Contig 006503:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF009L24Sequence431006503 (11)ref|XP_009601532.1|6e-53PREDICTED: auxin efflux carrier component 3-like isoform X1 [Nicotiana tomentos713009632 (4)gb|AIF28348.1|3e-31PIN-like protein, partial [Strelitzia reginae]
JMFS011D02Sequence626006503 (11)ref|XP_009601532.1|9e-108PREDICTED: auxin efflux carrier component 3-like isoform X1 [Nicotiana tomentos
JMFS016C09Sequence613006503 (11)ref|XP_009601532.1|6e-105PREDICTED: auxin efflux carrier component 3-like isoform X1 [Nicotiana tomentos
JMFS095C12Sequence613006503 (11)ref|XP_009601532.1|6e-105PREDICTED: auxin efflux carrier component 3-like isoform X1 [Nicotiana tomentos
JMFS102D06Sequence621006503 (11)ref|XP_009761335.1|1e-107PREDICTED: auxin efflux carrier component 3-like isoform X1 [Nicotiana sylvestr
JMFS119A10Sequence619006503 (11)ref|XP_009601533.1|5e-106PREDICTED: auxin efflux carrier component 3-like isoform X2 [Nicotiana tomentos
JMFS150G02Sequence585006503 (11)gb|AGG79243.1|4e-102auxin efflux facilitator PIN3b [Nicotiana tabacum]
JMSF005M15Sequence226006503 (11)ref|XP_009601548.1|6e-07PREDICTED: auxin efflux carrier component 7-like [Nicotiana tomentosiformis] gb|
JMSF015G02Sequence232006503 (11)ref|NP_564189.1|6e-08auxin efflux carrier component 7 [Arabidopsis thaliana] gb|AAK96547.1| At1g23080732009632 (4)ref|XP_002530487.1|8e-43hypothetical protein RCOM_0566910 [Ricinus communis] gb|EEF31910.1| hypothetical
JMSF017E02Sequence237006503 (11)ref|XP_009601548.1|4e-10PREDICTED: auxin efflux carrier component 7-like [Nicotiana tomentosiformis] gb|674009632 (4)gb|AIF28348.1|3e-49PIN-like protein, partial [Strelitzia reginae]
JMSF021K08Sequence676006503 (11)gb|AGG79243.1|8e-112auxin efflux facilitator PIN3b [Nicotiana tabacum]720009632 (4)ref|XP_002530487.1|9e-42hypothetical protein RCOM_0566910 [Ricinus communis] gb|EEF31910.1| hypothetical

Alignment

This contig is upended


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JMSF021K08+                                                       AAACGACACAATCGAC
                      ____________________________________________________________
consensus                                                         AAACGACACAATCGAC
 
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JMFS119A10+                            CTGTTCCATAATCAGCATCTTGGCGCCGCGATACTCGAACAGA
JMFS016C09+                               TTCCATAATCAGCATCTTGGCGCCGCGATACTCGAACAGA
JMFS095C12+                             TGTTCCATAATCAGCATCTTGGCGCCGCGATACTCGAACAGA
JMFS150G02+                                      ATCAGCATCTGGGCGCCGCGATACTCGAACAGA
JMFS011D02+                      CGGGAACTGTTCCATAATCAGCATCTTGGCGCCGCGATACTCGAACAGA
JMFS102D06+                     CCGGGAACTGTTCCATAATCAGCATCTTGGCGCCGCGATACTCGAACAGA
JMSF021K08+           GCCGCCGTCTCCGGGAACTGTTCCATAATCAGCATCTTGGCGCCGCGATACTCGAACAGA
                      ____________________________________________________________
consensus             GCCGCCGTCTCCGGGAACTGTTCCATAATCAGCATCTTGGCGCCGCGATACTCGAACAGA
 
