| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF045N22 | Sequence | 635 | 006474 (5) | ref|XP_009794054.1| | 1e-55 | PREDICTED: DEAD-box ATP-dependent RNA helicase 8-like isoform X2 [Nicotiana syl | 612 | 014917 | gb|ADV04059.1| | 9e-71 | DEAD/DEAH box helicase 8 [Hevea brasiliensis] |
| JMFF050E01 | Sequence | 616 | 006474 (5) | ref|XP_009794054.1| | 6e-57 | PREDICTED: DEAD-box ATP-dependent RNA helicase 8-like isoform X2 [Nicotiana syl | 597 | 013858 (2) | gb|ADV04059.1| | 1e-72 | DEAD/DEAH box helicase 8 [Hevea brasiliensis] |
| JMSF017K01 | Sequence | 417 | 006474 (5) | ref|XP_009794054.1| | 3e-10 | PREDICTED: DEAD-box ATP-dependent RNA helicase 8-like isoform X2 [Nicotiana syl | 181 | 004307 (3) | |||
| JMSF032M18 | Sequence | 663 | 006474 (5) | ref|XP_009794054.1| | 5e-69 | PREDICTED: DEAD-box ATP-dependent RNA helicase 8-like isoform X2 [Nicotiana syl | 192 | 004307 (3) | |||
| JMSF050C14 | Sequence | 707 | 006474 (5) | ref|XP_009794054.1| | 3e-72 | PREDICTED: DEAD-box ATP-dependent RNA helicase 8-like isoform X2 [Nicotiana syl | 149 | 004307 (3) | |||
This contig is upended
. : . : . : . : . : . :
JMSF032M18+ GCAGGAATG
JMSF050C14+ ACTTGAATAGAGTTGATGTCAATATCAATTTTTCTAAGGCAGGAATG
____________________________________________________________
consensus ACTTGAATAGAGTTGATGTCAATATCAATTTTTCTAAGGCAGGAATG
. : . : . : . : . : . :
JMSF032M18+ CAGAAGGCAGCCGTTTTTCCAGTTCCATTCTTAGCTCTAGCAAGAATATCACTTCCAGTT
JMFF050E01+ AGCAAGAATATCACTTCCAGTT
JMFF045N22+ AGCAAGAATATCACTTCCAGTA
JMSF050C14+ CAGAAGGCAGCCGTTTTTCCAGTTCCATTCTTAGCTCTAGCAAGAATATCACTTCCAGTT
____________________________________________________________
consensus CAGAAGGCAGCCGTTTTTCCAGTTCCATTCTTAGCTCTAGCAAGAATATCACTTCCAGTT
. : . : . : . : . : . :
JMSF032M18+ AGGGCAATTGGAATACTTTCCTCCTGTATTGGCGACGGTTTCTCAAACCCCTTCTCATAA
JMFF050E01+ AGGGCAATTGGAATACTTTCCTCCTGTATNGGCGACGGTTTCTCAAACCCCTTCTCATAA
JMFF045N22+ GGGGCAATGGANATACTTTCCTCCTGTATNGGCGACGGTTTCTCAAACCCCTTCTCATAA
JMSF050C14+ AGGGCAATTGGAATACTTTCCTCCTGTATTGGCGACGGTTTCTCAAACCCCTTCTCATAA
____________________________________________________________
consensus AGGGCAATTGGAATACTTTCCTCCTGTATTGGCGACGGTTTCTCAAACCCCTTCTCATAA
. : . : . : . : . : . :
JMSF032M18+ ATCCCCATGAGCAGTTCACGTTTCAAAAAGTAGTCTTCAAATTCATTCCCCTTAGTTGCT
