| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF007J18 | Sequence | 377 | 006396 (3) | emb|CDP13984.1| | 1e-12 | unnamed protein product [Coffea canephora] | 726 | 008159 (5) | ref|XP_004238178.1| | 2e-57 | PREDICTED: sorting and assembly machinery component 50 homolog B-like [Solanum |
| JMSF016O22 | Sequence | 285 | 006396 (3) | 808 | 008159 (5) | ref|XP_004238178.1| | 3e-72 | PREDICTED: sorting and assembly machinery component 50 homolog B-like [Solanum | |||
| JMSF018J24 | Sequence | 438 | 006396 (3) | ref|XP_006354915.1| | 1e-26 | PREDICTED: sorting and assembly machinery component 50 homolog B-like [Solanum | 725 | 008159 (5) | ref|XP_004238178.1| | 2e-57 | PREDICTED: sorting and assembly machinery component 50 homolog B-like [Solanum |
This contig is upended
. : . : . : . : . : . :
JMSF018J24+ CNGGCATCGAGAGTGATCTTAACGGAATCGAA
____________________________________________________________
consensus CNGGCATCGAGAGTGATCTTAACGGAATCGAA
. : . : . : . : . : . :
JMSF018J24+ AATTCCGAGCTGCTGAAGCCGAGCATTGGCAATACTGGCGGCCTGGAGCAACTCCTGGAC
JMSF007J18+ TGGAGCAACTCCTGGAC
____________________________________________________________
consensus AATTCCGAGCTGCTGAAGCCGAGCATTGGCAATACTGGCGGCCTGGAGCAACTCCTGGAC
. : . : . : . : . : . :
JMSF018J24+ CGTAGAGGCGGACTTCAAGACCTCCAACTCGGCTTCGATGAGGGAATCTTTAGTATTAGC
JMSF007J18+ CGTAGAGGCGGACTTCAAGACCTCCAACTCGGCTTCGATGAGGGAATCTTTAGTATTAGC
____________________________________________________________
consensus CGTAGAGGCGGACTTCAAGACCTCCAACTCGGCTTCGATGAGGGAATCTTTAGTATTAGC
. : . : . : . : . : . :
JMSF016O22+ TTTCTCTTGATCAGCACGCTGTGGACTCGCACCGGCACTCCCCGACTCGACAATTGCCG
JMSF018J24+ GTTTCTCTTGATCAGCACGCTGTGGACTCGCACCGGCACTCCCCGACTCGACAATTGCCG
JMSF007J18+ GTTTCTCTTGATCAGCACGCTGTGGACTCGCACCGGCACTCCCCGACTCGACAATTGCCG
____________________________________________________________
consensus GTTTCTCTTGATCAGCACGCTGTGGACTCGCACCGGCACTCCCCGACTCGACAATTGCCG
. : . : . : . : . : . :
JMSF016O22+ GACCAGGCTCTCCATCCTCGCCCTGCCCATCGGGATTCCGGCATCTTGGCCGAGCGTCTC
JMSF018J24+ GACCAGGCTCTCCATCCTCGCCCTGCCCATCGGGATTCCGGCATCTTGGCCGAGCGTCTC
JMSF007J18+ GACCAGGCTCTCCATCCTCGCCCTGCCCATCGGGATTCCGGCATCTTGGCCGAGCGTCTC
____________________________________________________________
consensus GACCAGGCTCTCCATCCTCGCCCTGCCCATCGGGATTCCGGCATCTTGGCCGAGCGTCTC
. : . : . : . : . : . :
JMSF016O22+ TAGTTCCTCATCATCATCATCGTCGTCGTCATCATCATCATCATCTTCCTCTTCGTCGAA
JMSF018J24+ TAGTTCCTCATCATCATCATCGTCGTCGTCATCATCATCATCATCTTCCTCTTCGTCGAA
JMSF007J18+ TAGTTCCTCATCATCATCATCGTCGTCGTCATCATCATCATCATCTTCCTCTTCGTCGAA
____________________________________________________________
consensus TAGTTCCTCATCATCATCATCGTCGTCGTCATCATCATCATCATCTTCCTCTTCGTCGAA
. : . : . : . : . : . :
JMSF016O22+ TTCTTCGTACTCATCGTCGGCGACGGCAGAGTGGATCGGCTCCTTTTCATTTTCCAGTGA
JMSF018J24+ TTCTTCGTACTCATCGTCGGCGACGGCAGAGTGGATCGGCTCCTTTTCATTTTCCAGTGA
JMSF007J18+ TTCTTCGTACTCATCGTCGGCGACGGCAGAGTGGATCGGCTCCTTTTCATTTTCCAGTGA
____________________________________________________________
consensus TTCTTCGTACTCATCGTCGGCGACGGCAGAGTGGATCGGCTCCTTTTCATTTTCCAGTGA
. : . : . : . : . : . :
JMSF016O22+ TGAGATAGCCATTGATTAACCTTACTTCCGGTAGGTTTTTCCG
JMSF018J24+ TGAGATAGCCATTGATTAACCTTACTTCCGGTAGGTTTTTCCG
JMSF007J18+ TGAGATAGCCATTGATTAACCTTACTTCCGGTAGGTTTTTCCGTTGAGGTTTGCAGGATC
____________________________________________________________
consensus TGAGATAGCCATTGATTAACCTTACTTCCGGTAGGTTTTTCCGTTGAGGTTTGCAGGATC