Contig 006553:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF027F14Sequence654006553 (2)ref|XP_009416896.1|2e-60PREDICTED: tubby-like F-box protein 8 [Musa acuminata subsp. malaccensis] ref|X774002877 (3)gb|KDP30771.1|2e-87hypothetical protein JCGZ_15200 [Jatropha curcas]
JMSF040L01Sequence654006553 (2)ref|XP_009416896.1|7e-60PREDICTED: tubby-like F-box protein 8 [Musa acuminata subsp. malaccensis] ref|X923002877 (3)emb|CAN82256.1|3e-106hypothetical protein VITISV_009404 [Vitis vinifera]

Alignment

This contig is upended


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JMSF040L01+                 TTCTACCAGCAAGGCTGGGNTAAGACAGAGGAAAAGGCGGTAAGTTAAATTAGA
JMSF027F14+                 TTCTACCAGCAAGGCTGGGCTAAGACAGAGGAAAAGGCGGTAAGTTAAATTAGA
                      ____________________________________________________________
consensus                   TTCTACCAGCAAGGCTGGGCTAAGACAGAGGAAAAGGCGGTAAGTTAAATTAGA
 
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JMSF040L01+           TTTGTCTCTCTTTATGAAACATTGAATGGCTCCATCTCGTTGCCCAGGCTGCTTCAGAGA
JMSF027F14+           TTTGTCTCTCTTTATGAAACATTGAATGGCTCCATCTCGTTGCCCAGGCTGCTTCAGAGA
                      ____________________________________________________________
consensus             TTTGTCTCTCTTTATGAAACATTGAATGGCTCCATCTCGTTGCCCAGGCTGCTTCAGAGA
 
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JMSF040L01+           GACTGGGAAAGTCAACTTTCCTGAGAACTCTGGATTATGAACAATTTCCTTGCACATCTC
JMSF027F14+           GACTGGGAAAGTCAACTTTCCTGAGAACTCTGGATTATGAACAATTTCCTTGCACATCTC
                      ____________________________________________________________
consensus             GACTGGGAAAGTCAACTTTCCTGAGAACTCTGGATTATGAACAATTTCCTTGCACATCTC
 
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JMSF040L01+           TCTCCATGATCGGCAAACACCAGCACAGGCAACAACATGCTTGAGCAGGCCACGCACTCT
JMSF027F14+           TCTCCATGATCGGCAAACACCAGCACAGGCAACAACATGCTTGAGCAGGCCACGCACTCT
                      ____________________________________________________________
consensus             TCTCCATGATCGGCAAACACCAGCACAGGCAACAACATGCTTGAGCAGGCCACGCACTCT
 
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JMSF040L01+           CACTAGACTCCAACCTTTTAATTACATCTCGAAGTAACTCAGGTGGGAGGCTAGCCCAAC
JMSF027F14+           CACTAGACTCCAACCTTTTAATTACATCTCGAAGTAACTCAGGTGGGAGGCTAGCCCAAC
                      ____________________________________________________________
consensus             CACTAGACTCCAACCTTTTAATTACATCTCGAAGTAACTCAGGTGGGAGGCTAGCCCAAC
 
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JMSF040L01+           AGCTGTTCTGGATGATTGCAGGCTGGTCATGCAACTCATGGACAGCCCCATGAGACTTCC
JMSF027F14+           AGCTGTTCTGGATGATTGCAGGCTGGTCATGCAACTCATGGACAGCCCCATGAGACTTCC
                      ____________________________________________________________
consensus             AGCTGTTCTGGATGATTGCAGGCTGGTCATGCAACTCATGGACAGCCCCATGAGACTTCC
 
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JMSF040L01+           CCCTCTGATGGCCAGTCAACCTAAACTCAAAACTTCGCCTTGATAAGCTCCCAATACTAT
JMSF027F14+           CCCTCTGATGGCCAGTCAACCTAAACTCAAAACTTCGCCTTGATAAGCTCCCAATACTAT
                      ____________________________________________________________
consensus             CCCTCTGATGGCCAGTCAACCTAAACTCAAAACTTCGCCTTGATAAGCTCCCAATACTAT
 
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JMSF040L01+           CCTTAATGTCACGAGCTATACTTCTAAATGACATTTACTTTGAATGTGTGATGCTCCCTG
JMSF027F14+           CCTTAATGTCACGAGCTATACTTCTAAATGACATTTACTTTGAATGTGTGATGCTCCCTG
                      ____________________________________________________________
consensus             CCTTAATGTCACGAGCTATACTTCTAAATGACATTTACTTTGAATGTGTGATGCTCCCTG
 
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JMSF040L01+           GACTTGGTTTATGTATCCGTGTCTTTTGAGATGGTTAGTCCATGGACAATAAATATACCC
JMSF027F14+           GACTTGGTTTATGTATCCGTGTCTTTTGAGATGGTTAGTCCATGGACAATAAATATACCC
                      ____________________________________________________________
consensus             GACTTGGTTTATGTATCCGTGTCTTTTGAGATGGTTAGTCCATGGACAATAAATATACCC
 
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JMSF040L01+           CAGCACAGAGTCTTCCCCCCAGGATGATTATACTTTCTATCTATCTCTCTCTCTCTTAAA
JMSF027F14+           CAGCACAGAGTCTTCCCCCCAGGATGATTATACTTTCTATCTATCTCTCTCTCTCTTAAA
                      ____________________________________________________________
consensus             CAGCACAGAGTCTTCCCCCCAGGATGATTATACTTTCTATCTATCTCTCTCTCTCTTAAA
 
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JMSF040L01+           GTCGAAGCTTTCTCTCTCTAGGCACTCCGGAAGGAAGTCCACGCTCTCCGTTTGCCCCTC
JMSF027F14+           GTCGAAGCTTTCTCTCTCTAGGCACTCCGGAAGGAAGTCCACGCTCTCCGTTTGCCCCTC
                      ____________________________________________________________
consensus             GTCGAAGCTTTCTCTCTCTAGGCACTCCGGAAGGAAGTCCACGCTCTCCGTTTGCCCCTC