (3)ref|XP_010107929.1|9e-57Methylcrotonoyl-CoA carboxylase beta chain [Morus notabilis] gb|EXC17329.1| Meth

Alignment

This contig is upended


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JMFS053F01+                          GACAGGGTAGTNTGCATTGTGCAGCAATTTCTTGAGCTCTCAGAT
JMFF004D10+             TCAACAAGATATAGACAGGGTAGTTTGCATTGTGCAGCAATTTCTTGAGCTCTCAGAT
JMSF033O15+             TCAACAAGATATAGACAGGGTAGTTTGCATTGTGCAGCAATTTCTTGAGCTCTCAGAT
                      ____________________________________________________________
consensus               TCAACAAGATATAGACAGGGTAGTTTGCATTGTGCAGCAATTTCTTGAGCTCTCAGAT
 
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JMFS053F01+           GTTTCTTGACTGTGATGGGGAAATAAGTTCCACCTTTGACAGTAGGGTCATTTGCCACGA
JMFF004D10+           GTTTCTTGACTGTGATGGGGAAATAAGTTCCACCTTTGACAGTAGGGTCATTTGCCACGA
JMSF033O15+           GTTTCTTGACTGTGATGGGGAAATAAGTTCCACCTTTGACAGTAGGGTCATTTGCCACGA
                      ____________________________________________________________
consensus             GTTTCTTGACTGTGATGGGGAAATAAGTTCCACCTTTGACAGTAGGGTCATTTGCCACGA
 
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JMFS053F01+           ACATGCAAAGTCTTCCATGCACTGGTCCTATTCCAGTAATTATTCCACCAGAAGGTAATG
JMFF004D10+           ACATGCAAAGTCTTCCATGCACTGGTCCTATTCCAGTAATTATTCCACCAGAAGGTAATG
JMSF033O15+           ACATGCAAAGTCTTCCATGCACTGGTCCTATTCCAGTAATTATTCCACCAGAAGGTAATG
                      ____________________________________________________________
consensus             ACATGCAAAGTCTTCCATGCACTGGTCCTATTCCAGTAATTATTCCACCAGAAGGTAATG
 
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JMFS053F01+           GATCCTCATATAATTCATGGCCTGCAAGTGGAGAAAGCTCTAGGAACGAAGAACCAGGGT
JMFF004D10+           GATCCTCATATAATTCATGGCCTGCAAGTGGAGAAAGCTCTAGGAACGAAGAACCAGGGT
JMSF033O15+           GATCCTCATATAATTCATGGCCTGCAAGTGGAGAAAGCTCTAGGAACGAAGAACCAGGGT
                      ____________________________________________________________
consensus             GATCCTCATATAATTCATGGCCTGCAAGTGGAGAAAGCTCTAGGAACGAAGAACCAGGGT
 
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JMFS053F01+           CGAGCAGACGATCGATTCTCTCTCTCGGAAGAAGCTTATTCCTGCTTCTGTTTCTCTCAA
JMFF004D10+           CGAGCAGACGATCGATTCTCTCTCTCGGAAGAAGCTTATTCCTGCTTCTGTTT-TCTCAA
JMSF033O15+           CGAGCAGACGATCGATTCTCTCTCTCGGAAGAAGCTTATTCCTGCTTCTGTTTCTCTCAA
                      ____________________________________________________________
consensus             CGAGCAGACGATCGATTCTCTCTCTCGGAAGAAGCTTATTCCTGCTTCTGTTTCTCTCAA
 
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JMFS053F01+           CGGCCGCCGGTCCTCCTCCTTCGGTCACCTTCCGGATATGAGAGTGAAGCTGGGAGACGA
JMFF004D10+           CGGCCGCCGGTCCTCCTCCTTCGGTCACCTTCCGGATATGAGAGTGAAGCTGGGAGACGA
JMSF033O15+           CGGCCGCCGGTCCTCCTCCTTCGGTCACCTTCCGGATATGAGAGTGAAGCTGGGAGACGA
                      ____________________________________________________________
consensus             CGGCCGCCGGTCCTCCTCCTTCGGTCACCTTCCGGATATGAGAGTGAAGCTGGGAGACGA
 
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JMFS053F01+           GATCGTCCATGGCCTTGGAATTGCTGGTAAATACATCGGAGCTCCGGTCCAGCGTGTCGG
JMFF004D10+           GATCGTCCATGGCCTTGGAATTGCTGGTAAATACATCGGAGCTCCGGTCCAGCGTGTCGG
JMSF033O15+           GATCGTCCATGGCCTTGGAATTGCTGGTAAATACATCGGAGCTCCGGTCCAGCGTGTCGG
                      ____________________________________________________________
consensus             GATCGTCCATGGCCTTGGAATTGCTGGTAAATACATCGGAGCTCCGGTCCAGCGTGTCGG
 
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JMFS053F01+           GGAGTACTCCTACGGAGAAAGTTCGGGCGGTGGGAATGGTGATCGGAAGGGATTCCCGCC
JMFF004D10+           GGAGTACTCCTACGGAGAAAGTTCGGGCGGTGGGAATGGTGATCTGAAGGGATTCCCGCC
JMSF033O15+           GGAGTACTCCTACGGAGAAAGTTCGGGCGGTGGGAATGGTGATCGGAAGGGATTCCCGCC
                      ____________________________________________________________
consensus             GGAGTACTCCTACGGAGAAAGTTCGGGCGGTGGGAATGGTGATCGGAAGGGATTCCCGCC
 
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JMFS053F01+           ATGGAAACCAGTATCGTGAAGCTGACGGCGATGCTCTCCGAGCTAATATTCCGAGCATTT
JMFF004D10+           ATGGAAACCAGTATCGTGAAGCTGACGGCGATGCTCTCCGAGCTAATATTCCGAGCATTT
JMSF033O15+           ATGGAAACCAGTATCGTGAAGCTGACGGCGATGCTCTCCGAGCTAATATTCCGAGCATTT
                      ____________________________________________________________
consensus             ATGGAAACCAGTATCGTGAAGCTGACGGCGATGCTCTCCGAGCTAATATTCCGAGCATTT
 
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JMFS053F01+           TCGCTAAATTCGTATCCTCCTGTCCTCTTAACGTCTCCCCCTTCTTCCCAAATCTACACT
JMFF004D10+           TCGCTAAATTCGTATCCTCCTGTCCTCTTAACGTCTCCCCCTTCTTCCCAAATCTAC   
JMSF033O15+           TCGCTAAATTCGTATCCTCCTGTCCTCTTAACGTCTCCCCCTTCTTCCCAAATCTACACT
                      ____________________________________________________________
consensus             TCGCTAAATTCGTATCCTCCTGTCCTCTTAACGTCTCCCCCTTCTTCCCAAATCTACACT
 
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JMFS053F01+           CCTTTCGGACTGATGTGAGTGTAA                                    
JMSF033O15+           CCTTTCGGACTGATGTGAGTGTAATTTTAATTTTTCTCTATCGATACCTCGATCAAATCC
                      ____________________________________________________________
consensus             CCTTTCGGACTGATGTGAGTGTAATTTTAATTTTTCTCTATCGATACCTCGATCAAATCC