| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF008F13 | Sequence | 487 | 006569 (4) | ref|XP_009772913.1| | 2e-78 | PREDICTED: pyridine nucleotide-disulfide oxidoreductase domain-containing prote | 500 | 005715 (5) | ref|XP_006340622.1| | 3e-92 | PREDICTED: pyridine nucleotide-disulfide oxidoreductase domain-containing prote |
| JMFF027D01 | Sequence | 519 | 006569 (4) | ref|XP_009772913.1| | 5e-87 | PREDICTED: pyridine nucleotide-disulfide oxidoreductase domain-containing prote | 525 | 005715 (5) | ref|XP_006340622.1| | 1e-99 | PREDICTED: pyridine nucleotide-disulfide oxidoreductase domain-containing prote |
| JMSF011D05 | Sequence | 304 | 006569 (4) | ref|XP_007046942.1| | 1e-40 | FAD/NAD(P)-binding oxidoreductase family protein isoform 2, partial [Theobroma | 539 | 005715 (5) | ref|XP_006340622.1| | 1e-100 | PREDICTED: pyridine nucleotide-disulfide oxidoreductase domain-containing prote |
| JMSF029I20 | Sequence | 665 | 006569 (4) | ref|XP_009772913.1| | 3e-104 | PREDICTED: pyridine nucleotide-disulfide oxidoreductase domain-containing prote | 766 | 005715 (5) | ref|XP_002266788.1| | 2e-156 | PREDICTED: pyridine nucleotide-disulfide oxidoreductase domain-containing prote |
This contig is upended
. : . : . : . : . : . :
JMSF029I20+ TGTGA
____________________________________________________________
consensus TGTGA
. : . : . : . : . : . :
JMSF029I20+ GTGCACTTCGTAGGCAGTGAGACCAAAAGGCTGATTTCTCTAACTTATTATGCAGTCGGG
____________________________________________________________
consensus GTGCACTTCGTAGGCAGTGAGACCAAAAGGCTGATTTCTCTAACTTATTATGCAGTCGGG
. : . : . : . : . : . :
JMFF027D01+ TGGATCCA
JMSF029I20+ CATTAAAAGATGGATTTCCTTGTAGAGCTTCAGGTGGTGAAGAATCCAAAAGTGGATCCA
____________________________________________________________
consensus CATTAAAAGATGGATTTCCTTGTAGAGCTTCAGGTGGTGAAGAATCCAAAAGTGGATCCA
. : . : . : . : . : . :
JMFF027D01+ AAAATTTGCAGAACTTGTCTAGCTGGTTCTCATACCTCGCAAAAGCCTTGGCATCACGTT
JMFF008F13+ GGTTCTCATACCTCGCAAAAGCCTTGGCATCACGTT
JMSF029I20+ AAAATTTGCAGAACTTGTCTAGCTGGTTCTCATACCTCGCAAAAGCCTTGGCATCACGTT
____________________________________________________________
consensus AAAATTTGCAGAACTTGTCTAGCTGGTTCTCATACCTCGCAAAAGCCTTGGCATCACGTT
. : . : . : . : . : . :
JMFF027D01+ CGGAGAACTTGGAAATTTCAGAATAGTTATGCTGTTTATCTCTACCAAGCATGAGATAGC
JMFF008F13+ CGGAGAACTTGGAAATTTCAGAATAGTTATGCTGTTTATCTCTACCAAGCATGAGATAGC
JMSF029I20+ CGGAGAACTTGGAAATTTCAGAATAGTTATGCTGTTTATCTCTACCAAGCATGAGATAGC
____________________________________________________________
consensus CGGAGAACTTGGAAATTTCAGAATAGTTATGCTGTTTATCTCTACCAAGCATGAGATAGC
. : . : . : . : . : . :
JMFF027D01+ GTCCATCACGACAGGGAGTAAATGATGATGGATTTCTCTTTAATAGCTTTAATCCATGTC
JMFF008F13+ GTCCATCACGACAGGGAGTAAATGATGATGGATTTCTCTTTAATAGCTTTAATCCATGTC