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JMFS119A10+           AAAAGCAGCAGAGTATACCAAATAATGCACTGAAGTACAACCACCTGAACCATCAGGCTG
JMFS016C09+           AAAAGCAGCAGAGTATACCAAATAATGCACTGAAGTACAACCACCTGAACCATCAGGCTG
JMFS095C12+           AAAAGCAGCAGAGTATACCAAATAATGCACTGAAGTACAACCACCTGAACCATCAGGCTG
JMFS150G02+           AAAAGCAGCAGAGTATACCAAATAATGCACTGAAGTACAACCACCTGAACCATCAGGCTG
JMFS011D02+           AAAAGCAGCAGAGTATACCAAATAATGCACTGAAGTACAACCACCTGAACCATCAGGCTG
JMFS102D06+           AAAAGCAGCAGAGTATACCAAATAATGCACTGAAGTACAACCACCTGAACCATCAGGCTG
JMSF021K08+           AAAAGCAGCAGAGTATACCAAATAATGCACTGAAGTACAACCACCTGAACCATCAGGCTG
                      ____________________________________________________________
consensus             AAAAGCAGCAGAGTATACCAAATAATGCACTGAAGTACAACCACCTGAACCATCAGGCTG
 
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JMFS119A10+           CCGGAATATTCCCCGTACATGGCAATCAGCAACGGAATCCCCATCACCAGAGTGTTCGGC
JMFS016C09+           CCGGAATATTCCCCGTACATGGCAATCAGCAACGGAATCCCCATCACCAGAGTGTTCGGC
JMFS095C12+           CCGGAATATTCCCCGTACATGGCAATCAGCAACGGAATCCCCATCACCAGAGTGTTCGGC
JMFS150G02+           CCGGAATATTCCCCGTACATGGCAATCAGCAACGGAATCCCCATCACCAGAGTGTTCGGC
JMFS011D02+           CCGGAATATTCCCCGTACATGGCAATCAGCAACGGAATCCCCATCACCAGAGTGTTCGGC
JMFS102D06+           CCGGAATATTCCCCGTACATGGCAATCAGCAACGGAATCCCCATCACCAGAGTGTTCGGC
JMSF021K08+           CCGGAATATTCCCCGTACATGGCAATCAGCAACGGAATCCCCATCACCAGAGTGTTCGGC
                      ____________________________________________________________
consensus             CCGGAATATTCCCCGTACATGGCAATCAGCAACGGAATCCCCATCACCAGAGTGTTCGGC
 
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JMFS119A10+           AACGTCGAGAGGGAAAAGATGGTAATACTCCATTCCAGGCTGCCATTTTTGCTCAAATTC
JMFS016C09+           AACGTCGAGAGGGAAAAGATGGTAATACTCCATTCCAGGCTGCCATTTTTGCTCAAATTC
JMFS095C12+           AACGTCGAGAGGGAAAAGATGGTAATACTCCATTCCAGGCTGCCATTTTTGCTCAAATTC
JMFS150G02+           AACGTCGAGAGGGAAAAGATGGTAATACTCCATTCCAGGCTGCCATTTTTGCTCAAATTC
JMFS011D02+           AACGTCGAGAGGGAAAAGATGGTAATACTCCATTCCAGGCTGCCATTTTTGCTCAAATTC
JMFS102D06+           AACGTCGAGAGGGAAAAGATGGTAATACTCCATTCCAGGCTGCCATTTTTGCTCAAATTC
JMFF009L24+                                                          TTTGCTCAAATTC
JMSF021K08+           AACGTCGAGAGGGAAAAGATGGTAATACTCCATTCCAGGCTGCCATTTTTGCTCAAATTC
                      ____________________________________________________________
consensus             AACGTCGAGAGGGAAAAGATGGTAATACTCCATTCCAGGCTGCCATTTTTGCTCAAATTC
 