JMFF050E01+ ATCCCCATGAGCAGTTCACGTTTCAAAAAGTAGTCTTCAAATTCATTCCCCTTAGTTGCT
JMFF045N22+ ATCCCCATGAGCAGTTCACGTTTCAAAAAGTAGTCTTCAAATTCATTCCCCTTAGTTGCT
JMSF050C14+ ATCCCCATGAGCAGTTCACGTTTCAAAAAGTAGTCTTCAAATTCATTCCCCTTAGTTGCT
____________________________________________________________
consensus ATCCCCATGAGCAGTTCACGTTTCAAAAAGTAGTCTTCAAATTCATTCCCCTTAGTTGCT
. : . : . : . : . : . :
JMSF032M18+ GTCACGTCCTCAGTTCTGTACCGTGTATCTGGTGGAGGTATATTCAACTGCGCCTTCCAA
JMFF050E01+ GTCACGTCCTCAGTTCTGTACCGTGTATCTGGTGGAGGTATATTCAACTGCGCCTTCCAA
JMFF045N22+ GTCACGTCCTCAGTTCTGTACCGTGTATCTGGTGGAGGTATATTCAACTGCGCCTTCCAA
JMSF050C14+ GTCACGTCCTCAGTTCTGTACCGTGTATCTGGTGGAGGTATATTCAACTGCGCCTTCCAA
____________________________________________________________
consensus GTCACGTCCTCAGTTCTGTACCGTGTATCTGGTGGAGGTATATTCAACTGCGCCTTCCAA
. : . : . : . : . : . :
JMSF032M18+ TTTTGCGAACTTGCATCAATTCCTTCAGATTGCACGGTCTTTTCAACCTCGTCGGCGGTA
JMFF050E01+ TTTTGCGAACTTGCATCAATTCCTTCAGATTGCACGGTCTTTTCAACCTCGTCGGCGGTA
JMFF045N22+ TTTTGCGAACTTGCATCAATTCCTTCAGATTGCACGGTCTTTTCAACCTCGTCGGCGGTA
JMSF050C14+ TTTTGCGAACTTGCATCAATTCCTTCAGATTGCACGGTCTTTTCAACCTCGTCGGCGGTA
JMSF017K01+ TGCGAACTTGCATCAATTCCTTCAGATTGCACGGTCTTTTCAACCTCGTCGGCGGTA
____________________________________________________________
consensus TTTTGCGAACTTGCATCAATTCCTTCAGATTGCACGGTCTTTTCAACCTCGTCGGCGGTA
. : . : . : . : . : . :
JMSF032M18+ AAATCAGCACCCAACTCGTTGTTCCGTCTGAGCCACTGCTGGGTTTGCTGGTTCTGGAAA
JMFF050E01+ AAATCAGCACCCAACTCGTTGTTCCGTCTGAGCCACTGCTGGGTTTGCTGGTTCTGGAAA
JMFF045N22+ AAATCAGCACCCAACTCGTTGTTCCGTCTGAGCCACTGCTGGGTTTGCTGGTTCTGGAAA
JMSF050C14+ AAATCAGCACCCAACTCGTTGTTCCGTCTGAGCCACTGCTGGGTTTGCTGGTTCTGGAAA
JMSF017K01+ AAATCAGCACCCAACTCGTTGTTCCGTCTGAGCCACTGCTGGGTTTGCTGGTTCTGGAAA
____________________________________________________________
consensus AAATCAGCACCCAACTCGTTGTTCCGTCTGAGCCACTGCTGGGTTTGCTGGTTCTGGAAA
. : . : . : . : . : . :
JMSF032M18+ TGCTGTTGATTTGGAAGTGGACTTCGCTGGACGTACTGATGAGGATTTCTAGGCTTAAAA
JMFF050E01+ TGCTGTTGATTTGGAAGTGGACTTCGCTGGACGTACTGATGAGGATTTCTAGGCTTAAAA
JMFF045N22+ TGCTGTTGATTTGGAAGTGGACTTCGCTGGACGTACTGATGAGGATTTCTAGGCTTAAAA
JMSF050C14+ TGCTGTTGATTTGGAAGTGGACTTCGCTGGACGTACTGATGAGGATTTCTAGGCTTAAAA
JMSF017K01+ TGCTGTTGATTTGGAAGTGGACTTCGCTGGACGTACTGATGAGGATTTCTAGGCTTAAAA
