| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFN010J02 | Sequence | 627 | 006433 (4) | ref|XP_009630394.1| | 3e-79 | PREDICTED: stress enhanced protein 2, chloroplastic [Nicotiana tomentosiformis] | |||||
| JMFN025H19 | Sequence | 537 | 006433 (4) | ref|XP_009630394.1| | 2e-58 | PREDICTED: stress enhanced protein 2, chloroplastic [Nicotiana tomentosiformis] | |||||
| JMSF011P13 | Sequence | 225 | 006433 (4) | ref|XP_007048109.1| | 6e-05 | Stress enhanced protein 2 [Theobroma cacao] gb|EOX92266.1| Stress enhanced prote | 713 | 006433 (4) | ref|XP_009630394.1| | 3e-72 | PREDICTED: stress enhanced protein 2, chloroplastic [Nicotiana tomentosiformis] |
This contig is upended
. : . : . : . : . : . :
rJMSF011P13- TTTGTATGATTATATATACAAGCTAAGCAAAGCATGCAGGAGTACTATAAGCT
____________________________________________________________
consensus TTTGTATGATTATATATACAAGCTAAGCAAAGCATGCAGGAGTACTATAAGCT
. : . : . : . : . : . :
rJMSF011P13- TCTATTTGTATAATTAATAGCAAAATTTTACGCCAAACATACATACAGCTTTAGTTTACG
____________________________________________________________
consensus TCTATTTGTATAATTAATAGCAAAATTTTACGCCAAACATACATACAGCTTTAGTTTACG
. : . : . : . : . : . :
rJMSF011P13- GGGGCTTTGGGTGAGGATGGAATCCATCCATCATATCAAAAGAGGTTTTGAATTGGGTGA
____________________________________________________________
consensus GGGGCTTTGGGTGAGGATGGAATCCATCCATCATATCAAAAGAGGTTTTGAATTGGGTGA
. : . : . : . : . : . :
rJMSF011P13- TGAAGGAACACCGTAGCGCAGCGCGCGCAGCTATCACCGGAGACTGGTAAATTTTGTTTG
____________________________________________________________
consensus TGAAGGAACACCGTAGCGCAGCGCGCGCAGCTATCACCGGAGACTGGTAAATTTTGTTTG
. : . : . : . : . : . :
rJMSF011P13- AAGTTTTCAGATTTCGTCAGTCCAATCATTGTGATCGGTGTCGTAGAAGATACCGTCGAC
JMFN010J02+ CGTCAGTCCAATCATTGTGATCGGTGTCGTAGAAGATACCGTCGAC
____________________________________________________________
consensus AAGTTTTCAGATTTCGTCAGTCCAATCATTGTGATCGGTGTCGTAGAAGATACCGTCGAC
. : . : . : . : . : . :
rJMSF011P13- GATCTGATCGATGAGCGAATCGATGAGGGTGTTGCAGCCCAGCGAGAAGATCCGGTCCAC
JMFN010J02+ GATCTGATCGATGAGCGAATCGATGAGGGTGTTGCAGCCCAGCGAGAAGATCCGGTCCAC
JMFN025H19+ GATCCGGTCCAC
____________________________________________________________
consensus GATCTGATCGATGAGCGAATCGATGAGGGTGTTGCAGCCCAGCGAGAAGATCCGGTCCAC
. : . : . : . : . : . :
rJMSF011P13- TCTGCTACGGGCGCTGGAAAACCAGGCAAAAATGGCGGCACAACTCACGGCTCCTAAGCA
JMFN010J02+ TCTGCTACGGGCGCTGGAAAACCAGGCAAAAATGGCGGCACAACTCACGGCTCCTAAGCA
JMFN025H19+ TCTGCTACGGGCGCTGGAAAACCAGGCAAAAATGGCGGCACAACTCACGGCTCCTAAGCA
____________________________________________________________
consensus TCTGCTACGGGCGCTGGAAAACCAGGCAAAAATGGCGGCACAACTCACGGCTCCTAAGCA
. : . : . : . : . : . :
rJMSF011P13- AACCCCCGCGGCTTCAGCGATCCCCTGTAACTCCATCTTCCGGAACAATGAATTTCCGGT
JMFN010J02+ AACCCCCGCGGCTTCAGCGATCCCCTGTAACTCCATCTTCCGGAACAATGAATTTCCGGT
JMFN025H19+ AACCCCCGCGGCTTCAGCGATCCCCTGTAACTCCATCTTCCGGAACAATGAATTTCCGGT
