| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF001H05 | Sequence | 402 | 006435 (4) | ref|XP_009787103.1| | 1e-21 | PREDICTED: tryptophan--tRNA ligase, mitochondrial isoform X2 [Nicotiana sylvest | 741 | 008469 (3) | gb|KDP34172.1| | 6e-95 | hypothetical protein JCGZ_07743 [Jatropha curcas] |
| JMSF012D13 | Sequence | 391 | 006435 (4) | ref|XP_009603437.1| | 1e-08 | PREDICTED: tryptophan--tRNA ligase, mitochondrial isoform X2 [Nicotiana tomento | 779 | 008469 (3) | gb|AFK45558.1| | 6e-53 | unknown [Lotus japonicus] |
| JMSF016F14 | Sequence | 596 | 006435 (4) | ref|XP_009787103.1| | 4e-51 | PREDICTED: tryptophan--tRNA ligase, mitochondrial isoform X2 [Nicotiana sylvest | 764 | 001331 (2) | gb|KDP34172.1| | 3e-92 | hypothetical protein JCGZ_07743 [Jatropha curcas] |
| JMSF052K12 | Sequence | 659 | 006435 (4) | ref|XP_004253104.1| | 2e-67 | PREDICTED: tryptophan--tRNA ligase, mitochondrial [Solanum lycopersicum] | 859 | 001331 (2) | ref|XP_007137248.1| | 7e-36 | hypothetical protein PHAVU_009G1117000g, partial [Phaseolus vulgaris] gb|ESW0924 |
This contig is upended
. : . : . : . : . : . :
JMSF052K12+ TCATCCCCCGCCTTTCGTGATTTCTCTTTAAATTGAATCATTTTATTG
____________________________________________________________
consensus TCATCCCCCGCCTTTCGTGATTTCTCTTTAAATTGAATCATTTTATTG
. : . : . : . : . : . :
JMSF016F14+ GTGACAGCGCTCAAAAGCCACATCANTTCTACATGAGCAGCAACA
JMSF052K12+ AGCCAACCAATGGGTGTGACAGCGCTCAAAAGCCACATCAATTCTACATGAGCAGCAACA
____________________________________________________________
consensus AGCCAACCAATGGGTGTGACAGCGCTCAAAAGCCACATCAATTCTACATGAGCAGCAACA
. : . : . : . : . : . :
JMSF016F14+ TGAGACTGTACAAAAACTGAGGACTTAGAAGGGTCCACCCCACATGCTAAATAAAGAGCT
JMSF052K12+ TGAGACTGTACAAAAACTGAGGACTTAGAAGGGTCCACCCCACATGCTAAATAAAGAGCT
____________________________________________________________
consensus TGAGACTGTACAAAAACTGAGGACTTAGAAGGGTCCACCCCACATGCTAAATAAAGAGCT
. : . : . : . : . : . :
JMSF016F14+ GCTGTGTCTTTTGTTGCTTTTAGTAATTGTGGTGCATCATATGGCAAAGTTATCGCATGA
JMSF052K12+ GCTGTGTCTTTTGTTGCTTTTAGTAATTGTGGTGCATCATATGGCAAAGTTATCGCATGA
____________________________________________________________
consensus GCTGTGTCTTTTGTTGCTTTTAGTAATTGTGGTGCATCATATGGCAAAGTTATCGCATGA
. : . : . : . : . : . :
JMSF016F14+ AGGTCTACAATGAAGAAGAAAGTGTCATACTTATCCTGCAACTGAATCCAATTTTTAATG
JMSF001H05+ GAAAGTGTCATACTTATCCTGCAACTGAATCCAATTTTTAATG
JMSF052K12+ AGGTCTACAATGAAGAAGAAAGTGTCATACTTATCCTGCAACTGAATCCAATTTTTAATG
____________________________________________________________
consensus AGGTCTACAATGAAGAAGAAAGTGTCATACTTATCCTGCAACTGAATCCAATTTTTAATG
. : . : . : . : . : . :
JMSF016F14+ GCACCAAGATAATTCCCAAGGTGTATAGATCCCGTTGGCTGTACACCAGAGACTATTCTC
JMSF001H05+ GCACCAAGATAATTCCCAAGGTGTATAGATCCCGTTGGCTGTACACCAGAGACTATTCTC
JMSF052K12+ GCACCAAGATAATTCCCAAGGTGTATAGATCCCGTTGGCTGTACACCAGAGACTATTCTC
____________________________________________________________
consensus GCACCAAGATAATTCCCAAGGTGTATAGATCCCGTTGGCTGTACACCAGAGACTATTCTC
