Contig 006483:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF019D07Sequence451006483 (2)ref|XP_006347433.1|8e-71PREDICTED: histone deacetylase 6-like [Solanum tuberosum]760007113 (2)ref|XP_006347433.1|5e-84PREDICTED: histone deacetylase 6-like [Solanum tuberosum]
JMSF022O14Sequence690006483 (2)ref|XP_006347433.1|3e-128PREDICTED: histone deacetylase 6-like [Solanum tuberosum]724007113 (2)ref|XP_006347433.1|7e-74PREDICTED: histone deacetylase 6-like [Solanum tuberosum]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF022O14+                                         TCCTCAACGCCATCCCCATGATGAATATCA
                      ____________________________________________________________
consensus                                           TCCTCAACGCCATCCCCATGATGAATATCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF022O14+           ATACCCACATATAGCACACGCCTGTGGTACTTCAGAAGTTCAAGGATGCCCAAAACGATG
                      ____________________________________________________________
consensus             ATACCCACATATAGCACACGCCTGTGGTACTTCAGAAGTTCAAGGATGCCCAAAACGATG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF022O14+           TCGTTAACGTAGCAGAAGCCCGAAGCCTCGCTCTTCTTCGCATGATGCAAACCCCCCGCC
                      ____________________________________________________________
consensus             TCGTTAACGTAGCAGAAGCCCGAAGCCTCGCTCTTCTTCGCATGATGCAAACCCCCCGCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF022O14+           CAATTGATAGCTATGTCAGCGTCCTGTCGGTTAAGCTTCACGGCGGCGCCGATGGATCCA
                      ____________________________________________________________
consensus             CAATTGATAGCTATGTCAGCGTCCTGTCGGTTAAGCTTCACGGCGGCGCCGATGGATCCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF022O14+           CCGGCCGAAGCTTGGCAAAACTTAAAAAGCCCGTCGAAGACGGGGCAATCCTCGCCGACG
JMSF019D07+                                        CCCGTCGAAGACGGGGCAATCCTCGCCGACG
                      ____________________________________________________________
consensus             CCGGCCGAAGCTTGGCAAAACTTAAAAAGCCCGTCGAAGACGGGGCAATCCTCGCCGACG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF022O14+           TTGAAGCGCTTGAGATGGCGAGAGTGAGTGTGGTCGTGGAGCGTCTCGGGACTGACAGAA
JMSF019D07+           TTGAAGCGCTTGAGATGGCGAGAGTGAGTGTGGTCGTGGAGCGTCTCGGGACTGACAGAA
                      ____________________________________________________________
consensus             TTGAAGCGCTTGAGATGGCGAGAGTGAGTGTGGTCGTGGAGCGTCTCGGGACTGACAGAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF022O14+           GCCAGAAAGTCCACGTAGTCCGGCGAGTGAAAGCGGCGGATGTCGACCGCATCGGCCGGA
JMSF019D07+           GCCAGAAAGTCCACGTAGTCCGGCGAGTGAAAGCGGCGGATGTCGACCGCATCGGCCGGA
                      ____________________________________________________________
consensus             GCCAGAAAGTCCACGTAGTCCGGCGAGTGAAAGCGGCGGATGTCGACCGCATCGGCCGGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF022O14+           AAGGGGCGACTGATTTCCATGCGGCGGTGGAGGGAATAATGGACGACTAGGTTGTGGGCC
JMSF019D07+           AAGGGGCGACTGATTTCCATGCGGCGGTGGAGGGAATAATGGACGACTAGGTTGTGGGCC
                      ____________________________________________________________
consensus             AAGGGGCGACTGATTTCCATGCGGCGGTGGAGGGAATAATGGACGACTAGGTTGTGGGCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF022O14+           ATACGAATACGGTGGGGCTTCATGGGGTGTCCCTGTCCGTAGTAGTAGTCTCCGATTGTC
JMSF019D07+           ATACGAATACGGTGGGGCTTCATGGGGTGTCCCTGTCCGTAGTAGTAGTCTCCGATTGTC
                      ____________________________________________________________
consensus             ATACGAATACGGTGGGGCTTCATGGGGTGTCCCTGTCCGTAGTAGTAGTCTCCGATTGTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF022O14+           GGCTCATAGAAATACGACACGCGCCGCTTCTTGGCATCGGTTCCAGTGGAGGGGAGCGAC
JMSF019D07+           GGCTCATAGAAATACGACACGCGCCGCTTCTTGGCATCGGTTCCAGTGGAGGGGAGCGAC
                      ____________________________________________________________
consensus             GGCTCATAGAAATACGACACGCGCCGCTTCTTGGCATCGGTTCCAGTGGAGGGGAGCGAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF022O14+           GCGCCGCCGCTCTCTGCCGTTGAAGAGTACATCGGAGTATCGGACGCTACTAGGACAGGA
JMSF019D07+           GCGCCGCCGCTCTCTGCCGTTGAAGAGTACATCGGAGTATCGGACGCTACTAGGACAGGA
                      ____________________________________________________________
consensus             GCGCCGCCGCTCTCTGCCGTTGAAGAGTACATCGGAGTATCGGACGCTACTAGGACAGGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF022O14+           AACTTTGACTTAGGGCGAAAATGTAAATAACGAAAAGACGGAGGAGTAATATTGGT    
JMSF019D07+           AACTTTGACTTAGGGCGAAAATGTAAATAACGAAAAGACGGAGGAGTAATATTGGTTCTC
                      ____________________________________________________________
consensus             AACTTTGACTTAGGGCGAAAATGTAAATAACGAAAAGACGGAGGAGTAATATTGGTTCTC