Contig 006534:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF024M21Sequence629006534 (4)703010015 (3)
JMSF032H23Sequence697006534 (4)605010015 (3)
JMSF037I21Sequence641006534 (4)163004406 (4)
JMSF043I17Sequence790006534 (4)699010015 (3)

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF032H23+ TGATATAAAACCTAAATCTAAACACACTCAGACAGTTCAA
JMSF043I17+ ACTCAGACAGTTCAA
                      ____________________________________________________________
consensus TGATATAAAACCTAAATCTAAACACACTCAGACAGTTCAA
 
. : . : . : . : . : . :
JMSF032H23+ ATATTGACAGTTTCACTTTTACAACACAGAAAAATTGCACTCAGTAATCATGCATTAAAT
JMSF043I17+ ATATTGACAGTTTCACTTTTACAACACAGAAAAATTGCACTCAGTAATCATGCATTAAAT
JMSF037I21+ CACTCAGTAATCATGCATTAAAT
JMSF024M21+ AAATTGCACTCAGTAATCATGCATTAAAT
                      ____________________________________________________________
consensus ATATTGACAGTTTCACTTTTACAACACAGAAAAATTGCACTCAGTAATCATGCATTAAAT
 
. : . : . : . : . : . :
JMSF032H23+ ACTCAGTTCTACAATTATAGGTAGCAAAAGGAAGCAGCCAATTAACACTCCAGATAACAT
JMSF043I17+ ACTCAGTTCTACAATTATAGGTAGCAAAAGGAAGCAGCCAATTAACACTCCAGATAACAT
JMSF037I21+ ACTCAGTTCTACAATTATAGGTAGCAAAAGGAAGCAGCCAATTAACACTCCAGATAACAT
JMSF024M21+ ACTCAGTTCTACAATTATAGGTAGCAAAAGGAAGCAGCCAATTAACACTCCAGATAACAT
                      ____________________________________________________________
consensus ACTCAGTTCTACAATTATAGGTAGCAAAAGGAAGCAGCCAATTAACACTCCAGATAACAT
 
. : . : . : . : . : . :
JMSF032H23+ ACGCACATTAAGATTTTAGTATTTAAGCATTACCTTTGCCAAATGTTGTTGTATGTACAT
JMSF043I17+ ACGCACATTAAGATTTTAGTATTTAAGCATTACCTTTGCCAAATGTTGTTGTATGTACAT
JMSF037I21+ ACGCACATTAAGATTTTAGTATTTAAGCATTACCTTTGCCAAATGTTGTTGTATGTACAT
JMSF024M21+ ACGCACATTAAGATTTTAGTATTTAAGCATTACCTTTGCCAAATGTTGTTGTATGTACAT
                      ____________________________________________________________
consensus ACGCACATTAAGATTTTAGTATTTAAGCATTACCTTTGCCAAATGTTGTTGTATGTACAT
 
. : . : . : . : . : . :
JMSF032H23+ TGTTGAGACAATTTTTACATCTTTACGCCATTGTTAAACTGTAAACTTAGTGTTATTGTT
JMSF043I17+ TGTTGAGACAATTTTTACATCTTTACGCCATTGTTAAACTGTAAACTTAGTGTTATTGTT
JMSF037I21+ TGTTGAGACAATTTTTACATCTTTACGCCATTGTTAAACTGTAAACTTAGTGTTATTGTT
JMSF024M21+ TGTTGAGACAATTTTTACATCTTTACGCCATTGTTAAACTGTAAACTTAGTGTTATTGTT
                      ____________________________________________________________
consensus TGTTGAGACAATTTTTACATCTTTACGCCATTGTTAAACTGTAAACTTAGTGTTATTGTT
 
. : . : . : . : . : . :
JMSF032H23+ CACAAAATACCTTGATATTAGGTTTCTCGACACCGTGTAGAATCCACAGATATTAGACTG
JMSF043I17+ CACAAAATACCTTGATATTAGGTTTCTCGACACCGTGTAGAATCCACAGATATTAGACTG
JMSF037I21+ CACAAAATACCTTGATATTAGGTTTCTCGACACCGTGTAGAATCCACAGATATTAGACTG
JMSF024M21+ CACAAAATACCTTGATATTAGGTTTCTCGACACCGTGTAGAATCCACAGATATTAGACTG
                      ____________________________________________________________
consensus CACAAAATACCTTGATATTAGGTTTCTCGACACCGTGTAGAATCCACAGATATTAGACTG
 
