| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFN040H04 | Sequence | 624 | 006493 (7) | ref|XP_010324228.1| | 8e-66 | PREDICTED: KH domain-containing protein At5g56140 isoform X4 [Solanum lycopersi | |||||
| JMSF020I08 | Sequence | 653 | 006493 (7) | ref|XP_009620233.1| | 2e-70 | PREDICTED: KH domain-containing protein At5g56140 isoform X2 [Nicotiana tomento | 728 | 006493 (7) | ref|XP_011095628.1| | 4e-76 | PREDICTED: KH domain-containing protein At5g56140-like isoform X2 [Sesamum indi |
| JMSF040O02 | Sequence | 656 | 006493 (7) | ref|XP_009620233.1| | 1e-70 | PREDICTED: KH domain-containing protein At5g56140 isoform X2 [Nicotiana tomento | 871 | 006493 (7) | ref|XP_011095628.1| | 1e-92 | PREDICTED: KH domain-containing protein At5g56140-like isoform X2 [Sesamum indi |
| JMSF044P12 | Sequence | 691 | 006493 (7) | ref|XP_009620233.1| | 5e-91 | PREDICTED: KH domain-containing protein At5g56140 isoform X2 [Nicotiana tomento | 600 | 006493 (7) | emb|CDP13650.1| | 4e-33 | unnamed protein product [Coffea canephora] |
This contig is upended
. : . : . : . : . : . :
rJMSF044P12- AAACCCACAACCAGTGTTTGGTG
rJMSF020I08- TGGTG
rJMSF040O02- AAACCCACAACCAGTGTTTGGTG
____________________________________________________________
consensus AAACCCACAACCAGTGTTTGGTG
. : . : . : . : . : . :
rJMSF044P12- GATTGTTTTCAGAATCCATATACAATGCATAATAACCTTACTACTAATAGGAATCCCATC
rJMSF020I08- GATTGTTTTCAGAATCCATATACAATGCATAATAACCTTACTACTAATAGGAATCCCATC
rJMSF040O02- GATTGTTTTCAGAATCCATATACAATGCATAATAACCTTACTACTAATAGGAATCCCATC
____________________________________________________________
consensus GATTGTTTTCAGAATCCATATACAATGCATAATAACCTTACTACTAATAGGAATCCCATC
. : . : . : . : . : . :
rJMSF044P12- ATCAAAACTAGTTGCATACTTAACAGATGCATTGGAAAGACACTAGCCTAAACAAACTAT
rJMSF020I08- ATCAAAACTAGTTGCATACTTAACAGATGCATTGGAAAGACACTAGCCTAAACAAACTAT
rJMSF040O02- ATCAAAACTAGTTGCATACTTAACAGATGCATTGGAAAGACACTAGCCTAAACAAACTAT
____________________________________________________________
consensus ATCAAAACTAGTTGCATACTTAACAGATGCATTGGAAAGACACTAGCCTAAACAAACTAT
. : . : . : . : . : . :
rJMSF044P12- CTAGAGCACATCAACCAACCCTGCAACACACTGTCATACTATGTTCTTCTTGCTAAATCG
rJMSF020I08- CTAGAGCACATCAACCAACCCTGCAACACACTGTCATACTATGTTCTTCTTGCTAAATCG
rJMSF040O02- CTAGAGCACATCAACCAACCCTGCAACACACTGTCATACTATGTTCTTCTTGCTAAATCG
____________________________________________________________
consensus CTAGAGCACATCAACCAACCCTGCAACACACTGTCATACTATGTTCTTCTTGCTAAATCG
. : . : . : . : . : . :
rJMSF044P12- ATCCCCAAGCAAACATAAACACACCGCATATCACATGCAAACCGGCATGTAACAGTGCCA
rJMSF020I08- ATCCCCAAGCAAACATAAACACACCGCATATCACATGCAAACCGGCATGTAACAGTGCCA
