Contig 006478:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF013B05Sequence340006478 (4)ref|XP_007140432.1|3e-10hypothetical protein PHAVU_008G111400g [Phaseolus vulgaris] gb|ESW12426.1| hypot681005554 (3)ref|XP_009778445.1|1e-123PREDICTED: protein SSUH2 homolog isoform X3 [Nicotiana sylvestris]
JMFF049D18Sequence611006478 (4)ref|XP_009586657.1|5e-66PREDICTED: protein SSUH2 homolog isoform X2 [Nicotiana tomentosiformis]572005554 (3)ref|XP_009778445.1|2e-83PREDICTED: protein SSUH2 homolog isoform X3 [Nicotiana sylvestris]
JMFS011D03Sequence615006478 (4)ref|XP_010325816.1|1e-77PREDICTED: protein SSUH2 homolog isoform X3 [Solanum lycopersicum]
JMSF018F03Sequence256006478 (4)ref|XP_007140432.1|7e-11hypothetical protein PHAVU_008G111400g [Phaseolus vulgaris] gb|ESW12426.1| hypot745005554 (3)ref|XP_009778445.1|3e-121PREDICTED: protein SSUH2 homolog isoform X3 [Nicotiana sylvestris]

Alignment

This contig is upended


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JMFS011D03+                                                   CAACCTGGGCATTTGTCAAT
                      ____________________________________________________________
consensus                                                     CAACCTGGGCATTTGTCAAT
 
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JMFS011D03+           CTTTTCAGAATGAGGAACTCTTGTCCGCGACTCTTTGTGAGGTATAAACAAGACGGGAAA
JMFF049D18+                                                           CAAGACGGGAAA
                      ____________________________________________________________
consensus             CTTTTCAGAATGAGGAACTCTTGTCCGCGACTCTTTGTGAGGTATAAACAAGACGGGAAA
 
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JMFS011D03+           TTCAGACCTTAAATCCAATTCCCATATTCCAGGTTCAGGTTCAGGTTTTTTATCCTTTCC
JMFF049D18+           TTCAGACTNTAAATCCAATTCCCATATTCCAGGTTCAGGTTCAGGTTTTTTATCCTTTCC
                      ____________________________________________________________
consensus             TTCAGACTTTAAATCCAATTCCCATATTCCAGGTTCAGGTTCAGGTTTTTTATCCTTTCC
 
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JMFS011D03+           TTCAATATTGCCGCCAGAGTACGGCTCTGTTTCAGTGATCATTTCCCTCTCTTCTATAAA
JMFF049D18+           TTCAATATTGCCGCCAGAGTACGGCTCTGTTTCAGTGATCATTTCCCTCTCTTCTATAAA
                      ____________________________________________________________
consensus             TTCAATATTGCCGCCAGAGTACGGCTCTGTTTCAGTGATCATTTCCCTCTCTTCTATAAA
 
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JMFS011D03+           AGTATCGAGAGTTCCCACATATACATTGCAGTCCTCAACTGCATGGATTTTCCAGGTTCG
JMFF049D18+           AGTATCGAGAGTTCCCACATATACATTGCAGTCCTCAACTGCATGGATTTTCCAGGTTCG
                      ____________________________________________________________
consensus             AGTATCGAGAGTTCCCACATATACATTGCAGTCCTCAACTGCATGGATTTTCCAGGTTCG
 
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JMFS011D03+           AGCTGGACGGCTTCCCCAACACCAATGATGACCAACATGGTCTACAAGCAACTTCCGTAT
JMFF049D18+           AGCTGGACGGCTTCCCCAACACCAATGATGACCAACATGGTCTACAAGCAACTTCCGTAT
                      ____________________________________________________________
consensus             AGCTGGACGGCTTCCCCAACACCAATGATGACCAACATGGTCTACAAGCAACTTCCGTAT
 
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JMFS011D03+           CTCTACCTCATCTAGCACTTGCCTCCGATCACCACCAGCAGCTCTGGCTACTTCCCCATA
JMFF013B05+                             TTGCCTCCGATCACCACCAGCAGCTNTGGCTACTTCCCCATA
JMFF049D18+           CTCTACCTCATCTAGCACTTGCCTCCGATCACCACCAGCAGCTCTGGCTACTTCCCCATA
                      ____________________________________________________________
consensus             CTCTACCTCATCTAGCACTTGCCTCCGATCACCACCAGCAGCTCTGGCTACTTCCCCATA
 