JMSF029I20+ GTCCATCACGACAGGGAGTAAATGATGATGGATTTCTCTTTAATAGCTTTAATCCATGTC
____________________________________________________________
consensus GTCCATCACGACAGGGAGTAAATGATGATGGATTTCTCTTTAATAGCTTTAATCCATGTC
. : . : . : . : . : . :
JMFF027D01+ GTTTTAGCTCTAGTTCTTTGATGACGCAGGGGCGGAGGAGGCTTTGGAGGTAGCTACAAC
JMFF008F13+ GTTTTAGCTCTAGTTCTTTGATGACGCAGGGGCGGAGGAGGCTTTGGAGGTAGCTACAAC
JMSF011D05+ GGGGCGGAGGAGGCTTTGGAGGTAGCTACAAC
JMSF029I20+ GTTTTAGCTCTAGTTCTTTGATGACGCAGGGGCGGAGGAGGCTTTGGAGGTAGCTACAAC
____________________________________________________________
consensus GTTTTAGCTCTAGTTCTTTGATGACGCAGGGGCGGAGGAGGCTTTGGAGGTAGCTACAAC
. : . : . : . : . : . :
JMFF027D01+ GGGAGAATTTGAAGCCAGGAACAAGCTCCTCGGTGACGGCAGCACCGCCGATGACGTGGC
JMFF008F13+ GGGAGAATTTGAAGCCAGGAACAAGCTCCTCGGTGACGGCAGCACCGCCGATGACGTGGC
JMSF011D05+ GGGAGAATTTGAAGCCAGGAACAAGCTCCTCGGTGACGGCAGCACCGCCGATGACGTGGC
JMSF029I20+ GGGAGAATTTGAAGCCAGGAACAAGCTCCTCGGTGACGGCAGCACCGCCGATGACGTGGC
____________________________________________________________
consensus GGGAGAATTTGAAGCCAGGAACAAGCTCCTCGGTGACGGCAGCACCGCCGATGACGTGGC
. : . : . : . : . : . :
JMFF027D01+ GTCTCTCGAGGACGGCGACGGAGAGGCCGGAGCGAGCAAGGTAGGCAGCAGCGGTTAGGC
JMFF008F13+ GTCTCTCGAGGACGGCGACGGAGAGGCCGGAGCGAGCAAGGTAGGCAGCAGCGGTTAGGC
JMSF011D05+ GTCTCTCGAGGACGGCGACGGAGAGGCCGGAGCGAGCAAGGTAGGCAGCAGCGGTTAGGC
JMSF029I20+ GTCTCTCGAGGACGGCGACGGAGAGGCCGGAGCGAGCAAGGTAGGCAGCAGCGGTTAGGC
____________________________________________________________
consensus GTCTCTCGAGGACGGCGACGGAGAGGCCGGAGCGAGCAAGGTAGGCAGCAGCGGTTAGGC
. : . : . : . : . : . :
JMFF027D01+ CGTTATGGCCACCGCCGATCACCAGTGCGTCCCATTTCTTCTCCTTCAAAGCTCGCTCCG
JMFF008F13+ CGTTATGGCCACCGCCGATCACCAGTGCGTCCCATTTCTTCTCCTTCAAAGCTCGCTCCG
JMSF011D05+ CGTTATGGCCACCGCCGATCACCAGTGCGTCCCATTTCTTCTCCTTCAAAGCTCGCTCCG
JMSF029I20+ CGTTATGGCCACCGCCGATCACCAGTGCGTCCCATTTCTTCTCCTTCAAAGCTCGCTCCG
____________________________________________________________
consensus CGTTATGGCCACCGCCGATCACCAGTGCGTCCCATTTCTTCTCCTTCAAAGCTCGCTCCG
. : . : . : . : . : . :
JMFF027D01+ AGTTCGCAGTAGAGCTGCCGCTCAGTTTCCGGCACTGTCGCCACATTTCTTATAATTTGC
JMFF008F13+ AGTTCGCAGTAGAGCTGCCGCTCAGTTTCCGGCACTGTCGCCACATTTCTTATAATTTGC
JMSF011D05+ AGTTCGCAGTAGAGCTGCCGCTCAGTTTCCGGCACTGTCGCCACATTTCTTATAATTTGC
JMSF029I20+ AGTTCGCAGTAGAGCTGCCGCTCAGTTTCCGGCACTGTCGCCACATTTCTTATAATTTGC
____________________________________________________________
consensus AGTTCGCAGTAGAGCTGCCGCTCAGTTTCCGGCACTGTCGCCACATTTCTTATAATTTGC
. : . : . : . : . : . :
JMFF027D01+ TATCACCTCCGCTCCACTCTCTCTCTCAAT
JMFF008F13+ TATCACCTCCGCTCCACTCTCTCTCTCAAT
JMSF011D05+ TATCACCTCCGCTCCACTCTCTCTCTCAAT
JMSF029I20+ TATCACCTCCGCTCCACTCTCTCTCTCAATTACCAGCTGCTTGTCGCGTACTTATATGTC
____________________________________________________________
consensus TATCACCTCCGCTCCACTCTCTCTCTCAATTACCAGCTGCTTGTCGCGTACTTATATGTC