Contig 006520:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF006F24Sequence604006520 (6)ref|XP_009620915.1|5e-88PREDICTED: guanosine nucleotide diphosphate dissociation inhibitor 2-like [Nico785002683 (6)ref|XP_004251972.1|4e-136PREDICTED: guanosine nucleotide diphosphate dissociation inhibitor 2 [Solanum l
JMFF008E02Sequence440020564gb|EMS53634.1|2e-06Rab GDP dissociation inhibitor alpha [Triticum urartu]409006520 (6)gb|EMS53634.1|1e-06Rab GDP dissociation inhibitor alpha [Triticum urartu]
JMFF044D14Sequence628006520 (6)ref|XP_009620915.1|7e-116PREDICTED: guanosine nucleotide diphosphate dissociation inhibitor 2-like [Nico658002683 (6)ref|NP_001274860.1|1e-89rab GDP dissociation inhibitor alpha-like [Solanum tuberosum] gb|ABB87112.1| GDP
JMFS030E07Sequence216006520 (6)gb|EYU36620.1|1e-04hypothetical protein MIMGU_mgv1a0073511mg, partial [Erythranthe guttata]
JMSF023E01Sequence688006520 (6)ref|XP_009620915.1|5e-105PREDICTED: guanosine nucleotide diphosphate dissociation inhibitor 2-like [Nico776002683 (6)ref|XP_009629496.1|2e-138PREDICTED: guanosine nucleotide diphosphate dissociation inhibitor 2 [Nicotiana
JMSF041M03Sequence834006520 (6)ref|XP_006344947.1|9e-170PREDICTED: rab GDP dissociation inhibitor alpha-like [Solanum tuberosum]630002683 (6)gb|EPS59445.1|2e-118hypothetical protein M569_15362, partial [Genlisea aurea]

Alignment

This contig is upended


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JMSF041M03+                                                                   TTCA
                      ____________________________________________________________
consensus                                                                     TTCA
 
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JMSF041M03+           ACATATAGGTCCCTCCGTACACAGCANTAAGTCGGGCAAACGCCTGAGGTAGCTCTCCCA
                      ____________________________________________________________
consensus             ACATATAGGTCCCTCCGTACACAGCANTAAGTCGGGCAAACGCCTGAGGTAGCTCTCCCA
 
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JMSF041M03+           AACCATACAAAGGATAAATATAAGGTGATCCTCCTTGAAAACGTGCAAGGGACTCTGAAT
                      ____________________________________________________________
consensus             AACCATACAAAGGATAAATATAAGGTGATCCTCCTTGAAAACGTGCAAGGGACTCTGAAT
 
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JMSF041M03+           ATAACTTTATTCTCTTCACAGTATCTAGAGCAGGTTCATTTAAGTAGCAGTCATCTCTGT
                      ____________________________________________________________
consensus             ATAACTTTATTCTCTTCACAGTATCTAGAGCAGGTTCATTTAAGTAGCAGTCATCTCTGT
 
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JMFF044D14+                                                 TCGTCAAGACCAAATTTTCCAA
JMSF041M03+           GTAGTGCCAATGCATGGCCGATGAAGTCCACAGTGTTGTCGTCAAGACCAAATTTTCCAA
                      ____________________________________________________________
consensus             GTAGTGCCAATGCATGGCCGATGAAGTCCACAGTGTTGTCGTCAAGACCAAATTTTCCAA
 
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JMFF044D14+           TTAGCTCTTTAGCTGTCACTCTTGTAAGATCCATTCCGTCATGTGTTTTAGGATCACTCT
JMFF006F24+                                          CATTCCGTCATGTGTTTTAGGATCACTCT
JMSF041M03+           TTAGCTCTTTAGCTGTCACTCTTGTAAGATCCATTCCGTCATGTGTTTTAGGATCACTCT
JMSF023E01+                                          CATTCCGTCATGTGTTTTAGGATCACTCT
                      ____________________________________________________________
consensus             TTAGCTCTTTAGCTGTCACTCTTGTAAGATCCATTCCGTCATGTGTTTTAGGATCACTCT
 