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JMFS011D03+           ATATCCAACGTGATAGTTGAACCCCGGCTCATGGGGTTGGGATTGATAGGACTGGGGAGA
JMFF013B05+           ATATCCAACGTGATAGTTGAACCCCGGCTCATGGGGTTGGGATTGATAGGACTGGGGAGA
JMFF049D18+           ATATCCAACGTGATAGTTGAACCCCGGCTCATGGGGTTGGGATTGATAGGACTGGGGAGA
JMSF018F03+                                                       GATAGGACTGGGGAGA
                      ____________________________________________________________
consensus             ATATCCAACGTGATAGTTGAACCCCGGCTCATGGGGTTGGGATTGATAGGACTGGGGAGA
 
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JMFS011D03+           GCTGACCAAGGGGGCATGGAGGCTAGGTGGGTAGGGACTGGAAGCGGCGGCGGCGGCGGA
JMFF013B05+           GCTGACCAAGGGGGCATGGAGGCTAGGTGGGTAGGGACTGGAAGCGGCGGCGGCGGCGGA
JMFF049D18+           GCTGACCAAGGGGGCATGGAGGCTAGGTGGGTAGGGACTGGAAGCGGCGGCGGCGGCGGA
JMSF018F03+           GCTGACCAAGGGGGCATGGAGGCTAGGTGGGTAGGGACTGGAAGCGGCGGCGGCGGCGGA
                      ____________________________________________________________
consensus             GCTGACCAAGGGGGCATGGAGGCTAGGTGGGTAGGGACTGGAAGCGGCGGCGGCGGCGGA
 
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JMFS011D03+           TCGAATCTCATCGACGCTGACCTCCGTTCCGGCCAGCGAAGCCGTTGGAATTACAGAACC
JMFF013B05+           TCGAATCTCATCGACGCTGACCTCCGTTCCGGCCAGCGAAGCCGTTGGAATTACAGAACC
JMFF049D18+           TCGAATCTCATCGACGCTGACCTCCGTTCCGGCCAGCGAAGCCGTTGGAATTACAGAACC
JMSF018F03+           TCGAATCTCATCGACGCTGACCTCCGTTCCGGCCAGCGAAGCCGTTGGAATTACAGAACC
                      ____________________________________________________________
consensus             TCGAATCTCATCGACGCTGACCTCCGTTCCGGCCAGCGAAGCCGTTGGAATTACAGAACC
 
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JMFS011D03+           CGCCCCGCCGACGTACTGATACGACGAATTCCATCTTCCACTCCCTCCGCCTTGG     
JMFF013B05+           CGCCCCGCCGACGTACTGATACGACGAATTCCATCTTCCACTCCCTCCGCCTTGGTTTTC
JMFF049D18+           CGCCCCGCCGACGTACTGATACGACGAATTCCATCTTCCACTCCCTCCGCCTTGGTTTTC
JMSF018F03+           CGCCCCGCCGACGTACTGATACGACGAATTCCATCTTCCACTCCCTCCGCCTTGGTTTTC
                      ____________________________________________________________
consensus             CGCCCCGCCGACGTACTGATACGACGAATTCCATCTTCCACTCCCTCCGCCTTGGTTTTC
 
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JMFF013B05+           CGCTGATAGCAGTGGCTCCTCCATGATTGACATGCCGAACTGAAGAAGATATGCGCTC  
JMFF049D18+           CGCTGATAGCAGTGGCTCCTCCATGATTGACATGCCGAACTGAAGAAGATATGCGCTC  
JMSF018F03+           CGCTGATAGCAGTGGCTCCTCCATGATTGACATGCCGAACTGAAGAAGATATGCGCTCTC
                      ____________________________________________________________
consensus             CGCTGATAGCAGTGGCTCCTCCATGATTGACATGCCGAACTGAAGAAGATATGCGCTCTC