Contig 006574:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF030G19Sequence622006574 (2)ref|NP_001274854.1|3e-46external alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial [Solan710010006 (2)ref|XP_009761586.1|3e-117PREDICTED: external alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochond
JMSF036H10Sequence646006574 (2)sp|M1BYJ7.1|ENDB1_SOLTU6e-93RecName: Full=External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitoch747010006 (2)ref|XP_009761586.1|4e-104PREDICTED: external alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochond

Alignment

This contig is upended


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JMSF036H10+                                                       CTACTTCCTTTAGAAA
                      ____________________________________________________________
consensus                                                         CTACTTCCTTTAGAAA
 
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JMSF036H10+           GTGGCAATACTCCAAGACACCGGGGGTGTTAAAAGTGTTCACTCTTGCTCCAACTGCTAC
                      ____________________________________________________________
consensus             GTGGCAATACTCCAAGACACCGGGGGTGTTAAAAGTGTTCACTCTTGCTCCAACTGCTAC
 
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JMSF036H10+           AATCAGATAGTCATAATCTAGTGAGAAATCATTATTCCCGACTAAATTTTCATCAATATT
                      ____________________________________________________________
consensus             AATCAGATAGTCATAATCTAGTGAGAAATCATTATTCCCGACTAAATTTTCATCAATATT
 
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JMSF036H10+           AGAACGACAGTGTAGTTTCTTTTCCTTTGCATCAATCTTCAAGCATTCTGCTTCCCAAAA
                      ____________________________________________________________
consensus             AGAACGACAGTGTAGTTTCTTTTCCTTTGCATCAATCTTCAAGCATTCTGCTTCCCAAAA
 
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JMSF036H10+           ATGAATTTTTCCATTTCCCTTCTTTAATATGTTCCTTATAGGCTCAACTATGCTTCGTGC
JMSF030G19+                                                 TAGGCTCAACTATGCTTCGTGC
                      ____________________________________________________________
consensus             ATGAATTTTTCCATTTCCCTTCTTTAATATGTTCCTTATAGGCTCAACTATGCTTCGTGC
 
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JMSF036H10+           CTCGACTGTTCCACATGTCACACTAGGTAACAATGGAGTAAATGCAAAATAATTTCGCGG
JMSF030G19+           CTCGACTGTTCCACATGTCACACTAGGTAACAATGGAGTAAATGCAAAATAATTTCGCGG
                      ____________________________________________________________
consensus             CTCGACTGTTCCACATGTCACACTAGGTAACAATGGAGTAAATGCAAAATAATTTCGCGG
 
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JMSF036H10+           GGAGACCACTTGAACATCATAGGATGAAACATCCAAATCTTGTAGGAAACTAATGCTAGC
JMSF030G19+           GGAGACCACTTGAACATCATAGGATGAAACATCCAAATCTTGTAGGAAACTAATGCTAGC
                      ____________________________________________________________
consensus             GGAGACCACTTGAACATCATAGGATGAAACATCCAAATCTTGTAGGAAACTAATGCTAGC
 
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JMSF036H10+           CCATCCTGTTCCAAGCACCACCACTCTTTTTCTCTTCGGTTCTGGCTGACTTTGTTCCAC
JMSF030G19+           CCATCCTGTTCCAAGCACCACCACTCTTTTTCTCTTCGGTTCTGGCTGACTTTGTTCCAC
                      ____________________________________________________________
consensus             CCATCCTGTTCCAAGCACCACCACTCTTTTTCTCTTCGGTTCTGGCTGACTTTGTTCCAC
 
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JMSF036H10+           AATTTTCGTTTCGTTGTTTGAATGGGATTCTGCATATGCAATCAGACCTCCACTACTGAC
JMSF030G19+           AATTTTCGTTTCGTTGTTTGAATGGGATTCTGCATATGCAATCAGACCTCCACTACTGAC
                      ____________________________________________________________
consensus             AATTTTCGTTTCGTTGTTTGAATGGGATTCTGCATATGCAATCAGACCTCCACTACTGAC
 
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JMSF036H10+           AGAGACAAGAACAAGAATCTTGGAGTAGTTAGAAGGCTTGGTATGCAGAACTCTGCTCAA
JMSF030G19+           AGAGACAAGAACAAGAATCTTGGAGTAGTTAGAAGGCTTGGTATGCAGAACTCTGCTCAA
                      ____________________________________________________________
consensus             AGAGACAAGAACAAGAATCTTGGAGTAGTTAGAAGGCTTGGTATGCAGAACTCTGCTCAA
 
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JMSF036H10+           AAATGAGAAGGCACCCATCTTCTTCTTCTCTCAGCCTTTCAACGCTCTCAATTCTCACCT
JMSF030G19+           AAATGAGAAAGCACCCATCTTCTTCTTCTCTCAGCCTTTCAACGCTCTCAATTCTCACCT
                      ____________________________________________________________
consensus             AAATGAGAAGGCACCCATCTTCTTCTTCTCTCAGCCTTTCAACGCTCTCAATTCTCACCT
 
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JMSF036H10+           GCCACTCAAGAGTGTCTGAAAGAAAACTCC                              
JMSF030G19+           GCCACTCAAGAGTGTCTGAAAGAAAACTCCCCGAATTTCCCAGTAAACGGCATTTTTTGT
                      ____________________________________________________________
consensus             GCCACTCAAGAGTGTCTGAAAGAAAACTCCCCGAATTTCCCAGTAAACGGCATTTTTTGT
 
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JMSF030G19+           TTATTTATTTATTGGATAATTATGTCTTCTTCCTTGACGACATGTAGCAGTTTTATTCGG
                      ____________________________________________________________
consensus             TTATTTATTTATTGGATAATTATGTCTTCTTCCTTGACGACATGTAGCAGTTTTATTCGG
 
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JMSF030G19+           TCCAGCCCCTTGGAATACGGCTTATACGAGTCTACGGTCTACACCACCGCATTCTGAGAT
                      ____________________________________________________________
consensus             TCCAGCCCCTTGGAATACGGCTTATACGAGTCTACGGTCTACACCACCGCATTCTGAGAT
 
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JMSF030G19+           CTTACCCTTCTTTCACTCTCACCATTAAAGAAGGGTAACCCATCGAAATAATCTCCCTTC
                      ____________________________________________________________
consensus             CTTACCCTTCTTTCACTCTCACCATTAAAGAAGGGTAACCCATCGAAATAATCTCCCTTC