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JMFF044D14+           CATTATAATCCTGGACATATATGAAGAACTTTCGAGCA-CGCCGCTTCTCAAAGATGCCC
JMFF006F24+           CATTATAATCCTGGACATATATGAAGAACTTTCGAGCACCGCCGCTTCTCAAAGATGCCC
JMSF041M03+           CATTATAATCCTGGACATATATGAAGAACTTTCGAGCA-CGCCGCTTCTCAAAGATGCCC
JMSF023E01+           CATTATAATCCTGGACATATATGAAGAACTTTCGAGCA-CGCCGCTTCTCAAAGATGCCC
                      ____________________________________________________________
consensus             CATTATAATCCTGGACATATATGAAGAACTTTCGAGCA-CGCCGCTTCTCAAAGATGCCC
 
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JMFF044D14+           ATAAGTGGAGACTTAAGGGCCTCCATATCAGTAGCTGGGACCTTGTGGACCTTTCCTTTG
JMFF006F24+           ATAAGTGGAGACTTAAGGGCCTCCATATCAGTAGCTGGGACCTTGTGGACCTTTCCTTTG
JMSF041M03+           ATAAGTGGAGACTTAAGGGCCTCCATATCAGTAGCTGGGACCTTGTGGACCTTTCCTTTG
JMSF023E01+           ATAAGTGGAGACTTAAGGGCCTCCATATCAGTAGCTGGGACCTTGTGGACCTTTCCTTTG
                      ____________________________________________________________
consensus             ATAAGTGGAGACTTAAGGGCCTCCATATCAGTAGCTGGGACCTTGTGGACCTTTCCTTTG
 
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JMFF044D14+           TTATACACAAAGCTGCCATCAACTGCTTTGAAGTACAGATATTTTGTAACATCAGTATGA
JMFF006F24+           TTATACACAAAGCTGCCATCAACTGCTTTGAAGTACAGATATTTTGTAACATCAGTATGA
JMSF041M03+           TTATACACAAAGCTGCCATCAACTGCTTTGAAGTACAGATATTTTGTAACATCAGTATGA
JMSF023E01+           TTATACACAAAGCTGCCATCAACTGCTTTGAAGTACAGATATTTTGTAACATCAGTATGA
                      ____________________________________________________________
consensus             TTATACACAAAGCTGCCATCAACTGCTTTGAAGTACAGATATTTTGTAACATCAGTATGA
 
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JMFF044D14+           ATGAGAACCCGCACAAGAGCACCATTTGCCATAATAAACTTAGGAATCATGTCAACATTG
JMFF006F24+           ATGAGAACCCGCACAAGAGCACCATTTGCCATAATAAACTTAGGAATCATGTCAACATTG
JMSF041M03+           ATGAGAACCCGCACAAGAGCACCATTTGCCATAATAAACTTAGGAATCATGTCAACATTG
JMSF023E01+           ATGAGAACCCGCACAAGAGCACCATTTGCCATAATAAACTTAGGAATCATGTCAACATTG
                      ____________________________________________________________
consensus             ATGAGAACCCGCACAAGAGCACCATTTGCCATAATAAACTTAGGAATCATGTCAACATTG
 
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JMFF044D14+           TAGTCCCTACTAGATCCAAGCTCGGCAGGGGGCTTGTCACTTCCTCTAAACCTCTTCCAG
JMFF006F24+           TAGTCCCTACTAGATCCAAGCTCGGCAGGGGGCTTGTCACTTCCTCTAAACCTCTTCCAG
JMSF041M03+           TAGTCCCTACTAGATCCAAGCTCGGCAGGGGGCTTGTCACTTCCTCTAAACCTCTTCCAG
JMSF023E01+           TAGTCCCTACTAGATCCAAGCTCGGCAGGGGGCTTGTCACTTCCTCTAAACCTCTTCCAG
                      ____________________________________________________________
consensus             TAGTCCCTACTAGATCCAAGCTCGGCAGGGGGCTTGTCACTTCCTCTAAACCTCTTCCAG
 
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JMFF044D14+           AGCTGAACAAGGTTGAGGGAAGTTGATTCTCCTCCATAGTAGTCATTTCTATCCATATGT
JMFF006F24+           AGCTGAACAAGGTTGAGGGAAGTTGATTCTCCTCCATAGTAGTCATTTCTATCCATATGT
JMSF041M03+           AGCTGAACAAGGTTGAGGGAAGTTGATTCTCCTCCATAGTAGTCATTTCTATCCATATGT
JMSF023E01+           AGCTGAACAAGGTTGAGGGAAGTTGATTCTCCTCCATAGTAGTCATTTCTATCCATATGT
                      ____________________________________________________________
consensus             AGCTGAACAAGGTTGAGGGAAGTTGATTCTCCTCCATAGTAGTCATTTCTATCCATATGT
 