____________________________________________________________
consensus TGCTGTTGATTTGGAAGTGGACTTCGCTGGACGTACTGATGAGGATTTCTAGGCTTAAAA
. : . : . : . : . : . :
JMSF032M18+ TCAGGGTTTGCGTTAGGGTTCAGGCCGGCACCTCCTCTTCCGCCGCTGCTCATCCCAGGC
JMFF050E01+ TCAGGGTTTGCGTTAGGGTTCAGGCCGGCACCTCCTCTTCCGCCGCTGCTCATCCCAGGC
JMFF045N22+ TCAGGGTTTGCGTTAGGGTTCAGGCCGGCACCTCCTCTTCCGCCGCTGCTCATCCCAGGC
JMSF050C14+ TCAGGGTTTGCGTTAGGGTTCAGGCCGGCACCTCCTCTTCCGCCGCTGCTCATCCCAGGC
JMSF017K01+ TCAGGGTTTGCGTTAGGGTTCAGGCCGGCACCTCCTCTTCCGCCGCTGCTCATCCCAGGC
____________________________________________________________
consensus TCAGGGTTTGCGTTAGGGTTCAGGCCGGCACCTCCTCTTCCGCCGCTGCTCATCCCAGGC
. : . : . : . : . : . :
JMSF032M18+ GGCGGATATCTTGCTCTATAATTCATCTAACAAAATTTTCACACGAGCTAGCCGGAATCA
JMFF050E01+ GGCGGATATCTTGCTCTATAATTCATCTAACAAAATTTTCACACGAGCTAGCCGGAATCA
JMFF045N22+ GGCGGATATCTTGCTCTATAATTCATCTAACAAAATTTTCACACGAGCTAGCCGGAATCA
JMSF050C14+ GGCGGATATCTTGCTCTATAATTCATCTAACAAAATTTTCACACGAGCTAGCCGGAATCA
JMSF017K01+ GGCGGATATCTTGCTCTATAATTCATCTAACAAAATTTTCACACGAGCTAGCCGGAATCA
____________________________________________________________
consensus GGCGGATATCTTGCTCTATAATTCATCTAACAAAATTTTCACACGAGCTAGCCGGAATCA
. : . : . : . : . : . :
JMSF032M18+ ATAACCCCTAAAATGAATCCCTAAAAACTTCCGCCGTGAATACAGAAGATATGTTCTATT
JMFF050E01+ ATAACCCCTAAAATGAATCCCTAAAAACTTCCGCCGTGAATACAGAAGATATGTTCTATT
JMFF045N22+ ATAACCCCTAAAATGAATCCCTAAAAACTTCCGCCGTGAATACAGAAGATATGTTCTATT
JMSF050C14+ ATAACCCCTAAAATGAATCCCTAAAAACTTCCGCCGTGAATACAGAAGATATGTTCTATT
JMSF017K01+ ATAACCCCTAAAATGAATCCCTAAAAACTTCCGCCGTGAATACAGAAGATATGTTCTATT
____________________________________________________________
consensus ATAACCCCTAAAATGAATCCCTAAAAACTTCCGCCGTGAATACAGAAGATATGTTCTATT
. : . : . : . : . : . :
JMSF032M18+ TTGTTTTTCCTCAGCAAAGCAGCTCGACAAATACCGCGATGGAGACGATGGTC
JMFF050E01+ TTGTTTTTCCTCAGCAAAGCAGCTCGACAAATACCGCGATGGAGACGATGGTCA
JMFF045N22+ TTGTTTTTCCTCAGCAAAGCAGCTCGACAAATACCGCGATGGAGACGATGGTCA
JMSF050C14+ TTGTTTTTCCTCAGCAAAGCAGCTCGACAAATACCGCGATGGAGACGATGGTCA
JMSF017K01+ TTGTTTTTCCTCAGCAAAGCAGCTCGACAAATACCGCGATGGAGACGATGGTCAAGACCC
____________________________________________________________
consensus TTGTTTTTCCTCAGCAAAGCAGCTCGACAAATACCGCGATGGAGACGATGGTCAAGACCC