Contig 006580:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF020I15Sequence527006580 (3)gb|ACJ84523.1|2e-66unknown [Medicago truncatula]722012503 (4)ref|XP_009770220.1|1e-126PREDICTED: mitogen-activated protein kinase homolog NTF4 [Nicotiana sylvestris]
JMSF007E18Sequence484006580 (3)gb|ACJ84523.1|9e-61unknown [Medicago truncatula]785012503 (4)ref|XP_009770220.1|8e-128PREDICTED: mitogen-activated protein kinase homolog NTF4 [Nicotiana sylvestris]
JMSF031G01Sequence670006580 (3)gb|ACJ84523.1|2e-90unknown [Medicago truncatula]764012503 (4)ref|XP_009770220.1|2e-142PREDICTED: mitogen-activated protein kinase homolog NTF4 [Nicotiana sylvestris]

Alignment

This contig is upended


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JMSF031G01+                                                             AATACNGACA
                      ____________________________________________________________
consensus                                                               AATACNGACA
 
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JMSF031G01+           GTGCTCCTNTGATAATGACTGATAGAGCGAATAATTTGATGAAGATCAGTGTCCATAAGC
                      ____________________________________________________________
consensus             GTGCTCCTNTGATAATGACTGATAGAGCGAATAATTTGATGAAGATCAGTGTCCATAAGC
 
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JMSF031G01+           TCATATGCAATATAAACGTCATTGAATGACGCTCTCTGAGGAGGTGGTATTATATCTCTA
                      ____________________________________________________________
consensus             TCATATGCAATATAAACGTCATTGAATGACGCTCTCTGAGGAGGTGGTATTATATCTCTA
 
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JMSF007E18+                              GATCCATGTGGCGAAGCAACTTGATCTCACGCAGAGTCCTC
JMFF020I15+               CAACAATATTTTCGTGATCCATGTGGCGAAGCAACTTGATCTCACGCAGAGTCCTC
JMSF031G01+           ATTGCAACAATATTTTCGTGATCCATGTGGCGAAGCAACTTGATCTCACGCAGAGTCCTC
                      ____________________________________________________________
consensus             ATTGCAACAATATTTTCGTGATCCATGTGGCGAAGCAACTTGATCTCACGCAGAGTCCTC
 
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JMSF007E18+           TNGGCGTCGATTTTGTTATCAAAAGCATTCGCTATTTTCTTNATCGTTACGTGCTCATTC
JMFF020I15+           TTGGCGTCGATTTTGTTATCAAAAGCATTCGCTATTTTCTTTATCGCTACGTGCTCATTC
JMSF031G01+           TTGGCGTCGATTTTGTTATCAAAAGCATTCGCTATTTTCTTTATCGCTACGTGCTCATTC
                      ____________________________________________________________
consensus             TTGGCGTCGATTTTGTTATCAAAAGCATTCGCTATTTTCTTTATCGCTACGTGCTCATTC
 
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JMSF007E18+           GTTTCCGAATTCAAAGCAGAACAGACGATTCCATATGCGCCTTTGCCGATAGGCATGATG
JMFF020I15+           GTTTCCGAATTCAAAGCAGAACAGACGATTCCATATGCGCCTTTGCCGATAGGCATGATG
JMSF031G01+           GTTTCCGAATTCAAAGCAGAACAGACGATTCCATATGCGCCTTTGCCGATAGGCATGATG
                      ____________________________________________________________
consensus             GTTTCCGAATTCAAAGCAGAACAGACGATTCCATATGCGCCTTTGCCGATAGGCATGATG
 
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JMSF007E18+           GGAGGCTTGTATTTGGCTGTGACCTCAAAGACGTTGCCGAAGATGTTGTATTGGATGAAT
JMFF020I15+           GGAGGCTTGTATTTGGCTGTGACCTCAAAGACGTTGCCGAAGATGTTGTATTGGATGAAT
JMSF031G01+           GGAGGCTTGTATTTGGCTGTGACCTCAAAGACGTTGCCGAAGATGTTGTATTGGATGAAT
                      ____________________________________________________________
consensus             GGAGGCTTGTATTTGGCTGTGACCTCAAAGACGTTGCCGAAGATGTTGTATTGGATGAAT
 
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JMSF007E18+           CTGCCGCCGTGACTGAGTGTTGCCGGAATGTTGTCGATCCCGGGCACCGGAGGCTGAGGT
JMFF020I15+           CTGCCGCCGTGACTGAGTGTTGCCGGAATGTTGTCGATCCC                   
JMSF031G01+           CTGCCGCCGTGACTGAGTGTTGCCGGAATGTTGTCGATCCCGGGCACCGGAGGCTGAGGT
                      ____________________________________________________________
consensus             CTGCCGCCGTGACTGAGTGTTGCCGGAATGTTGTCGATCCCGGGCACCGGAGGCTGAGGT
 
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JMSF007E18+           GGCGCAGCCTCCGACATCACCGTGTCCGCCGGCTGAGCCGAACCACCGTCCATTTTCCTC
JMSF031G01+           GGCGCAGCCTCCGACATCACCGTGTCCGCCGGCTGAGCCGAACCACCGTCCATTTTCCTC
                      ____________________________________________________________
consensus             GGCGCAGCCTCCGACATCACCGTGTCCGCCGGCTGAGCCGAACCACCGTCCATTTTCCTC
 
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JMSF007E18+           CGAAACAAATCACAATTGGTGATAATTTGATTGTTGGAAACAGCAATAGTGATTACAGGA
JMSF031G01+           CGAAACAAATCACAATTGGTGATAATTTGATTGTTGGAAACAGCAATAGTGATTACAGGA
                      ____________________________________________________________
consensus             CGAAACAAATCACAATTGGTGATAATTTGATTGTTGGAAACAGCAATAGTGATTACAGGA
 
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JMSF007E18+           AATATTATCTTATGAACAAACCCTAGATTGAATTTAGTTTCGTTTAAGACTACAATTATT
JMSF031G01+           AATATTATCTTATGAACAAACCCTAGATTGAATTTAGTTTCGTTTAAGACTACAATTATT
                      ____________________________________________________________
consensus             AATATTATCTTATGAACAAACCCTAGATTGAATTTAGTTTCGTTTAAGACTACAATTATT
 
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JMSF007E18+           GAGCAGTTTATAAGGTTTGTCCC                                     
JMSF031G01+           GAGCAGTTTATAAGGTTTGTCCCCTAGTCGGAGATGAAGGGATCTCTCAAATCTCAATTC
                      ____________________________________________________________
consensus             GAGCAGTTTATAAGGTTTGTCCCCTAGTCGGAGATGAAGGGATCTCTCAAATCTCAATTC