Contig 006488:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF005G24Sequence284006488 (5)
JMSF006M06Sequence385006488 (5)ref|XP_004229502.1|3e-08PREDICTED: probable isoleucine--tRNA ligase, mitochondrial [Solanum lycopersicu
JMSF019H13Sequence522006488 (5)ref|XP_009619108.1|2e-10PREDICTED: isoleucine--tRNA ligase, mitochondrial isoform X1 [Nicotiana tomento
JMSF032G01Sequence716006488 (5)ref|XP_004229502.1|3e-67PREDICTED: probable isoleucine--tRNA ligase, mitochondrial [Solanum lycopersicu577011357 (3)emb|CAN78050.1|6e-45hypothetical protein VITISV_015862 [Vitis vinifera]
JMSF047N04Sequence649006488 (5)ref|XP_004229502.1|3e-38PREDICTED: probable isoleucine--tRNA ligase, mitochondrial [Solanum lycopersicu569011357 (3)emb|CAN78050.1|1e-46hypothetical protein VITISV_015862 [Vitis vinifera]

Alignment

This contig is upended


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JMSF032G01+                                                             CACTTTATGG
                      ____________________________________________________________
consensus                                                               CACTTTATGG
 
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JMSF032G01+           TTTTGAAGAAGCTTATAACGATTAATAATGTCCTTCAAAATCTTATTTAAAGCATGCCCC
                      ____________________________________________________________
consensus             TTTTGAAGAAGCTTATAACGATTAATAATGTCCTTCAAAATCTTATTTAAAGCATGCCCC
 
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JMSF047N04+                                                               CCCCATTA
JMSF032G01+           ATGTGTAAATCACCATTAGCATAAGGAGGACCATCATGAAGAACAAAATTTGCCCCATTA
                      ____________________________________________________________
consensus             ATGTGTAAATCACCATTAGCATAAGGAGGACCATCATGAAGAACAAAATTTGCCCCATTA
 
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JMSF047N04+           TTCCTCTCAGAAACCCTCTTAAAAACCTGGTTTTCATCCCATAGTTTTTGAAGTTCTAGC
JMSF032G01+           TTCCTCTCAGAAACCCTCTTAAAAACCTGGTTTTCATCCCATAGTTTTTGAAGTTCTAGC
                      ____________________________________________________________
consensus             TTCCTCTCAGAAACCCTCTTAAAAACCTGGTTTTCATCCCATAGTTTTTGAAGTTCTAGC
 
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JMSF047N04+           TCTCTAATTACAGAATTTGCTCTTAAACTAAATGTTGTCTTTGGCAGATCAACTGTGTGC
JMSF032G01+           TCTCTAATTACAGAATTTGCTCTTAAACTAAATGTTGTCTTTGGCAGATCAACTGTGTGC
                      ____________________________________________________________
consensus             TCTCTAATTACAGAATTTGCTCTTAAACTAAATGTTGTCTTTGGCAGATCAACTGTGTGC
 
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JMSF006M06+                                      CCTTCAGATGCTTTTTTGGCCAACATCACAGGT
JMSF047N04+           TTATACTTCCCATCTTCCTGCTTTGAACCTTCAGATGCTTTTTTGGCCAACATCACAGGT
JMSF032G01+           TTATACTTCCCATCTTCCTGCTTTGAACCTTCAGATGCTTTTTTGGCCAACATCACAGGT
JMSF019H13+                             TGCTTTGAACCTTCAGATGCTTTTTTGGCCAACATCACAGGT
                      ____________________________________________________________
consensus             TTATACTTCCCATCTTCCTGCTTTGAACCTTCAGATGCTTTTTTGGCCAACATCACAGGT
 
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JMSF006M06+           CCTCGAGACCTCCTTTTTGAAGAAGGAGAAGTGTCGGAGTAGGTACAATAACGAGTCACA
JMSF047N04+           CCTCGAGACCTCCTTTTTGAAGAAGGAGAAGTGTCGGAGTAGGTACAATAACGAGTCACA
JMSF032G01+           CCTCGAGACCTCCTTTTTGAAGAAGGAGAAGTGTCGGAGTAGGTACAATAACGAGTCACA
JMSF019H13+           CCTCGAGACCTCCTTTTTGAAGAAGGAGAAGTGTCGGAGTAGGTACAATAACGAGTCACA
                      ____________________________________________________________
consensus             CCTCGAGACCTCCTTTTTGAAGAAGGAGAAGTGTCGGAGTAGGTACAATAACGAGTCACA
 
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JMSF006M06+           TTCAAGAGAGATAAACCTCTAGCTGAAGAGCTGCTTCTTATATTCAATGAGCTAAAATAA
JMSF047N04+           TTCAAGAGAGATAAACCTCTAGCTGAAGAGCTGCTTCTTATATTCAATGAGCTAAAATAA
JMSF032G01+           TTCAAGAGAGATAAACCTCTAGCTGAAGAGCTGCTTCTTATATTCAATGAGCTAAAATAA
JMSF019H13+           TTCAAGAGAGATAAACCTCTAGCTGAAGAGCTGCTTCTTATATTCAATGAGCTAAAATAA
                      ____________________________________________________________
consensus             TTCAAGAGAGATAAACCTCTAGCTGAAGAGCTGCTTCTTATATTCAATGAGCTAAAATAA
 