rJMSF040O02- ATCCCCAAGCAAACATAAACACACCGCATATCACATGCAAACCGGCATGTAACAGTGCCA
____________________________________________________________
consensus ATCCCCAAGCAAACATAAACACACCGCATATCACATGCAAACCGGCATGTAACAGTGCCA
. : . : . : . : . : . :
rJMSF044P12- GTGCCCCGACGGCATTGGATGTGTAGCCTGGACAGCAACTACTAGTTGCATCCGAGATTC
rJMSF020I08- GTGCCCCGACGGCATTGGATGTGTAGCCTGGACAGCAACTACTAGTTGCATCCGAGATTC
rJMSF040O02- GTGCCCCGACGGCATTGGATGTGTAGCCTGGACAGCAACTACTAGTTGCATCCGAGATTC
____________________________________________________________
consensus GTGCCCCGACGGCATTGGATGTGTAGCCTGGACAGCAACTACTAGTTGCATCCGAGATTC
. : . : . : . : . : . :
rJMSF044P12- GGCTCAGTAGTAGCTCAAATGGAAGCCCACTAAGAAAACTGATTACCCCCTTGTCTTGGC
rJMSF020I08- GGCTCAGTAGTAGCTCAAATGGAAGCCCACTAAGAAAACTGATTACCCCCTTGTCTTGGC
rJMSF040O02- GGCTCAGTAGTAGCTCAAATGGAAGCCCACTAAGAAAACTGATTACCCCCTTGTCTTGGC
____________________________________________________________
consensus GGCTCAGTAGTAGCTCAAATGGAAGCCCACTAAGAAAACTGATTACCCCCTTGTCTTGGC
. : . : . : . : . : . :
rJMSF044P12- CCTCTTCATCCCAAGGCTGTTGTTGAAGGGGGAAACAGAACCAGACATTTGAGAACCTTC
rJMSF020I08- CCTCTTCATCCCAAGGCTGTTGTTGAAGGGGGAAACAGAACCAGACATTTGAGAACCTTC
rJMSF040O02- CCTCTTCATCCCAAGGCTGTTGTTGAAGGGGGAAACAGAACCAGACATTTGAGAACCTTC
____________________________________________________________
consensus CCTCTTCATCCCAAGGCTGTTGTTGAAGGGGGAAACAGAACCAGACATTTGAGAACCTTC
. : . : . : . : . : . :
rJMSF044P12- TTCTCTCAGTGTACCATTCAGCATTGCCAATTCCCGTAGCTGGTGCTTTTTATAAAAATC
rJMSF020I08- TTCTCTCAGTGTACCATTCAGCATTGCCAATTCCCGTAGCTGGTGCTTTTTATAAAAATC
rJMSF040O02- TTCTCTCAGTGTACCATTCAGCATTGCCAATTCCCGTAGCTGGTGCTTTTTATAAAAATC
____________________________________________________________
consensus TTCTCTCAGTGTACCATTCAGCATTGCCAATTCCCGTAGCTGGTGCTTTTTATAAAAATC
. : . : . : . : . : . :
rJMSF044P12- TTGAGATTCATCC
rJMSF020I08- TTGAGATTCATCCACAGGCTTGAGTAGATCTTCAAGTATCTCACGTGCTTGCATTAACCG
rJMSF040O02- TTGAGATTCATCCACAGGCTTGAGTAGATCTTCAAGTATCTCACGTGCTTGCATTAACCG
____________________________________________________________
consensus TTGAGATTCATCCACAGGCTTGAGTAGATCTTCAAGTATCTCACGTGCTTGCATTAACCG
. : . : . : . : . : . :
rJMSF020I08- AGCATCAATTATCTCCACTGGCAGTTCAGCCTCCACAACTACATGCAAGGGTTCATTCAA
rJMSF040O02- AGCATCAATTATCTCCACTGGCAGTTCAGCCTCCACAACTACATGCAAGGGTTCATTCAA
____________________________________________________________
consensus AGCATCAATTATCTCCACTGGCAGTTCAGCCTCCACAACTACATGCAAGGGTTCATTCAA
. : . : . : . : . : . :
rJMSF020I08- GTGTTCATACCCAGGTTTACCTCTCATCACCTCTTCCTTTGTAGGGTCCTTGATGCTTCC
rJMSF040O02- GTGTTCATACCCAGGTTTACCTCTCATCACCTCTTCCTTTGTAGGGTCCTTGATGCTTCC
JMSF044P12+ TTTGTAGGGTCCTTGATGCTTCC
