Contig 006544:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF015A14Sequence441006544 (3)ref|XP_009592048.1|3e-19PREDICTED: putative tRNA pseudouridine synthase isoform X2 [Nicotiana tomentosi773001494 (3)ref|XP_011080768.1|137PREDICTED: putative tRNA pseudouridine synthase [Sesamum indicum]
JMSF025L02Sequence657006544 (3)ref|XP_009592048.1|1e-79PREDICTED: putative tRNA pseudouridine synthase isoform X2 [Nicotiana tomentosi751001494 (3)ref|XP_006348028.1|2e-80PREDICTED: putative tRNA pseudouridine synthase-like isoform X2 [Solanum tubero
JMSF050A15Sequence657006544 (3)ref|XP_009592048.1|1e-83PREDICTED: putative tRNA pseudouridine synthase isoform X2 [Nicotiana tomentosi704001494 (3)ref|XP_006348028.1|2e-37PREDICTED: putative tRNA pseudouridine synthase-like isoform X2 [Solanum tubero

Alignment

This contig is upended


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JMSF050A15+                                                        TGCGAACATTGCACT
                      ____________________________________________________________
consensus                                                          TGCGAACATTGCACT
 
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JMSF050A15+           CCTTTCTAGCATCAAATGTCTTTTGCAATGGCAGTATGCTGAACACTCTGATGCTCTCAG
JMSF025L02+              TTCTAGCATCAAATGTCTTTTGCAATGGCAGTATGCTGAACACTCTGATGCTCTCAG
                      ____________________________________________________________
consensus             CCTTTCTAGCATCAAATGTCTTTTGCAATGGCAGTATGCTGAACACTCTGATGCTCTCAG
 
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JMSF050A15+           GGAGATAAGAATTCACACAAGTAGCAAGACCCATGCCATTGGGATCATCCTTCCATGCAT
JMSF025L02+           GGAGATAAGAATTCACACAAGTAGCAAGACCCATGCCATTGGGATCATCCTTCCATGCAT
                      ____________________________________________________________
consensus             GGAGATAAGAATTCACACAAGTAGCAAGACCCATGCCATTGGGATCATCCTTCCATGCAT
 
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JMSF050A15+           GCTCAGGGATTTCCATTTTCAGAGATATAACAGTAGCCAATGAATGGACTCCTTTATCAG
JMSF025L02+           GCTCAGGGATTTCCATTTTCAGAGATATAACAGTAGCCAATGAATGGACTCCTTTATCAG
                      ____________________________________________________________
consensus             GCTCAGGGATTTCCATTTTCAGAGATATAACAGTAGCCAATGAATGGACTCCTTTATCAG
 
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JMSF050A15+           TTCGGCTACTTCTTGCCCAGCCAATTTTGTACAAATTCCCAAAATTAGTATCTTTAATAC
JMSF025L02+           TTCGGCTACTTCTTGCCCAGCCAATTTTGTACAAATTCCCAAAATTAGTATCTTTAATAC
                      ____________________________________________________________
consensus             TTCGGCTACTTCTTGCCCAGCCAATTTTGTACAAATTCCCAAAATTAGTATCTTTAATAC
 
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JMSF015A14+                                                     TAGATAGCGCGTGCACAT
JMSF050A15+           CACCAGCATTGAAAATAGCCTTTTCCAATTCACCTTCAATGGTAGATAGCGCGTGCACAT
JMSF025L02+           CACCAGCATTGAAAATAGCCTTTTCCAATTCACCTTCAATGGTAGATAGCGCGTGCACAT
                      ____________________________________________________________
consensus             CACCAGCATTGAAAATAGCCTTTTCCAATTCACCTTCAATGGTAGATAGCGCGTGCACAT
 
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JMSF015A14+           CTCTTTGCATTTGAAGTCCTCGATAATCGGAGCCGACGTAACCGACTCGCATAACGACTT
JMSF050A15+           CTCTTTGCATTTGAAGTCCTCGATAATCGGAGCCGACGTAACCGACTCGCATAACGACTT
JMSF025L02+           CTCTTTGCATTTGAAGTCCTCGATAATCGGAGCCGACGTAACCGACTCGCATAACGACTT
                      ____________________________________________________________
consensus             CTCTTTGCATTTGAAGTCCTCGATAATCGGAGCCGACGTAACCGACTCGCATAACGACTT
 
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JMSF015A14+           TCTTTTTCCGGAAAGGTTCCCATTTGGCGGCGGAGATTCTGTGTGGCGCGTTAGACGGCG
JMSF050A15+           TCTTTTTCCGGAAAGGTTCCCATTTGGCGGCGGAGATTCTGTGTGGCGCGTTAGACGGCG
JMSF025L02+           TCTTTTTCCGGAAAGGTTCCCATTTGGCGGCGGAGATTCTGTGTGGCGCGTTAGACGGCG
                      ____________________________________________________________
consensus             TCTTTTTCCGGAAAGGTTCCCATTTGGCGGCGGAGATTCTGTGTGGCGCGTTAGACGGCG
 
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JMSF015A14+           GCGGAGCTACAACTTCTGCGGTGGTGCAAGGCTCGAGAGAAAGTGGCGCTACCGAAGATG
JMSF050A15+           GCGGAGCTACAACTTCTGCGGTGGTGCAAGGCTCGAGAGAAAGTGGCGCTACCGAAGATG
JMSF025L02+           GCGGAGCTACAACTTCTGCGGTGGTGCAAGGCTCGAGAGAAAGTGGCGCTACCGAAGATG
                      ____________________________________________________________
consensus             GCGGAGCTACAACTTCTGCGGTGGTGCAAGGCTCGAGAGAAAGTGGCGCTACCGAAGATG
 
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JMSF015A14+           AAGAGCAGAAGCAAACAAACAATGTTAAACGTTTCTGAGGGATTGTAAATTGGAGGGTCC
JMSF050A15+           AAGAGCAGAAGCAAACAAACAATGTTAAACGTTTCTGAGGGATTGTAAATTGGAGGGTCC
JMSF025L02+           AAGAGCAGAAGCAAACAAACAATGTTAAACGTTTCTGAGGGATTGTAAATTGGAGGGTCC
                      ____________________________________________________________
consensus             AAGAGCAGAAGCAAACAAACAATGTTAAACGTTTCTGAGGGATTGTAAATTGGAGGGTCC
 
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JMSF015A14+           TGAAAGGAGTGGGGGGACGGAGAGAGATTGAGAGGCGTAAAGACGAGACCGCCATAGCCA
JMSF050A15+           TGAAAGGAGTGGGGGGACGGAGAGAGATTGAGAGGCGTAAAGACGAGACCGCCATAGCCA
JMSF025L02+           TGAAAGGAGTGGGGGGACGGAGAGAGATTGAGAGGCGTAAAGACGAGACCGCCATAGCCA
                      ____________________________________________________________
consensus             TGAAAGGAGTGGGGGGACGGAGAGAGATTGAGAGGCGTAAAGACGAGACCGCCATAGCCA
 
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JMSF015A14+           CTGCACACTGTGAGCTCGTTAGCTCGCCCAGACTCT                        
JMSF050A15+           CTGCACACTGTGAGCTCGTTAGCTCGCCCAGACTCT                        
JMSF025L02+           CTGCACACTGTGAGCTCGTTAGCTCGCCCAGACTCTACAGTGCAGATAAATTCCGGGTCC
                      ____________________________________________________________
consensus             CTGCACACTGTGAGCTCGTTAGCTCGCCCAGACTCTACAGTGCAGATAAATTCCGGGTCC