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JMFS119A10+           GCCCAGAAACAGAGCACCACGAGCATGATGATCTTCTGGAGGGTATCGGCGGCGATGAAC
JMFS016C09+           GCCCAGAAACAGAGCACCACGAGCATGATGATCTTCTGGAGGGTATCGGCGGCGATGAAC
JMFS095C12+           GCCCAGAAACAGAGCACCACGAGCATGATGATCTTCTGGAGGGTATCGGCGGCGATGAAC
JMFS150G02+           GCCCAGAAACAGAGCACCACGAGCATGATGATCTTCTGGAGGGTATCGGCGGCGATGAAC
JMFS011D02+           GCCCAGAAACAGAGCACCACGAGCATGATGATCTTCTGGAGGGTATCGGCGGCGATGAAC
JMFS102D06+           GCCCAGAAACAGAGCACCACGAGCATGATGATCTTCTGGAGGGTATCGGCGGCGATGAAC
JMFF009L24+           GCCCAGAAACAGAGCACCACGAGCATGATGATCTTCTGGAGGGTATCGGCGGCGATGAAC
JMSF021K08+           GCCCAGAAACAGAGCACCACGAGCATGATGATCTTCTGGAGGGTATCGGCGGCGATGAAC
                      ____________________________________________________________
consensus             GCCCAGAAACAGAGCACCACGAGCATGATGATCTTCTGGAGGGTATCGGCGGCGATGAAC
 
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JMFS119A10+           CGGAGATTCATCTCGTACGGATTGTTACTGGAGATAAAGTGGAAGGACAGTAAAGGGACG
JMFS016C09+           CGGAGATTCATCTCGTACGGATTGTTACTGGAGATAAAGTGGAAGGACAGTAAAGGGACG
JMFS095C12+           CGGAGATTCATCTCGTACGGATTGTTACTGGAGATAAAGTGGAAGGACAGTAAAGGGACG
JMFS150G02+           CGGAGATTCATCTCGTACGGATTGTTACTGGAGATAAAGTGGAAGGACAGTAAAGGGACG
JMFS011D02+           CGGAGATTCATCTCGTACGGATTGTTACTGGAGATAAAGTGGAAGGACAGTAAAGGGACG
JMFS102D06+           CGGAGATTCATCTCGTACGGATTGTTACTGGAGATAAAGTGGAAGGACAGTAAAGGGACG
JMFF009L24+           CGGAGATTCATCTCGTACGGATTGTTACTGGAGATAAAGTGGAAGGACAGTAAAGGGACG
JMSF021K08+           CGGAGATTCATCTCGTACGGATTGTTACTGGAGATAAAGTGGAAGGACAGTAAAGGGACG
                      ____________________________________________________________
consensus             CGGAGATTCATCTCGTACGGATTGTTACTGGAGATAAAGTGGAAGGACAGTAAAGGGACG
 
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JMFS119A10+           GCGAAAATGGCGACGAAGCGGTTGATCCCGGAGCACTGGTCGGGGGTGAAGATCTTCCAC
JMFS016C09+           GCGAAAATGGCGACGAAGCGGTTGATCCCGGAGCACTGGTCGGGGGTGAAGATCTTCCAC
JMFS095C12+           GCGAAAATGGCGACGAAGCGGTTGATCCCGGAGCACTGGTCGGGGGTGAAGATCTTCCAC
JMFS150G02+           GCGAAAATGGCGACGAAGCGGTTGATCCCGGAGCACTGGTCGGGGGTGAAGATCTTCCAC
JMFS011D02+           GCGAAAATGGCGACGAAGCGGTTGATCCCGGAGCACTGGTCGGGGGTGAAGATCTTCCAC
JMFS102D06+           GCGAAAATGGCGACGAAGCGGTTGATCCCGGAGCACTGGTCGGGGGTGAAGATCTTCCAC
JMFF009L24+           GCGAAAATGGCGACGAAGCGGTTGATCCCGGAGCACTGGTCGGGGGTGAAGATCTTCCAC
JMSF017E02+                                                                     AC
JMSF021K08+           GCGAAAATGGCGACGAAGCGGTTGATCCCGGAGCACTGGTCGGGGGTGAAGATCTTCCAC
                      ____________________________________________________________
consensus             GCGAAAATGGCGACGAAGCGGTTGATCCCGGAGCACTGGTCGGGGGTGAAGATCTTCCAC
 