____________________________________________________________
consensus GTGTTCATACCCAGGTTTACCTCTCATCACCTCTTCCTTTGTAGGGTCCTTGATGCTTCC
. : . : . : . : . : . :
rJMSF020I08- ACGCCCTCTTATCAAAACGCGGCAGTCAGTACTTACTTCCACTCGCTTAAGGGAGTTTCC
rJMSF040O02- ACGCCCTCTTATCAAAACGCGGCAGTCAGTACTTACTTCCACTCGCTTAAGGGAGTTTCC
JMSF044P12+ ACGCCCTCTTATCAAAACGCGGCAGTCAGTACTTACTTCCACTCGCTTAAGGGAGTTTCC
____________________________________________________________
consensus ACGCCCTCTTATCAAAACGCGGCAGTCAGTACTTACTTCCACTCGCTTAAGGGAGTTTCC
. : . : . : . : . : . :
rJMSF020I08- TCT
rJMSF040O02- TCTGGGACCAAGGAGACGTCCAACAAAATTGTAATTGGGATATTGCTCCACAGGTATATC
JMSF044P12+ TCTGGGACCAAGGAGACGTCCAACAAAATTGTAATTGGGATATTGCTCCACAGGTATATC
JMSF040O02+ ACCAAGGAGACGTCCAACAAAATTGTAATTGGGATATTGCTCCACAGGTATATC
JMFN040H04+ GACGTCCAACAAAATGTAATTTGGGATATTGCTCCACAGGTATATC
JMSF020I08+ ACCAAGGAGACGTCCAACAAAATTGTAATTGGGATATTGCTCCACAGGTATATC
____________________________________________________________
consensus TCTGGGACCAAGGAGACGTCCAACAAAATTGTAATTGGGATATTGCTCCACAGGTATATC
. : . : . : . : . : . :
rJMSF040O02- AATTTCTGATGGTCTGCTTAACTATAAGTCCCGATGAGCTACTTTGACTACCAAGCCAGC
JMSF044P12+ AA-TTCTGATGGTCTGCTTAACTATAAGTCCCGATGAGCTACTTTGACTACCAAGCCAGC
JMSF040O02+ AA-TTCTGATGGTCTGCTTAACTATAAGTCCCGATGAGCTACTTTGACTACCAAGCCAGC
JMFN040H04+ AA-TTCTGATGGTCTGCTTAACTATAAGTCCCGATGAGCTACTTTGACTACCAAGCCAGC
JMSF020I08+ AA-TTCTGATGGTCTGCTTAACTATAAGTCCCGATGAGCTACTTTGACTACCAAGCCAGC
____________________________________________________________
consensus AA-TTCTGATGGTCTGCTTAACTATAAGTCCCGATGAGCTACTTTGACTACCAAGCCAGC
. : . : . : . : . : . :
rJMSF040O02- TTTGTGCA
JMSF044P12+ TTTGTGCAGAAGAAGACTGCACCAAACCTGACATTTCGGATTGAAATGGTGATGACCATC
JMSF040O02+ TTTGTGCAGAAGAAGACTGCACCAAACCTGACATTTCGGATTGAAATGGTGATGACCATC
JMFN040H04+ TTTGTGCAGAAGAAGACTGCACCAAACCTGACATTTCGGATTGAAATGGTGATGACCATC
JMSF020I08+ TTTGTGCAGAAGAAGACTGCACCAAACCTGACATTTCGGATTGAAATGGTGATGACCATC
____________________________________________________________
consensus TTTGTGCAGAAGAAGACTGCACCAAACCTGACATTTCGGATTGAAATGGTGATGACCATC
. : . : . : . : . : . :
JMSF044P12+ TGTCCTTGTTAGCACCTCCATTTGAAAACAGTCCTCCTGAAGCCAAGGGGCTACCATGTT
JMSF040O02+ TGTTCTTGTTAGCACCTCCATTTGAAAACAGTCCTCCTGAAGCCAAGGGGCTACCATGTT
JMFN040H04+ TGTCCTTGTTAGCACCTCCATTTGAAAACAGTCCTCCTGAAGCCAAGGGGCTACCATGTT
JMSF020I08+ TGTCCTTGTTAGCACCTCCATTTGAAAACAGTCCTCCTGAAGCCAAGGGGCTACCATGTT
____________________________________________________________
consensus TGTCCTTGTTAGCACCTCCATTTGAAAACAGTCCTCCTGAAGCCAAGGGGCTACCATGTT
. : . : . : . : . : . :
JMSF044P12+ CAAGCCCACTTTGATCTAAAACAGATGCATTCCCCAAGAGTGTAGTTACACGAAGTATTT
JMSF040O02+ CAAGCCCACTTTGATCTAAAACAGATGCATTCCCCAAGAGTGTAGTTACACGAAGTATTT
