| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF004K10 | Sequence | 596 | 001596 (3) | ref|XP_010060738.1| | 1e-110 | PREDICTED: protein transport protein Sec61 subunit alpha-like [Eucalyptus grand | 717 | 006502 (6) | emb|CDO96861.1| | 3e-113 | unnamed protein product [Coffea canephora] |
| JMFF009K21 | Sequence | 576 | 001596 (3) | ref|XP_010060738.1| | 1e-95 | PREDICTED: protein transport protein Sec61 subunit alpha-like [Eucalyptus grand | 683 | 006502 (6) | emb|CDO96861.1| | 5e-107 | unnamed protein product [Coffea canephora] |
| JMFN036F16 | Sequence | 538 | 006502 (6) | ref|XP_010911507.1| | 5e-62 | PREDICTED: protein transport protein Sec61 subunit alpha-like [Elaeis guineensi | |||||
| JMSF021I21 | Sequence | 119 | 006502 (6) | ||||||||
| JMSF022F15 | Sequence | 566 | 009481 (5) | ref|XP_011073026.1| | 9e-112 | PREDICTED: uncharacterized protein LOC105158090 isoform X2 [Sesamum indicum] | 459 | 006502 (6) | ref|XP_010911507.1| | 1e-54 | PREDICTED: protein transport protein Sec61 subunit alpha-like [Elaeis guineensi |
| JMSF036K19 | Sequence | 683 | 001596 (3) | ref|XP_010060738.1| | 4e-127 | PREDICTED: protein transport protein Sec61 subunit alpha-like [Eucalyptus grand | 700 | 006502 (6) | emb|CDO96861.1| | 4e-87 | unnamed protein product [Coffea canephora] |
This contig is upended
. : . : . : . : . : . :
rJMSF036K19+ ATCCAACCTGTACTTCATTTCTCAGTTACTGTACCGGAAG
rJMFF009K21+ CTCAGTTACTGTACCGGAAG
rJMFF004K10+ AACCTGTACTTCATTTCTCAGTTACTGTACCGGAAG
____________________________________________________________
consensus ATCCAACCTGTACTTCATTTCTCAGTTACTGTACCGGAAG
. : . : . : . : . : . :
rJMSF036K19+ TACAGTGGAAACTTCTTCGTCAATTTGTTGGGCATATGGAAGGAATCTGAATACTCAGGC
rJMFF009K21+ TACAGTGGAAACTTCTTCGTCAATTTGTTGGGCATATGGAAGGAATNTGAATACTCAGGC
rJMFF004K10+ TACAGTGGAAACTTCTTCGTCAATTTGTTGGGCATATGGAAGGAATCTGAATACTCAGGC
____________________________________________________________
consensus TACAGTGGAAACTTCTTCGTCAATTTGTTGGGCATATGGAAGGAATCTGAATACTCAGGC
. : . : . : . : . : . :
rJMSF036K19+ CAGTCTGTTCCTGTTGGTGGACTTGCTTATTATGTTACTGCGCCATCAAGCCTGGCAGAC
rJMFF009K21+ CAGTCTGTTCCTGTTGGTGGACTTGCTTATTATGTTACTGCGCCATCAAGCCTGGCAGAC
rJMFF004K10+ CAGTCTGTTCCTGTTGGTGGACTTGCTTATTATGTTACTGCGCCATCAAGCCTGGCAGAC
____________________________________________________________
consensus CAGTCTGTTCCTGTTGGTGGACTTGCTTATTATGTTACTGCGCCATCAAGCCTGGCAGAC
. : . : . : . : . : . :
rJMSF036K19+ ATGTTGACTCATCCATTCCATGCTCTTTTTCTACATAGTATTCATGCTTTCTGCTTGTGC
