Contig 006449:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF014G10Sequence557006449 (3)ref|XP_009624585.1|6e-26PREDICTED: bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic [773004222 (3)gb|AHF22108.1|1e-87bifunctional GTP cyclohydrolase II/34-dihydroxy-2-butanone 4-phosphate synthase
JMSF050F15Sequence698006449 (3)ref|XP_009624585.1|4e-69PREDICTED: bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic [741004222 (3)dbj|BAA08113.1|2e-113GTP cyclohydrolase II [Arabidopsis thaliana]
JMSF050O01Sequence586006449 (3)ref|XP_009624585.1|2e-43PREDICTED: bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic [771004222 (3)gb|AHF22108.1|3e-84bifunctional GTP cyclohydrolase II/34-dihydroxy-2-butanone 4-phosphate synthase

Alignment

This contig is upended


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JMSF050F15+ CCATCATACTCACACAGACAATTCCA
                      ____________________________________________________________
consensus CCATCATACTCACACAGACAATTCCA
 
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JMSF050F15+ GTCCCGTGCCTCACAATAAAGGCCATTGCTTCTGGCGTAACTTTCGATGCTGCCATTATT
                      ____________________________________________________________
consensus GTCCCGTGCCTCACAATAAAGGCCATTGCTTCTGGCGTAACTTTCGATGCTGCCATTATT
 
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JMSF050O01+ CCTCGTCATCCACAACCAGTACCATCCTCCCTTGGCGA
JMSF050F15+ AGATCTCCTTCGTTTTCTCGGTCCTCGTCATCCACAACCAGTACCATCTTCCCTTGGCGA
                      ____________________________________________________________
consensus AGATCTCCTTCGTTTTCTCGGTCCTCGTCATCCACAACCAGTACCATCTTCCCTTGGCGA
 
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JMSF050O01+ ATGTCTTCAATGGCATCTGGAATAGATGCAAAACCTTCTGTGGGCTCGTCCAAATCGAAT
JMSF050F15+ ATGTCTTCAATGGCATCTGGAATAGATGCAAAACCTTCTGTGGGCTCGTCCAAATCGAAT
JMSF014G10+ GCTCGTCCAAATCGAAT
                      ____________________________________________________________
consensus ATGTCTTCAATGGCATCTGGAATAGATGCAAAACCTTCTGTGGGCTCGTCCAAATCGAAT
 
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JMSF050O01+ TCATCAACCTCGGCAGGAAACCCGCTTGGTGTGGGGATGATATCCGCCACGAGTGTTCCA
JMSF050F15+ TCATCAACCTCGGCAGGAAACCCGCTTGGTGTGGGGATGATATCCGCCACGAGTGTTCCA
JMSF014G10+ TCATCAACCTCGGCAGGAAACCCGCTTGGTGTGGGGATGATATCCGCCACGAGTGTTCCA
                      ____________________________________________________________
consensus TCATCAACCTCGGCAGGAAACCCGCTTGGTGTGGGGATGATATCCGCCACGAGTGTTCCA
 
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JMSF050O01+ AAAGCTAAAGCATCAGCTTGTGTCTCGATTCCCGAGGACAGGTCATTGGCTATTGCACCA
JMSF050F15+ AAAGCTAAAGCATCAGCTTGTGTCTCGATTCCCGAGGACAGGTCATTGGCTATTGCACCA
JMSF014G10+ AAAGCTAAAGCATCAGCTTGTGTCTCGATTCCCGAGGACAGGTCATTGGCTATTGCACCA
                      ____________________________________________________________
consensus AAAGCTAAAGCATCAGCTTGTGTCTCGATTCCCGAGGACAGGTCATTGGCTATTGCACCA
 
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JMSF050O01+ TTGGAAGGAGACAGCGAATCACCCTGACCAGATAGCAATACCGATCTAGTCGTACTATCC
JMSF050F15+ TTGGAAGGAGACAGCGAATCACCCTGACCAGATAGCAATACCGATCTAGTCGTACTATCC
JMSF014G10+ TTGGAAGGAGACAGCGAATCACCCTGACCAGATAGCAATACCGATCTAGTCGTACTATCC
                      ____________________________________________________________
consensus TTGGAAGGAGACAGCGAATCACCCTGACCAGATAGCAATACCGATCTAGTCGTACTATCC
 