JMFN040H04+ CAAGCCCACTTTGATCTAAAACAGATGCATTCCCCAAGAGTGTAGTTACACGAAGTATTT
JMSF020I08+ CAAGCCCACTTTGATCTAAAACAGATGCATTCCCCAAGAGTGTAGTTACACGAAGTATTT
____________________________________________________________
consensus CAAGCCCACTTTGATCTAAAACAGATGCATTCCCCAAGAGTGTAGTTACACGAAGTATTT
. : . : . : . : . : . :
JMSF044P12+ CCTGGTTTAGCAACCGAAAGCAATTAGGAAGCACAGGCATAAAAGGACTGAGTTTGCTAC
JMSF040O02+ CCTGGTTTAGCAACCGAAAGCAATTAGGAAGCACAGGCATAAAAGGACTGAGTTTGCTAC
JMFN040H04+ CCTGGTTTAGCAACCGAAAGCAATTAGGAAGCACAGGCATAAAAGGACTGAGTTTGCTAC
JMSF020I08+ CCTGGTTTAGCAACCGAAAGCAATTAGGAAGCACAGGCATAAAAGGACTGAGTTTGCTAC
____________________________________________________________
consensus CCTGGTTTAGCAACCGAAAGCAATTAGGAAGCACAGGCATAAAAGGACTGAGTTTGCTAC
. : . : . : . : . : . :
JMSF044P12+ GTTCAGCAAGCAACTCCGCAAGATACTTCTCTTGCTCGACGAGGGCAGAGGAAGCGGAGC
JMSF040O02+ GTTCAGCAAGCAACTCCGCAAGATACTTCTCTTGCTCGACGAGGGCAGAGGAAGCGGAGC
JMFN040H04+ GTTCAGCAAGCAACTCCGCAAGATACTTCTCTTGCTCGACGAGGGC
JMSF020I08+ GTTCAGCAAGCAACTCCGCAAGATACTTCTCTTGCTCGACGAGGGCAGAGGAAGCGGAGC
____________________________________________________________
consensus GTTCAGCAAGCAACTCCGCAAGATACTTCTCTTGCTCGACGAGGGCAGAGGAAGCGGAGC
. : . : . : . : . : . :
JMSF044P12+ GGAGAGCGCCGATGTGAGGAGAGTGAGGGGCGGAGGGTGAAGGCGAGTACGCCATAAACC
JMSF040O02+ GGAGAGCGCCGATGTGAGGAGAGTGAGGGGCGGAGGGTGAAGGCGAGTACGCCATAAACC
JMSF020I08+ GGAGAGCGCCGATGTGAGGAGAGTGAGGGGCGGAGGGTGAAGGCGAGTACGCCATAAACC
____________________________________________________________
consensus GGAGAGCGCCGATGTGAGGAGAGTGAGGGGCGGAGGGTGAAGGCGAGTACGCCATAAACC
. : . : . : . : . : . :
JMSF044P12+ TGCTAGAAGCCATCTGTTTGGAGGTGAATATTGGAAAGAGCAGATTCACCTTGCACCGCC
JMSF040O02+ TGCTAGAAGCCATCTGTTTGGAGGTGAATATTGGAAAGAGCAGATTCACCTTGCACCGCC
JMSF020I08+ TGCTAGAAGCCATCTGTTTGGAGGTGAATATTGGAAAGAGCAGATTCACCTTGCACCGCC
____________________________________________________________
consensus TGCTAGAAGCCATCTGTTTGGAGGTGAATATTGGAAAGAGCAGATTCACCTTGCACCGCC
. : . : . : . : . : . :
JMSF044P12+ GCTAACAGCCTCCGTTCTGGCGACAGAGATGATTGTGATCGATAGCCGGAGACTATAATC
JMSF040O02+ GCTAACAGCCTCCGTTCTGGCGACAGAGATGATTGTGATCGATAGCCGGAGACTATAATC
JMSF020I08+ GCTAACAGCCTCCGTTCTGGCGACAGAGATGATTGTGATCGATAGCCGGAGACTATAATC
____________________________________________________________
consensus GCTAACAGCCTCCGTTCTGGCGACAGAGATGATTGTGATCGATAGCCGGAGACTATAATC
. : . : . : . : . : . :
JMSF044P12+ GCGTCGGT
JMSF040O02+ GCGTCGGTGGAGAAAATTGTTCAACAGACCCACCACCACTCGTACATACGTTTCTA
JMSF020I08+ GCGTCGGTGGAGAAAATTGTTCAACAGACCCACCACCACTCGTACATACGTTTCTACTCC
____________________________________________________________
consensus GCGTCGGTGGAGAAAATTGTTCAACAGACCCACCACCACTCGTACATACGTTTCTACTCC