. : . : . : . : . : . :
JMSF032H23+ ACTCATCTCTAACCTCTTACTCTAAAACACCAGAAATGTAACTTTAACAGTAGATCGAAC
JMSF043I17+ ACTCATCTCTAACCTCTTACTCTAAAACACCAGAAATGTAACTTTAACAGTAGATCGAAC
JMSF037I21+ ACTCATCTCTAACCTCTTACTCTAAAACACCAGAAATGTAACTTTAACAGTAGATCGAAC
JMSF024M21+ ACTCATCTCTAACCTCTTACTCTAAAACACCAGAAATGTAACTTTAACAGTAGATCGAAC
                      ____________________________________________________________
consensus ACTCATCTCTAACCTCTTACTCTAAAACACCAGAAATGTAACTTTAACAGTAGATCGAAC
 
. : . : . : . : . : . :
JMSF032H23+ CTAAATCAGTGAAATCGAACTCATAAAGTGTTTTTTTCCTGGAAATCGGCAACATTGTAG
JMSF043I17+ CTAAATCAGTGAAATCGAACTCATAAAGTGTTTTTTTCCTGGAAATCGGCAACATTGTAG
JMSF037I21+ CTAAATCAGTGAAATCGAACTCATAAAGTGTTTTTTTCCTGGAAATCGGCAACATTGTAG
JMSF024M21+ CTAAATCAGTGAAATCGAACTCATAAAGTGTTTTTTTCCTGGAAATCGGCAACATTGTAG
                      ____________________________________________________________
consensus CTAAATCAGTGAAATCGAACTCATAAAGTGTTTTTTTCCTGGAAATCGGCAACATTGTAG
 
. : . : . : . : . : . :
JMSF032H23+ GGTGAGGTGTGTGTATAGACGAACAACAGTTACTTCTACANTGAGAGAGAGAGAGTTCGG
JMSF043I17+ GGTGAGGTGTGTGTATAGACGAACAACAGTTACTTCTACATTGAGAGAGAGAGAGTTCGG
JMSF037I21+ GGTGAGGTGTGTGTATAGACGAACAACAGTTACTTCTACATTGAGAGAGAGAGAGTTCGG
JMSF024M21+ GGTGAGGTGTGTGTATAGACGAACAACAGTTACTTCTACATTGAGAGAGAGAGAGTTCGG
                      ____________________________________________________________
consensus GGTGAGGTGTGTGTATAGACGAACAACAGTTACTTCTACATTGAGAGAGAGAGAGTTCGG
 
. : . : . : . : . : . :
JMSF032H23+ TCAGAATGAAATTCTGCTCGAAATGGAGTTGAAAACCTAAAGAATAGAGCGCCATGAACA
JMSF043I17+ TCAGAATGAAATTCTGCTCGAAATGGAGTTGAAAACCTAAAGAATAGAGCGCCATGAACA
JMSF037I21+ TCAGAATGAAATTCTGCTCGAAATGGAGTTGAAAACCTAAAGAATAGAGCGCCATGAACA
JMSF024M21+ TCAGAATGAAATTCTGCTCGAAATGGAGTTGAAAACCTAAAGAATAGAGCGCCATGAACA
                      ____________________________________________________________
consensus TCAGAATGAAATTCTGCTCGAAATGGAGTTGAAAACCTAAAGAATAGAGCGCCATGAACA
 
. : . : . : . : . : . :
JMSF032H23+ AGATCGGAGTGATTCTACGCGATCTTAGTGAGTGTTAGAGACAGAGAGAGCTAAGGGATT
JMSF043I17+ AGATCGGAGTGATTCTACGCGATCTTAGTGAGTGTTAGAGACAGAGAGAGCTAAGGGATT
JMSF037I21+ AGATCGGAGTGATTCTACGCGATCTTAGTGAGTGTTAGAGACAGAGAGAGCTAAGGGATT
JMSF024M21+ AGATCGGAGTGATTCTACGCGATCTTAGTGAGTGTTAGAGACAGAGAGAGCTAAGGGATT
                      ____________________________________________________________
consensus AGATCGGAGTGATTCTACGCGATCTTAGTGAGTGTTAGAGACAGAGAGAGCTAAGGGATT
 
. : . : . : . : . : . :
JMSF032H23+ GACAACGCGATCGGATTGAGTGTTAGAGAGAGAGAGCTAAGGGATTGGTGTTGTTC
JMSF043I17+ GACAACGCGATCGGATTGAGTGTTAGAGAGAGAGAACTAAGGGATTGGTGTTGTTC
JMSF037I21+ GACAACGCGATCGGATTGAGTGTTAGAGAGAGAGAGCTAAGGGATTGGTGTTGTTCT
JMSF024M21+ GACAACGCGATCGGATTGAGTGTTAGAGAGAGAGAGCTAAGGGATTGGTGTTGTTCTACC
                      ____________________________________________________________
consensus GACAACGCGATCGGATTGAGTGTTAGAGAGAGAGAGCTAAGGGATTGGTGTTGTTCTACC