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JMSF050O01+ CTTTTAATACTGAAGGGCGCTTTAAGATTCAGCCAATTGAAAGACCTCGAAGGGAACCCC
JMSF050F15+ CTTTTAATACTGAAGGGCGCTTTAAGATTCAGCCAATTGAAAGACCTCGAAGGGAACCCC
JMSF014G10+ CTTTTAATACTGAAGGGCGCTTTAAGATTCAGCCAATTGAAAGACCTCGAAGGGAACCCC
                      ____________________________________________________________
consensus CTTTTAATACTGAAGGGCGCTTTAAGATTCAGCCAATTGAAAGACCTCGAAGGGAACCCC
 
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JMSF050O01+ TTGGTGGGATGGGGAGTTCCACCATTCAACAAGTTGAAGTTTTTCGATGCTTGGGAGCAA
JMSF050F15+ TTGGTGGGATGGGGAGTTCCACCATTCAACAAGTTGAAGTTTTTCGATGCTTGGGAGCAA
JMSF014G10+ TTGGTGGGATGGGGAGTTCCACCATTCAACAAGTTGAAGTTTTTCGATGCTTGGGAGCAA
                      ____________________________________________________________
consensus TTGGTGGGATGGGGAGTTCCACCATTCAACAAGTTGAAGTTTTTCGATGCTTGGGAGCAA
 
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JMSF050O01+ GAAAGAGCTGTTGAAGGGCAGGAAATGTTGATAGAAGCCATTTTCAAGACTGGGAAAAGG
JMSF050F15+ GAAAGAGCTGTTGAAGGGCAGGAAATGTTGATAGAAGCCATTTTCAAGACTGGGAAAAGG
JMSF014G10+ GAAAGAGCTGTTGAAGGGCAGGAAATGTTGATAGAAGCCATTTTCAAGACTGGGAAAAGG
                      ____________________________________________________________
consensus GAAAGAGCTGTTGAAGGGCAGGAAATGTTGATAGAAGCCATTTTCAAGACTGGGAAAAGG
 
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JMSF050O01+ CACAGATAGAAACGATGGATTTGGTGACCCTTTACCCGCAGGATGGAGTAAAGAAACTCG
JMSF050F15+ CACAGATAGAAACGATGGATTTGGTGACCCTTTACCCGCAGGATGGAGTAAAGAAACTCG
JMSF014G10+ CACAGATAGAAACGATGGATTTGGTGACCCTTTACCCGCAGGATGGAGTAAAGAAACTCG
                      ____________________________________________________________
consensus CACAGATAGAAACGATGGATTTGGTGACCCTTTACCCGCAGGATGGAGTAAAGAAACTCG
 
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JMSF050O01+ GATTCTCAATTGGATCACAGTTTTTGGGGAAGGGCACGAAGTTTCAAGAGTGGTTGCGGT
JMSF050F15+ GATTCTCAATTGGATCACAGTTTTTGGGGAAGGGCACGAAGTTTCAAGAGTGGTTGCGGT
JMSF014G10+ GATTCTCAATTGGATCACAGTTTTTGGGGAAGGGCACGAAGTTTCAAGAGTGGTTGCGGT
                      ____________________________________________________________
consensus GATTCTCAATTGGATCACAGTTTTTGGGGAAGGGCACGAAGTTTCAAGAGTGGTTGCGGT
 
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JMSF050O01+ GATCTTC
JMSF050F15+ GATCTTC
JMSF014G10+ GATCTTCAGGTAGAAAGCTCTGGCATACGGGTAGGTGGAGGTTCGCTGTTGTCTACTGTC
                      ____________________________________________________________
consensus GATCTTCAGGTAGAAAGCTCTGGCATACGGGTAGGTGGAGGTTCGCTGTTGTCTACTGTC