Contig 006428:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF025N17-                                                    ACCTATCTATCTGCAATT
                      ____________________________________________________________
consensus                                                       ACCTATCTATCTGCAATT
 
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rJMSF025N17-          CCCAATGATGAAAAAATATAGCTTTACTGTTGATCACATTACATTGTTGTAGCAAAAGCA
                      ____________________________________________________________
consensus             CCCAATGATGAAAAAATATAGCTTTACTGTTGATCACATTACATTGTTGTAGCAAAAGCA
 
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rJMSF025N17-          GGGATTTATACAGAGATTTGGGCATTTAGATCAGTTGAAACTATCGTGTTCGTCTTCGTC
                      ____________________________________________________________
consensus             GGGATTTATACAGAGATTTGGGCATTTAGATCAGTTGAAACTATCGTGTTCGTCTTCGTC
 
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rJMSF025N17-          CATCACCTTGCAGCTTTATCAATTCCCAGAACTCTTCATCACTAGTCTTGAGCAAGAAGG
                      ____________________________________________________________
consensus             CATCACCTTGCAGCTTTATCAATTCCCAGAACTCTTCATCACTAGTCTTGAGCAAGAAGG
 
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rJMSF025N17-          GCAAAGGAAGATGAACACCCCTTCTCACAGCCTCCATATGCCTGGGTTTAATCCGATTCT
                      ____________________________________________________________
consensus             GCAAAGGAAGATGAACACCCCTTCTCACAGCCTCCATATGCCTGGGTTTAATCCGATTCT
 
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rJMSF025N17-          CCAAGCTGAAACTGAAGTACTGAGGAAACTCTTTCAACTCTTCCAACTTCCCCTCCATTT
JMSF025N17+                                                 TCTTCCAACTTCCCCTCCATTT
                      ____________________________________________________________
consensus             CCAAGCTGAAACTGAAGTACTGAGGAAACTCTTTCAACTCTTCCAACTTCCCCTCCATTT
 
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rJMSF025N17-          CATTGGCAAAGTAGTGAAATTTGGGCTTGAAATTGTTGTCAATGCTGAAAGTGAACAGCC
JMSF025N17+           CATTGGCAAAGTAGTGAAATTTGGGCTTGAAATTGTTGTCAATGCTGAAAGTGAACAGCC
                      ____________________________________________________________
consensus             CATTGGCAAAGTAGTGAAATTTGGGCTTGAAATTGTTGTCAATGCTGAAAGTGAACAGCC
 
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rJMSF025N17-          CCGGGCACCTCAAAACCATCCCCACAGCATCAGTTCTTGAAAACCCCAAGCTGACCAGAT
JMSF025N17+           CCGGGCACCTCAAAACCATCCCCACAGCATCAGTTCTTGAAAACCCCAAGCTGACCAGAT
                      ____________________________________________________________
consensus             CCGGGCACCTCAAAACCATCCCCACAGCATCAGTTCTTGAAAACCCCAAGCTGACCAGAT
 
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rJMSF025N17-          AGTTGAGCTTAGGAATCAGTGTGTTCTCCACGCTGGAAACCAAGAGAATGGGGTCTTGAT
JMSF025N17+           AGTTGAGCTTAGGAATCAGTGTGTTCTCCACGCTGGAAACCAAGAGAATGGGGTCTTGAT
                      ____________________________________________________________
consensus             AGTTGAGCTTAGGAATCAGTGTGTTCTCCACGCTGGAAACCAAGAGAATGGGGTCTTGAT
 
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rJMSF025N17-          AAGCCAGGGAATGCAGATCTCTGAACCCAAGTCTCTGGAGATAGAACAAGGCAGGTTTGA
JMSF025N17+           AAGCCAGGGAATGCAGATCTCTGAACCCAAGTCTCTGGAGATAGAACAAGGCAGGTTTGA
                      ____________________________________________________________
consensus             AAGCCAGGGAATGCAGATCTCTGAACCCAAGTCTCTGGAGATAGAACAAGGCAGGTTTGA
 