rJMFF009K21+ ATGTTGACTCATCCATTCCGTGCTC-TTTTCTACATAGTATTCATGCTTTCTGCTTGTGC
rJMFF004K10+ ATGATGACTCATCCATTCCATGCTC-TTTTCTACATAGTATTCATGCTTTCTGCTTGTGC
JMFN036F16- TGCTTGTTC
____________________________________________________________
consensus ATGTTGACTCATCCATTCCATGCTC-TTTTCTACATAGTATTCATGCTTTCTGCTTGTGC
. : . : . : . : . : . :
rJMSF036K19+ ACTGTTCTCGAAGACATGGATTGAAGTTTCAGGGTCCTCAGCTAAAGATGTTGCCAAGCA
rJMFF009K21+ ACTGTTCTCGAAGACATGGATTGAAGTTTCAGGGTCCTCAGCTAAAGATGTTGCCAAGCA
rJMSF022F15+ CTGTTCTCGAAGACATGGNTNGAAGTTTCAGGGTCNTCANCTAAAGATGTTGCCAAGCA
rJMFF004K10+ ACTGTTCTCGAAGACATGGATTGAAGTTTCAGGGTCCTCAGCTAAAGATGTTGCCAAGCA
JMFN036F16- ACTGTTCTCGAAGACATGGATTGAAGTTTCAGGGTCCTCAGCTAAAGATGTTGCCAAGCA
____________________________________________________________
consensus ACTGTTCTCGAAGACATGGATTGAAGTTTCAGGGTCCTCAGCTAAAGATGTTGCCAAGCA
. : . : . : . : . : . :
rJMSF036K19+ GCTTAAGGAGCAACAAATGGTGATGCCTGGACATCGCGACTCTAATCTGCAGAAGGAATT
rJMFF009K21+ GCTTAAGGAGCAACAAATGGTGATGCCTGGACATCGCGACTCTAATCTGCAGAAGGAATT
rJMSF022F15+ GCTTAAGGAGCAACAAATGGTGATGCCNGGACATCGCGACTCTAATCNGCAGAAGGAATT
rJMFF004K10+ GCTTAAGGAGCAACAAATGGTGATGCCTGGACATCGCGACTCTAATCTGCAGAAGGAATT
JMFN036F16- GCTTAAGGAGCAACAAATGGTGATGCCTGGACATCGCGACTCTAATCTGGGGGGGGAATT
____________________________________________________________
consensus GCTTAAGGAGCAACAAATGGTGATGCCTGGACATCGCGACTCTAATCTGCAGAAGGAATT
. : . : . : . : . : . :
rJMSF036K19+ GAATCGCTACATTCCCACTGCAGCTGCTTTTGGAGGAATGTGCATTGGCGCATTGACAGT
rJMFF009K21+ GAATCGCTACATTCCCACTGCAGCTGCTTTTGGAGGAATGTGCATTGGCGCATTGACAGT
rJMSF022F15+ GAATCGNTACATTCCCACTGCAGCTGCTTTTGGAGGAATGTGCATTGGCGCATTGACAGT
rJMFF004K10+ GAATCGCTACATTCCCACTGCAGCTGCTTTTGGAGGAATGTGCATTGGCGCATTGACAGT
JMFN036F16- GAATCGCTACATTCCCACTGCAGCTGCTTTTGGAGGAATGTGCATTGGCGCATTGACAGT
____________________________________________________________
consensus GAATCGCTACATTCCCACTGCAGCTGCTTTTGGAGGAATGTGCATTGGCGCATTGACAGT
. : . : . : . : . : . :
rJMSF036K19+ GTTAGCAGACATGATGGGCGCTATTGGATCGGGAACTGGAATTCTTCTTGCAGTTACCAT
rJMFF009K21+ GTTAGCAGACATGATGGGCGCTATTGGATCGGGAACTGGAATTCTTCTTGCAGTTACCAT
rJMSF022F15+ GNTAGCAGACATGATGGGCGCTATTGGATCGGGAACNGGAATTCTTCTTGCAGTTACCAT
rJMFF004K10+ GTTAGCAGACATGATGGGCGCTATTGGATCGGGAACTGGAATTCTTCTTGCAGTTACCAT
JMFN036F16- GTTAGCAGACATGATGGGCGCTATTGGATCGGGAACTGGAATTCTTCTTGCAGTTACCAT
____________________________________________________________
consensus GTTAGCAGACATGATGGGCGCTATTGGATCGGGAACTGGAATTCTTCTTGCAGTTACCAT
. : . : . : . : . : . :