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JMFF044D14+           AGAACCTTGAGGCCATCGACGGAGAGTAGACCGCTGAGGATGCATTCCTTGAGACCAGTA
JMFF006F24+           AGAACCTTGAGGCCATCGACGGAGAGTAGACCGCTGAGGATGCATTCCTTGAGACCAGTA
JMSF041M03+           AGAACCTTGAGGCCATCGACGGAGAGTAGACCGCTGAGGATGCATTCCTTGAGACCAGTA
JMFS030E07+                        CATCGACGGAGAGTAGACCGCTGAGGATGCATTCCTTGAGACCAGTA
rJMFF008E02-             ACCTTGAGGCCATCGACGGAGAGTAGACCGCTGAGGATGCATTCCTTGAGACCAGTA
JMSF023E01+           AGAACCTTGAGGCCATCGACGGAGAGTAGACCGCTGAGGATGCATTCCTTGAGACCAGTA
                      ____________________________________________________________
consensus             AGAACCTTGAGGCCATCGACGGAGAGTAGACCGCTGAGGATGCATTCCTTGAGACCAGTA
 
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JMFF044D14+           CCCAGTACAATCACATCATACTCTTCATCCATTACTCTTTCAGTATCTTCTTCTTCTGAA
JMFF006F24+           CCCAGTACAATCACATCATACTCTTCATCCATTACTCTTTCAGTATCTTCTTCTTCTGAA
JMSF041M03+           CCCAGTACAATCACATCATACTCTTCATCCATTACTCTTTCAGTATCTTCTTCTTCTGAA
JMFS030E07+           CCCAGTACAATCACATCATACTCTTCATCCATTACTCTTTCAGTATCTTCTTCTTCTGAA
rJMFF008E02-          CCCAGTACAATCACATCATACTCTTCATCCATTACTCTTTCAGTATCTTCTTCTTCTGAA
JMSF023E01+           CCCAGTACAATCACATCATACTCTTCATCCATTACTCTTTCAGTATCTTCTTCTTCTGAA
                      ____________________________________________________________
consensus             CCCAGTACAATCACATCATACTCTTCATCCATTACTCTTTCAGTATCTTCTTCTTCTGAA
 
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JMFF044D14+           GATTAAAAGTCAA                                               
JMFF006F24+           GATTAAAAGTCAA                                               
JMSF041M03+           GATTAAAAGTCAACTGAAACAGACGAATAAGATCAAACTAGGGTAATAG           
JMFS030E07+           GATTAAAAGTCAACTGAAACAGACGAATAAGATCAAACTAGGGTAATAGTAGAGCGTTGA
rJMFF008E02-          GATTAAAAGTCAACTGAAACAGACGAATAAGATCAAACTAGGGTAATAGT          
JMSF023E01+           GATTAAAAGTCAACTGAAACAGACGAATAAGATCAAACTAGGGTAATAGTAGAGCGTTGA
                      ____________________________________________________________
consensus             GATTAAAAGTCAACTGAAACAGACGAATAAGATCAAACTAGGGTAATAGTAGAGCGTTGA
 
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JMFS030E07+           ACTTAGGTGTGGATATATATAGAGAGAGGAAGATAGGGTGAGAAGACAG           
JMSF023E01+           ACTTAGGTGTGGATATATATAGAGAGAGGAAGATAGGGTGAGAAGACAGAAGAGATCGAG
                      ____________________________________________________________
consensus             ACTTAGGTGTGGATATATATAGAGAGAGGAAGATAGGGTGAGAAGACAGAAGAGATCGAG
 
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JMSF023E01+           TTTACTTGTGTTGGGAGCTTTGATCGGCGGCGAGAGAGAAAAATGGATCGAATGTTTTTC
                      ____________________________________________________________
consensus             TTTACTTGTGTTGGGAGCTTTGATCGGCGGCGAGAGAGAAAAATGGATCGAATGTTTTTC