Contig 006521:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF023H05Sequence669006521 (2)ref|XP_010070108.1|4e-130PREDICTED: protein notum homolog [Eucalyptus grandis] gb|KCW58691.1| hypothetica723006521 (2)ref|XP_009600844.1|4e-113PREDICTED: protein notum homolog [Nicotiana tomentosiformis]

Alignment

This contig is upended


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rJMSF023H05-                                                                     T
                      ____________________________________________________________
consensus                                                                        T
 
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rJMSF023H05-          TGTGTAATTTTAAATGAATGGAAATGGGAATACTACGATAAAGGCTATCATATATTTGAG
                      ____________________________________________________________
consensus             TGTGTAATTTTAAATGAATGGAAATGGGAATACTACGATAAAGGCTATCATATATTTGAG
 
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rJMSF023H05-          CTAGACCTTTAGATAAGAAGGAAGAAAGAAAACAAAAAATGCAGGCAACAGGCTCATCTG
                      ____________________________________________________________
consensus             CTAGACCTTTAGATAAGAAGGAAGAAAGAAAACAAAAAATGCAGGCAACAGGCTCATCTG
 
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rJMSF023H05-          AACACCAGGTTGTGGCATGTCTTATCACACGGATAGGCGCAATCTATGGCTCTCACAATG
                      ____________________________________________________________
consensus             AACACCAGGTTGTGGCATGTCTTATCACACGGATAGGCGCAATCTATGGCTCTCACAATG
 
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rJMSF023H05-          GCTCGTTCATAATACCAGTCTCCCACCGCGATTGCAACCGCCTTGTTACCAATAACAGGG
                      ____________________________________________________________
consensus             GCTCGTTCATAATACCAGTCTCCCACCGCGATTGCAACCGCCTTGTTACCAATAACAGGG
 
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rJMSF023H05-          GAGTTATCAGCAAACCATGTATCCTGCCTCTCTGATTGGCAGTGAGCGAAACACGAGTTT
                      ____________________________________________________________
consensus             GAGTTATCAGCAAACCATGTATCCTGCCTCTCTGATTGGCAGTGAGCGAAACACGAGTTT
 
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rJMSF023H05-          ATGAACAAACCATTCTGTCTAAAACCCGCAAATCTCCTTACAGAAAGTAGCATATGATTT
                      ____________________________________________________________
consensus             ATGAACAAACCATTCTGTCTAAAACCCGCAAATCTCCTTACAGAAAGTAGCATATGATTT
 
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rJMSF023H05-          CTAAATCCTTGCAAAAATTGAATCTGTGACGCAGAACACTTCTGATTGTTCTGTGTACAA
JMSF023H05+                                                              TGTGTACAA
                      ____________________________________________________________
consensus             CTAAATCCTTGCAAAAATTGAATCTGTGACGCAGAACACTTCTGATTGTTCTGTGTACAA
 
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rJMSF023H05-          CCGTGCCAACTGCCATGAGGGTCAGCAGAAGGAGGAGCTAAACTGGCTTGGAGCTGCCAT
JMSF023H05+           CCGTGCCAACTGCCATGAGGGTCAGCAGAAGGAGGAGCTAAACTGGCTNGGAGCTGCCAT
                      ____________________________________________________________
consensus             CCGTGCCAACTGCCATGAGGGTCAGCAGAAGGAGGAGCTAAACTGGCTTGGAGCTGCCAT
 
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rJMSF023H05-          GAATCATAGGCAGCATTGAGAATAAAGAGAGGGGTTCTGACATTGGAGATCACGTTTTGA
JMSF023H05+           GAATCATAGGCAGCATTGAGAATAAAGAGAGGGGTTCTGACATTGGAGATCACGTTTTGA
                      ____________________________________________________________
consensus             GAATCATAGGCAGCATTGAGAATAAAGAGAGGGGTTCTGACATTGGAGATCACGTTTTGA
 
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rJMSF023H05-          GGAAAGAAACAAGAGATTGCATCGAGGTGGTTAGTGCAAGATCTTGGCAGGTTTCTTCCA
JMSF023H05+           GGAAAGAAACAAGAGATTGCATCGAGGTGGTTAGTGCAAGATCTTGGCAGGTTTCTTCCA
                      ____________________________________________________________
consensus             GGAAAGAAACAAGAGATTGCATCGAGGTGGTTAGTGCAAGATCTTGGCAGGTTTCTTCCA
 
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rJMSF023H05-          GCACCCTGCATGTTAACTACAGCTCCAAAAAAATTCCTTAAAGTACGCCCACCAGATACA
JMSF023H05+           GCACCCTGCATGTTAACTACAGCTCCAAAAAAATTCCTTAAAGTACGCCCACCAGATACA
                      ____________________________________________________________
consensus             GCACCCTGCATGTTAACTACAGCTCCAAAAAAATTCCTTAAAGTACGCCCACCAGATACA
 
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rJMSF023H05-          TCCACTGCGTCCATAAATAACCCAGCATCACTCAGGCACTTCACTTTAGTATTACTCGAA
JMSF023H05+           TCCACTGCGTCCATAAATAACCCAGCATCACTCAGGCACTTCACTTTAGTATTACTCGAA
                      ____________________________________________________________
consensus             TCCACTGCGTCCATAAATAACCCAGCATCACTCAGGCACTTCACTTTAGTATTACTCGAA
 
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rJMSF023H05-          AA                                                          
JMSF023H05+           AAAAAGTTCCGAAACTCATCACAGTGTAATATCGTAGCAAGACCACCAGCTGAGCATCCA
                      ____________________________________________________________
consensus             AAAAAGTTCCGAAACTCATCACAGTGTAATATCGTAGCAAGACCACCAGCTGAGCATCCA
 
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JMSF023H05+           GAAAGAAGAGCTTGTCGGGCATAACGCATTCCCTTCGACATTAGATCATCAACTGCTGCT
                      ____________________________________________________________
consensus             GAAAGAAGAGCTTGTCGGGCATAACGCATTCCCTTCGACATTAGATCATCAACTGCTGCT
 
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JMSF023H05+           TGCCATATACGTTGTCCTCTAAACTGCAGCCCTGCAGCCCGGTTTTCACTGTCTCCAGTA
                      ____________________________________________________________
consensus             TGCCATATACGTTGTCCTCTAAACTGCAGCCCTGCAGCCCGGTTTTCACTGTCTCCAGTA
 
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JMSF023H05+           AATGAAGCACCATCACAGTAACGAACTTTTACTCTATTCCAGTTGTAAAAATCTGGATTT
                      ____________________________________________________________
consensus             AATGAAGCACCATCACAGTAACGAACTTTTACTCTATTCCAGTTGTAAAAATCTGGATTT
 
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JMSF023H05+           TCTTCAGCCCTATTGCTCAAAATTCCAGTAAATGGAAGCCACTTTTCCATGAACCTCGAT
                      ____________________________________________________________
consensus             TCTTCAGCCCTATTGCTCAAAATTCCAGTAAATGGAAGCCACTTTTCCATGAACCTCGAT
 
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JMSF023H05+           GACCCACGTCTTGTGGTTTTGCGGTAAACGCAGGACCTAAGGTTGTTACACCATCCCCCC
                      ____________________________________________________________
consensus             GACCCACGTCTTGTGGTTTTGCGGTAAACGCAGGACCTAAGGTTGTTACACCATCCCCCC