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rJMSF025N17-          GCTGGTCTGGGACACTGGAAATGAGCAATCTTGGGCATTTGTTGATCACTTTCCTGAAGT
JMSF025N17+           GCTGGTCTGGGACACTGGAAATGAGCAATCTTGGGCATTTGTTGATCACTTTCCTGAAGT
                      ____________________________________________________________
consensus             GCTGGTCTGGGACACTGGAAATGAGCAATCTTGGGCATTTGTTGATCACTTTCCTGAAGT
 
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rJMSF025N17-          CATTGTCTGGGACATTAAGGTCTGAGGAGAGGAAAGTGAAGACAGGGATAAGGTGAGATT
JMSF025N17+           CATTGTCTGGGACATTAAGGTCTGAGGAGAGGAAAGTGAAGACAGGGATAAGGTGAGATT
JMSF011G03+                                CTGAGGAGAGGAAAGTGAAGACAGGGATAAGGTGAGATT
                      ____________________________________________________________
consensus             CATTGTCTGGGACATTAAGGTCTGAGGAGAGGAAAGTGAAGACAGGGATAAGGTGAGATT
 
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rJMSF025N17-          TGATGTCTGA                                                  
JMSF025N17+           TGATGTCTGAGGTTAGGATGTTGGGGCACATTCCTATGATTCTCCCCAGGTCTTTCTGGT
JMSF011G03+           TGATGTCTGAGGTTAGGATGTTGGGGCACATTCCTATGATTCTCCCCAGGTCTTTCTGGT
                      ____________________________________________________________
consensus             TGATGTCTGAGGTTAGGATGTTGGGGCACATTCCTATGATTCTCCCCAGGTCTTTCTGGT
 
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JMSF025N17+           GGATGCCTTTGGACTGCAAGAAAGTGATGATGGAGTGGATGGAGTGAAGGGGGGCTGTGT
JMSF011G03+           GGATGCCTTTGGACTGCAAGAAAGTGATGATGGAGTGGATGGAGTGAAGGGGGGCTGTGT
                      ____________________________________________________________
consensus             GGATGCCTTTGGACTGCAAGAAAGTGATGATGGAGTGGATGGAGTGAAGGGGGGCTGTGT
 
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JMSF025N17+           GGAGAGAGGGGTTCTGGGAGAGGGCTCTCCCAGAATCAACACCCATGATTTCTAGGGACA
JMSF011G03+           GGAGAGAGGGGTTCTGGGAGAGGGCTCTCCCAGAATCAACACCCATGATTTCTAGGGACA
                      ____________________________________________________________
consensus             GGAGAGAGGGGTTCTGGGAGAGGGCTCTCCCAGAATCAACACCCATGATTTCTAGGGACA
 
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JMSF025N17+           GGATTTTCTCCTTGAACTGGTGGGAGATGTTCTTGTGGGTTGGTTGGTAGAGTGGGTGTT
JMSF011G03+           GGATTTTCTCCTTGAACTGGTGGGAGATGTTCTTGTGGGTTGGTTGGTAGAGTGGGTGTT
                      ____________________________________________________________
consensus             GGATTTTCTCCTTGAACTGGTGGGAGATGTTCTTGTGGGTTGGTTGGTAGAGTGGGTGTT
 
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JMSF025N17+           TG                                                          
JMSF011G03+           TGTGGAGGAGAGTTTTGGGTTTTGAGGATAAGAGGTTATTGTTATTGTTGTTGTTGGATA
                      ____________________________________________________________
consensus             TGTGGAGGAGAGTTTTGGGTTTTGAGGATAAGAGGTTATTGTTATTGTTGTTGTTGGATA
 
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JMSF011G03+           GGTGGTCTGAGGAGCATGAAGAGAAACAACAATAGAAGGCTGTTGCTGACATTTTCTTTC
                      ____________________________________________________________
consensus             GGTGGTCTGAGGAGCATGAAGAGAAACAACAATAGAAGGCTGTTGCTGACATTTTCTTTC