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JMSF006M06+           CTAGTGGTCCTAAATGATGAGGAATTCTTCATTGACCAAGCCTTGTAAGTGGAAGTTTGT
JMSF047N04+           CTAGTGGTCCTAAATGATGAGGAATTCTTCATTGACCAAGCCTTGTAAGTGGAAGTTTGT
JMSF032G01+           CTAGTGGTCCTAAATGATGAGGAATTCTTCATTGACCAAGCCTTGTAAGTGGAAGTTTGT
JMSF005G24+                     TAAATGATGAGGAATTCTTCATTGACCAAGCCTTGTAAGTGGAAGTTTGT
JMSF019H13+           CTAGTGGTCCTAAATGATGAGGAATTCTTCATTGACCAAGCCTTGTAAGTGGAAGTTTGT
                      ____________________________________________________________
consensus             CTAGTGGTCCTAAATGATGAGGAATTCTTCATTGACCAAGCCTTGTAAGTGGAAGTTTGT
 
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JMSF006M06+           AGAGCCATTTTGAAATGAGAGACAGAGGACGAAATTGGCTTTGTGGAATTGTGGAGAAGG
JMSF047N04+           AGAGCCATTTTGAAATGAGAGACAGAGGACGAAATTGGCTTTGTGGAATTGTGGAGAAGG
JMSF032G01+           AGAGCCATTTTGAAATGAGAGACAGAGGACGAAATTGGCTTTGTGGAATTGTGGAGAAGG
JMSF005G24+           AGAGCCATTTTGAAATGAGAGACAGAGGACGAAATTGGCTTTGTGGAATTGTGGAGAAGG
JMSF019H13+           AGAGCCATTTTGAAATGAGAGACAGAGGACGAAATTGGCTTTGTGGAATTGTGGAGAAGG
                      ____________________________________________________________
consensus             AGAGCCATTTTGAAATGAGAGACAGAGGACGAAATTGGCTTTGTGGAATTGTGGAGAAGG
 
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JMSF006M06+           ATAGCTTCCATTTATATGGAACTGCAGCTACTTAAGAAGAAGAAGAAGAAGAAGATACTC
JMSF047N04+           ATAGCTTCCATTTATATGGAACTGCAGCTACTTAAGAAGAAGAAGAAGAAGAAGATACTC
JMSF032G01+           ATAGCTTCCATTTATATGGAACTGCAGCTACTTAAGAAGAAGAAGAAGAAGAAGATACTC
JMSF005G24+           ATAGCTTCCATTTATATGGAACTGCAGCTACTTAAGAAGAAGAAGAAGAAGAAGATACTC
JMSF019H13+           ATAGCTTCCATTTATATGGAACTGCAGCTACTTAAGAAGAAGAAGAAGAAGAAGATACTC
                      ____________________________________________________________
consensus             ATAGCTTCCATTTATATGGAACTGCAGCTACTTAAGAAGAAGAAGAAGAAGAAGATACTC
 
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JMSF006M06+           TGTTCCATTTGACTAAGAAAGTGACTGAGGAAGAAGATGGTGTGCGCGGGC         
JMSF047N04+           TGTTCCATTTGACTAAGAAAGTGACTGAGGAAGAAGATGGTGTGCGCGGGC         
JMSF032G01+           TGTTCCATTTGACTAAGAAAGTGACTGAGGAAGAAGATGGTGTGCGCGGGCGGATAAGCG
JMSF005G24+           TGTTCCATTTGACTAAGAAAGTGACTGAGGAAGAAGATGGTGTGCGCGGGCGGATAAGCG
JMSF019H13+           TGTTCCATTTGACTAAGAAAGTGACTGAGGAAGAAGATGGTGTGCGCGGGCGGATAAGCG
                      ____________________________________________________________
consensus             TGTTCCATTTGACTAAGAAAGTGACTGAGGAAGAAGATGGTGTGCGCGGGCGGATAAGCG
 
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JMSF032G01+           AGCGACGAAGCCTGCGATTTTATAGTTTGTAGAGTGTGGAGTAAC               
JMSF005G24+           AGCGACGAAGCCTGCGATTTTATAGTTTGTAGAGTGTGGAGTAACAATTTTGT       
JMSF019H13+           AGCGACGAAGCCTGCGATTTTATAGTTTGTAGAGTGTGGAGTAACAATTTTGTGGTTAAT
                      ____________________________________________________________
consensus             AGCGACGAAGCCTGCGATTTTATAGTTTGTAGAGTGTGGAGTAACAATTTTGTGGTTAAT
 
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JMSF019H13+           TGCATTCCACCACTTGTATTTTCTGAAATTGGGTGTGCCCTGAATTCTGCTGCGCTGCCC
                      ____________________________________________________________
consensus             TGCATTCCACCACTTGTATTTTCTGAAATTGGGTGTGCCCTGAATTCTGCTGCGCTGCCC