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JMFS119A10+           CACCGCACGGAGCCGTAGGCCAATATCATTGCCACGTAAAGCGGGACCACCGCCGTTAAG
JMFS016C09+           CACCGCACGGAGCCGTAGGCCAATATCATTGCCACGTAAAGCGGGACCACCGCCGTTAAG
JMFS095C12+           CACCGCACGGAGCCGTAGGCCAATATCATTGCCACGTAAAGCGGGACCACCGCCGTTAAG
JMFS150G02+           CACCGCACGGAGCCGTAGGCCAATATCATTGCCACGTAAAGCGGGACCACCGCCGTTAAG
JMFS011D02+           CACCGCACGGAGCCGTAGGCCAATATCATTGCCACGTAAAGCGGGACCACCGCCGTTAAG
JMFS102D06+           CACCGCACGGAGCCGTAGGCCAATATCATTGCCACGTAAAGCGGGACCACCGCCGTTAAG
JMFF009L24+           CACCGCACGGAGCCGTAGGCCAATATCATTGCCACGTAAAGCGGGACCNCCGCCGTTAAG
JMSF015G02+              CGCACGGAGCCGTAGGCCAATATCATTGCCACGTAAAGCGGGACCACCGCCGTTAAG
JMSF017E02+           CACCGCACGGAGCCGTAGGCCAATATCATTGCCACGTAAAGCGGGACCACCGCCGTTAAG
JMSF005M15+                    GAGCCGTAGGCCAATATCATTGCCACGTAAAGCGGGACCACCGCCGTTAAG
JMSF021K08+           CACCGCACGGAGCCGTAGGCCAATATCATTGCCACGTAAAGCGGGACCACCGCCGTTAAG
                      ____________________________________________________________
consensus             CACCGCACGGAGCCGTAGGCCAATATCATTGCCACGTAAAGCGGGACCACCGCCGTTAAG
 
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JMFS119A10+           ACCACGTAAAGATCATGCCAAGTAATCATTTTTCTTGGTTTTCCGGCGAGGAAAGCTAGA
JMFS016C09+           ACCACGTAAAGATCATGCCAAGTAATCATTTTTCTTGGTTTTCCGGCGAGGAAAGCTAGA
JMFS095C12+           ACCACGTAAAGATCATGCCAAGTAATCATTTTTCTTGGTTTTCCGGCGAGGAAAGCTAGA
JMFS150G02+           ACCACGTAAAGATCATGCCAAGTAATCATTTTTCTTGGTTTTCCGGCGAGGAAAGCTAGA
JMFS011D02+           ACCACGTAAAGATCATGCCAAGTAATCATTTTTCTTGGTTTTCCGGCGAGGAAAGCTAGA
JMFS102D06+           ACCACGTAAAGATCATGCCAAGTAATCATTTTTCTTGGTTTTCCGGCGAGGAAAGCTAGA
JMFF009L24+           ACCACGTAAAGATCATGCCAAGTAATCATTTTTCTTGGTTTTCCGGCGAGGAAAGCTAGA
JMSF015G02+           ACCACGTAAAGATCATGCCAAGTAATCATTTTTCTTGGTTTTCCGGCGAGGAAAGCTAGA
JMSF017E02+           ACCACGTAAAGATCATGCCAAGTAATCATTTTTCTTGGTTTTCCGGCGAGGAAAGCTAGA
JMSF005M15+           ACCACGTAAAGATCATGCCAAGTAATCATTTTTCTTGGTTTTCCGGCGAGGAAAGCTAGA
JMSF021K08+           ACCACGTAAAGATCATGCCAAGTAATCATTTTTCTTGGTTTTCCGGCGAGGAAAGCTAGA
                      ____________________________________________________________
consensus             ACCACGTAAAGATCATGCCAAGTAATCATTTTTCTTGGTTTTCCGGCGAGGAAAGCTAGA
 