rJMSF036K19+ CATCTATCAGTATTTCGAGACATTCGAGAAAGAGAAAGCCACTGAACTAGGTTTCTTGGG
rJMFF009K21+ CATCTATCAGTATTTCGAGACATTCGAGAAAGAGAAAGCCACTGAACTAGGTTTCTTGGG
rJMSF022F15+ CATCTATCAGTATTTCGAGACATTCGAGAAAGAGAAAGCCACTGAACTAGGTTTCTTGGG
rJMFF004K10+ CATCTATCAGTATTTCGAGACATTCGAGAAAGAGAAAGCCACTGAACTAGGTTTCTTGGG
JMFN036F16- CATCTATCAGTATTTCGAGACATTCGAGAAAGAGAAAGCCACTGAACTAGGTTTCTTGGG
____________________________________________________________
consensus CATCTATCAGTATTTCGAGACATTCGAGAAAGAGAAAGCCACTGAACTAGGTTTCTTGGG
. : . : . : . : . : . :
rJMSF036K19+ CTTGTGAGAGACAGACGGACGGACAGACAGGGTTGTAGAAAATCTGTTAGCACGCGACTG
rJMFF009K21+ CTTGTGAGAGACAGACGGACGGACAGACAGGGTTGTAGAAAATCTGTTAGCACGCGACTG
rJMSF022F15+ CTTGTGAGAGACAGNCGGACGGACAGACAGGGTTGTAGAAAATCTGTTAGCACGCGACTG
rJMFF004K10+ CTTGTGAGAGACAGACGGACGGACAGACAGGGTTGTAGAAAATCTGTTAGCACGCGACTG
JMFN036F16- CTTGTGAGAGACAGACGGACGGACAGACAGGGTTGTAGAAAATCTGTTAGCACGCCACTG
____________________________________________________________
consensus CTTGTGAGAGACAGACGGACGGACAGACAGGGTTGTAGAAAATCTGTTAGCACGCGACTG
. : . : . : . : . : . :
rJMSF036K19+ AATATGGATAGAGAGATCAAGCCTTCACTTACCTCAATGTAATGTACCTTGTATTTT-CA
rJMFF009K21+ AATATGGATAGAGAGATCAAGCCTTCACTTACCTCAATGTAATGTACCTTGTATTTT-CA
rJMSF022F15+ AATATGGATAGAGAGATCAAGCCTTCACTTACCTCAATGTAATGTACCTTGTATTTTCCA
rJMFF004K10+ AATATGGATAGAGAGATCAAGCCTTCACTTACCTCAATGTAATGTACCTTGTATTTT-CA
JMFN036F16- AATATGGATAGAGAGATCAAGCCTTCACTTACCTCAATGTAATGTACCTTGTATTTT-CA
____________________________________________________________
consensus AATATGGATAGAGAGATCAAGCCTTCACTTACCTCAATGTAATGTACCTTGTATTTT-CA
. : . : . : . : . : . :
rJMSF036K19+ TGTTATGTTTTTCCTCCCTTGTCAAACCTAGCTAGCTATGATGTTCCAAAAACTACTGAC
rJMFF009K21+ TGTTATGTTTTTCCTCCCTTGTCAAACCTAGCTAGCTATGATGTTCCAAAAACTACTGAC
rJMSF022F15+ TGTTATGTTTTTCCTCCCTTGTCAAACCTAGCTAGCTA
rJMFF004K10+ TGTTATGTTTTTCCTCCCTTGTCAAACCTAGCTAGCTATGATGTTCCAAAAACTACTGAC
JMFN036F16- TGTTATGTTTTTCCTCCCTTGTCAAACCTAGCTAGCTATGATGTTCCAAAAACTACTGAC
JMSF021I21- GTTATGTTTTTCCTCCCTTGTCAAACCTAGCTAGCTATGATGTTCCAAAAACTACTGAC
____________________________________________________________
consensus TGTTATGTTTTTCCTCCCTTGTCAAACCTAGCTAGCTATGATGTTCCAAAAACTACTGAC
. : . : . : . : . : . :
rJMSF036K19+ A
rJMFF009K21+ ATAAA
rJMFF004K10+ ATAAATTTTGCCAAATT
JMFN036F16- ATAAATTTTGCCAAATTTCAAAAATGTGTCATTTTGTTCTTTGNTTTTTT
JMSF021I21- ATAAATTTTGCCAAATTTCAAAAATGTGTCATTTTGTTCTTTGTTTTTTTAAAAAAAAAA
____________________________________________________________
consensus ATAAATTTTGCCAAATTTCAAAAATGTGTCATTTTGTTCTTTGTTTTTTTAAAAAAAAAA