Contig 006468:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF001C15Sequence165006468 (4)725012567 (15)emb|CDX95712.1|8e-119BnaC03g25930D [Brassica napus]
JMSF003C10Sequence298006468 (4)ref|XP_009616399.1|2e-05PREDICTED: protein SAND-like isoform X2 [Nicotiana tomentosiformis]726012786 (3)gb|AIK35211.1|3e-97SAND family protein, partial [Camellia sinensis]
JMSF016N09Sequence466006468 (4)ref|XP_009616399.1|2e-06PREDICTED: protein SAND-like isoform X2 [Nicotiana tomentosiformis]701012786 (3)gb|AIK35211.1|4e-96SAND family protein, partial [Camellia sinensis]
JMSF051H20Sequence602006468 (4)ref|XP_009798422.1|2e-15PREDICTED: protein SAND-like isoform X3 [Nicotiana sylvestris]748012786 (3)gb|AIK35211.1|2e-98SAND family protein, partial [Camellia sinensis]

Alignment

This contig is upended


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JMSF051H20+                         CACTGCAAATTAGACTCCGAAACTCCATCACCGGAGTCACCATTAC
                      ____________________________________________________________
consensus                           CACTGCAAATTAGACTCCGAAACTCCATCACCGGAGTCACCATTAC
 
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JMSF051H20+           CGACTTCGCAAATCTCATCCCCAATTCCAGAGCCCCTGCTACTGGACACACTACTCCCCC
                      ____________________________________________________________
consensus             CGACTTCGCAAATCTCATCCCCAATTCCAGAGCCCCTGCTACTGGACACACTACTCCCCC
 
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JMSF051H20+           TCTCGCCCGCATAAGCACTGCTACTTGGGCTTGGCAACGCATCCGCTTCATCCACCTCCT
                      ____________________________________________________________
consensus             TCTCGCCCGCATAAGCACTGCTACTTGGGCTTGGCAACGCATCCGCTTCATCCACCTCCT
 
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JMSF051H20+           CGGAATTGCTCCTCCAAATCAACGTACTGCTGCCAGCTCTGGATGAGCTGGCTTCGTCCA
JMSF016N09+                         CAAATCAACGTACTGCTGCCAGCTCTGGATGAGCTGGCTTCGTCCA
                      ____________________________________________________________
consensus             CGGAATTGCTCCTCCAAATCAACGTACTGCTGCCAGCTCTGGATGAGCTGGCTTCGTCCA
 
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JMSF051H20+           GAAAATTCCCAAAATTCGGCTCCTCCTCAGCACCCGGGTCTTCTGTTTCTATTTCATCAT
JMSF003C10+                                   CCTCAGCACCCGGGTCTTCTGTTTCTATTTCATCAT
JMSF016N09+           GAAAATTCCCAAAATTCGGCTCCTCCTCAGCACCCGGGTCTTCTGTTTCTATTTCATCAT
                      ____________________________________________________________
consensus             GAAAATTCCCAAAATTCGGCTCCTCCTCAGCACCCGGGTCTTCTGTTTCTATTTCATCAT
 
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JMSF051H20+           GAAACGATCCATTTCCAAGCTCATTCAACTGCGACGTTCCAGAGGCATCAAAATCCGTCT
JMSF003C10+           GAAACGATCCATTTCCAAGCTCATTCAACTGCGACGTTCCAGAGGCATCAAAATCCGTCT
JMSF016N09+           GAAACGATCCATTTCCAAGCTCATTCAACTGCGACGTTCCAGAGGCATCAAAATCCGTCT
                      ____________________________________________________________
consensus             GAAACGATCCATTTCCAAGCTCATTCAACTGCGACGTTCCAGAGGCATCAAAATCCGTCT
 
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JMSF051H20+           CTGACTCCGTTTCAGGGTAAGACATTGAAATGGAAGCTAGTTGATTCTCTATAGCATCCA
JMSF003C10+           CTGACTCCGTTTCAGGGTAAGACATTGAAATGGAAGCTAGTTGATTCTCTATAGCATCCA
JMSF016N09+           CTGACTCCGTTTCAGGGTAAGACATTGAAATGGAAGCTAGTTGATTCTCTATAGCATCCA
                      ____________________________________________________________
consensus             CTGACTCCGTTTCAGGGTAAGACATTGAAATGGAAGCTAGTTGATTCTCTATAGCATCCA
 
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JMSF051H20+           GAGACTGATCGATTAGATTGGGGGAAGGGTTAGGGTTAGGGTTGGGATCAGAGTCGTTAT
JMSF003C10+           GAGACTGATCGATTAGATTGGGGGAAGGGTTAGGGTTAGGGTTGGGATCAGAGTCGTTAT
JMSF001C15+                                          AGGGTTAGGGTTGGGATCAGAGTCGTTAT
JMSF016N09+           GAGACTGATCGATTAGATTGGGGGAAGGGTTAGGGTTAGGGTTGGGATCAGAGTCGTTAT
                      ____________________________________________________________
consensus             GAGACTGATCGATTAGATTGGGGGAAGGGTTAGGGTTAGGGTTGGGATCAGAGTCGTTAT
 
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JMSF051H20+           TTCCATCATTGTCGGATGATGCAGCAGCAGCCGCCGGCGACGAAGATGAATTCGAATCGG
JMSF003C10+           TTCCATCATTGTCGGATGATGCAGCAGCAGCCGCCGGCGACGAAGATGAATTCGAATCGG
JMSF001C15+           TTCCATCATTGTCGGATGATGCAGCAGCAGCCGCCGGCGACGAAGATGAATTCGAATCGG
JMSF016N09+           TTCCATCATTGTCGGATGATGCAGCAGCAGCCGCCGGCGACGAAGATGAATTCGAATCGG
                      ____________________________________________________________
consensus             TTCCATCATTGTCGGATGATGCAGCAGCAGCCGCCGGCGACGAAGATGAATTCGAATCGG
 
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JMSF051H20+           AGAGCATTGCGAGAAGATACTATTTTATGGCTTCTTCACTCTCTCTCCTATTTTATGGCT
JMSF003C10+           AGAGCATTGCGAGAAGATAC                                        
JMSF001C15+           AGAGCATTGCGAGAAGATACTATTTTATGGCTTCTTCACTCTCTCTCCTATTTTATGGCT
JMSF016N09+           AGAGCATTGCGAGAAGATACTATTTTATGGCTTCTTCACTCTCTCTCCTATTTTATGGCT
                      ____________________________________________________________
consensus             AGAGCATTGCGAGAAGATACTATTTTATGGCTTCTTCACTCTCTCTCCTATTTTATGGCT
 
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JMSF051H20+           TCTTCACTCTCTC                                               
JMSF001C15+           TCTTCACTCTCTC                                               
JMSF016N09+           TCTTCACTCTCTCTCACAGTCCTCTGCTACGTTTTCAACTTTTTGAACGTGGCCAAGCTC
                      ____________________________________________________________
consensus             TCTTCACTCTCTCTCACAGTCCTCTGCTACGTTTTCAACTTTTTGAACGTGGCCAAGCTC