____________________________________________________________
consensus AACCCCCGCGGCTTCAGCGATCCCCTGTAACTCCATCTTCCGGAACAATGAATTTCCGGT
. : . : . : . : . : . :
rJMSF011P13- CACAACCTCCGTCGTCACCGTCGCTGCAAACACTATCATGGCGAGACGGCCGGAAATGAT
JMFN010J02+ CACAACCTCCGTCGTCACCGTCGCTGCAAACACTATCATGGCGAGACGGCCGGAAATGAT
JMFN025H19+ CACAACCTCCGTCGTCACCGTCGCTGCAAACACTATCATGGCGAGACGGCCGGAAATGAT
____________________________________________________________
consensus CACAACCTCCGTCGTCACCGTCGCTGCAAACACTATCATGGCGAGACGGCCGGAAATGAT
. : . : . : . : . : . :
rJMSF011P13- CTCAAAATCCTGGCTTTTCTTGGAGCTCTCTATGTAATCCGACAGCGTTGCGAAAAACGG
JMFN010J02+ CTCAAAATCCTGGCTTTTCTTGGAGCTCTCTATGTAATCCGACAGCGTTGCGAAAAACGG
JMFN025H19+ CTCAAAATCCTGGCTTTTCTTGGAGCTCTCTATGTAATCCGACAGCGTTGCGAAAAACGG
____________________________________________________________
consensus CTCAAAATCCTGGCTTTTCTTGGAGCTCTCTATGTAATCCGACAGCGTTGCGAAAAACGG
. : . : . : . : . : . :
rJMSF011P13- GGAGACCTCCTCGTCGTCGTCTCCGGCGGCCACGGAACCGGTCTTGGTCTTGATGACTCC
JMFN010J02+ GGAGACCTCCTCGTCGTCGTCTCCGGCGGCCACGGAACCGGTCTTGGTCTTGATGACTCC
JMFN025H19+ GGAGACCTCCTCGTCGTCGTCTCCGGCGGCCACGGAACCGGTCTTGGTCTTGATGACTCC
____________________________________________________________
consensus GGAGACCTCCTCGTCGTCGTCTCCGGCGGCCACGGAACCGGTCTTGGTCTTGATGACTCC
. : . : . : . : . : . :
rJMSF011P13- GACGGGATCAGACCCAAACGATCTCAAAGTACACATCCGTGGCTGTAACACAATTTTCCC
JMFN010J02+ GACGGGATCAGACCCAAACGATCTCAAAGTACACATCCGTGGCTGTAACACAATTTTCCC
JMFN025H19+ GACGGGATCAGACCCAAACGATCTCAAAGTACACATCCGTGGCTGTAACACAATTTTCCC
JMSF011P13+ AAACGATCTCAAAGTACACATCCGTGGCTGTAACACAATTTTCCC
____________________________________________________________
consensus GACGGGATCAGACCCAAACGATCTCAAAGTACACATCCGTGGCTGTAACACAATTTTCCC
. : . : . : . : . : . :
JMFN010J02+ CTCCACCGCCACTCTCACCTTATTATTATAATTGGGAACGGAAGCCGCTTCCGCCTTCTG
JMFN025H19+ CTCCACCGCCACTCTCACCTTATTATTATAATTGGGAACGGAAGCCGCTTCCGCCTTCTG
JMSF011P13+ CTCCACCGCCACTCTCACCTTATTATTATAATTGGGAACGGAAGCCGCTTCCGCCTTCTG
____________________________________________________________
consensus CTCCACCGCCACTCTCACCTTATTATTATAATTGGGAACGGAAGCCGCTTCCGCCTTCTG
. : . : . : . : . : . :
JMFN010J02+ GAGCAGACGCGGCGGTGCCTGCGACTTCAACTCACAGACCACCGGGCGAGGCACCAAGGC
JMFN025H19+ GAGCAGACGCGGCGGTGCCTGCGACTTCAACTCACAGACCACCGGGCGAGGCACCAAGGC
JMSF011P13+ GAGCAGACGCGGCGGTGCCTGCGACTTCAACTCACAGACCACCGGGCGAGGCACCAAGGC
____________________________________________________________
consensus GAGCAGACGCGGCGGTGCCTGCGACTTCAACTCACAGACCACCGGGCGAGGCACCAAGGC
. : . : . : . : . : . :
JMFN010J02+ CATGGATCGGATCGGATCGGAGAAAACAAAGCTAAGAGAG
JMFN025H19+ CATGGATCGGATCGGATCGGAGAAAACAAAGCTAAGAGAG
JMSF011P13+ CATGGATCGGATCGGATCGGAGAAAACAAAGCTAAGAGAGATGGAGAAGATGGTGCGGGC
____________________________________________________________
consensus CATGGATCGGATCGGATCGGAGAAAACAAAGCTAAGAGAGATGGAGAAGATGGTGCGGGC