. : . : . : . : . : . :
JMSF016F14+ TTCTCAATGCCACAGCAAGCAGAGGTAACACCATGTTAACTTTGAGTGGGGGTCAACTTC
JMSF001H05+ TTCTCAATGCCACAGCAAGCAGAGGTAACACCATGTTAACTTTGAGTGGGGGTCAACTTC
JMSF052K12+ TTCTCAATGCCACAGCAAGCAGAGGTAACACCATGTTAACTTTGAGTGGGGGTCAACTTC
____________________________________________________________
consensus TTCTCAATGCCACAGCAAGCAGAGGTAACACCATGTTAACTTTGAGTGGGGGTCAACTTC
. : . : . : . : . : . :
JMSF016F14+ ATATTTTCCTTCAAGTTTAGGAGTAATGGCATGAAGAAAGGAATGTTTTACAGAGGTCGG
JMSF001H05+ ATATTTTCCTTCAAGTTTAGGAGTAATGGCATGAAGAAAGGAATGTTTTACAGAGGTCGG
JMSF052K12+ ATATTTTCCTTCAAGTTTAGGAGTAATGGCATGAAGAAAGGAATGTTTTACAGAGGTCGG
JMSF012D13+ TTCTTTACAGAGGTCGG
____________________________________________________________
consensus ATATTTTCCTTCAAGTTTAGGAGTAATGGCATGAAGAAAGGAATGTTTTACAGAGGTCGG
. : . : . : . : . : . :
JMSF016F14+ AGGATTCTCGGAAGCCAAAGGTTCGGAGACGGCGACGCTGCAACGGCACCGGAAACTTTG
JMSF001H05+ AGGATTCTCGGAAGCCAAAGGTTCGGAGACGGCGACGCTGCAACGGCACCGGAAACTTTG
JMSF052K12+ AGGATTCTCGGAAGCCAAAGGTTCGGAGACGGCGACGCTGCAACGGCACCGGAAACTTTG
JMSF012D13+ AGGATTCTCGAAAACCGAAGGTTCGGAGACGGCAACGCTGCAACGGCACCGGAAACTTTG
____________________________________________________________
consensus AGGATTCTCGGAAGCCAAAGGTTCGGAGACGGCGACGCTGCAACGGCACCGGAAACTTTG
. : . : . : . : . : . :
JMSF016F14+ AGCACGAATCTGAGGAATTAATCGTGGTCCCCTTAACACTGAAGAAGCGAAGCAAGGAGC
JMSF001H05+ AGCACGAATCTGAGGAATTAATCGTGGTCCCCTTAACACTGAAGAAGCGAAGCAAGGAGC
JMSF052K12+ AGCACGAATCTGAGGAATTAATCGTGGTCCCCTTAACACTGAAGAAGCGAAGCAAGGAGC
JMSF012D13+ AGCACGAATCTGAGGAATTAATCGTGGCCCCCTTAACACTGAAGAAGCGAAGCAAGGAGC
____________________________________________________________
consensus AGCACGAATCTGAGGAATTAATCGTGGTCCCCTTAACACTGAAGAAGCGAAGCAAGGAGC
. : . : . : . : . : . :
JMSF016F14+ AGTATTGCTGAGGATAAGGAGATGGGAGAGAAGAGAGCGTCCCATTGCTGCTGTGGCCTG
JMSF001H05+ AGTATTGCTGAGGATAAGGAGATGGGAGAGAAGAGAGCGTCCCATTGCTGCTG
JMSF052K12+ AGTATTGCTGAGGATAAGGAGATGGGAGAGAAGAGAGCGTCCCATTGCTGCTGTGGCCTG
JMSF012D13+ AGTATTGTTGAGGATAAGGAGATGGGAGAGAAGAGAGCGTCCCATTGATGCTGTGGCCTC
____________________________________________________________
consensus AGTATTGCTGAGGATAAGGAGATGGGAGAGAAGAGAGCGTCCCATTGCTGCTGTGGCCTG
. : . : . : . : . : . :
JMSF016F14+ TGAGCTCG
JMSF052K12+ TGAGCTCG
JMSF012D13+ CGAATTCAGGAGTTCGATGCTGGCCTTTAGAGAGCTCTATTTGGACTTCTTCAAACTAGT
____________________________________________________________
consensus TGAGCTCGGGAGTTCGATGCTGGCCTTTAGAGAGCTCTATTTGGACTTCTTCAAACTAGT
. : . : . : . : . : . :
JMSF012D13+ TTCAACGTCATCTCTTCTCTCTCAGCTAGATCCCTCTCCGGCGGCGGACGGCGATAACTG
____________________________________________________________
consensus TTCAACGTCATCTCTTCTCTCTCAGCTAGATCCCTCTCCGGCGGCGGACGGCGATAACTG
. : . : . : . : . : . :
JMSF012D13+ ACTCGGAGATTTGGATATTTTGAAATTGTGGCGTTCGATTGCGGGAACGACGGACGAGTC
____________________________________________________________
consensus ACTCGGAGATTTGGATATTTTGAAATTGTGGCGTTCGATTGCGGGAACGACGGACGAGTC