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JMFS119A10+           ATGGGAGAAAAAGAAGAAGAAGAAAGTATTTATGAAGTGTAAAGAGCTAGTGAGACTTGA
JMFS016C09+           ATGGGAGAAAAAGAAGAAGAAGAAAGTATTTATGAAGTGTAAAGAGCTAGTGAGACTTGA
JMFS095C12+           ATGGGAGAAAAAGAAGAAGAAGAAAGTATTTATGAAGTGTAAAGAGCTAGTGAGACTTGA
JMFS150G02+           ATGGGAGAAAAAGAAGAAGAAGAAAGTATTTATGAAGTGTAAAGAGCTAGTGAGAC    
JMFS011D02+           ATGGGAGAAAAAGAAGAAGAAGAAAGTATTTATGAAGTGTAAAGAGCTAGTGAGACTTGA
JMFS102D06+           ATGGGAGAAAAAGAAGAAGAAGAAAGTATTTATGAAGTGTAAAGAGCTAGTGAGACTTGA
JMFF009L24+           ATGGGAGAAAAAGAAGAAGAAGAAAGTATTTATGAAGTGTAAAGAGCTAGTGAGACTTGA
JMSF015G02+           ATGGGAGAAAAAGAAGAAGAAGAAAGTATTTATGAAGTGTAAAGAGCTAGTGAGACTTGA
JMSF017E02+           ATGGGAGAAAAAGAAGAAGAAGAAAGTATTTATGAAGTGTAAAGAGCTAGTGAGACTTGA
JMSF005M15+           ATGGGAGAAAAAGAAGAAGAAGAAAGTATTTATGAAGTGTAAAGAGCTAGTGAGACTTGA
JMSF021K08+           ATGGGAGAAAAAGAAGAAGAAGAAAGTATTTATGAAGTGTAAAGAGCTAGTGAGACTTGA
                      ____________________________________________________________
consensus             ATGGGAGAAAAAGAAGAAGAAGAAAGTATTTATGAAGTGTAAAGAGCTAGTGAGACTTGA
 
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JMFS119A10+           AATTGGAGTGGGATTGGGGAAGAGAGAGAGAGAGAG                        
JMFS016C09+           AATTGGAGTGGGATTGGGGAAGAGAGAGAGAGA                           
JMFS095C12+           AATTGGAGTGGGATTGGGGAAGAGAGAGAGA                             
JMFS011D02+           AATTGGAGTGGGATTGGGGAAGAGAGAGAGAGAGAGA                       
JMFS102D06+           AATTGGAGTGGGATTGGGGAAGAGAGAGAGA                             
JMFF009L24+           AATTGGAGTGGGATTGGGGAAGAGAGAGAGAGAGAGAGTGAAGAAAGAGAGATT      
JMSF015G02+           AATTGGAGTGGGATTGGGGAAGAGAGAGAGAGAGAGAGTGAAGAAAGAGAGATT      
JMSF017E02+           AATTGGAGTGGGATTGGGGAAGAGAGAGAGAGAGAGAGTGAAGAAAGAGAGATT      
JMSF005M15+           AATTGGAGTGGGATTGGGGAAGAGAGAGAGAGAGAGAGTGAAGAAAGAGAGATT      
JMSF021K08+           AATTGGAGTGGGATTGGGGAAGAGAGAGAGAGAGAGAGTGAAGAAAGAGAGATTAGTTCC
                      ____________________________________________________________
consensus             AATTGGAGTGGGATTGGGGAAGAGAGAGAGAGAGAGAGTGAAGAAAGAGAGATTAGTTCC