Contig 006390:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF006L19Sequence308006390 (3)
JMSF014F14Sequence512006390 (3)ref|XP_009764762.1|4e-26PREDICTED: protein VAC14 homolog [Nicotiana sylvestris]813001319 (2)ref|XP_009797957.1|1e-39PREDICTED: protein VAC14 homolog isoform X1 [Nicotiana sylvestris]
JMSF017M08Sequence484006390 (3)ref|XP_006355062.1|2e-16PREDICTED: protein VAC14 homolog [Solanum tuberosum]768001319 (2)ref|XP_009797957.1|4e-38PREDICTED: protein VAC14 homolog isoform X1 [Nicotiana sylvestris]

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF014F14+ TTCCGGTG
                      ____________________________________________________________
consensus TTCCGGTG
 
. : . : . : . : . : . :
JMSF014F14+ ATTTGCTTGGGGAGAGTAGGTAAACTCATGGGTCAACAAATGGATCACGGCATTAATCTT
JMSF017M08+ AAATGGATCACGGCATTAATCTT
                      ____________________________________________________________
consensus ATTTGCTTGGGGAGAGTAGGTAAACTCATGGGTCAACAAATGGATCACGGCATTAATCTT
 
. : . : . : . : . : . :
JMSF014F14+ GTCGTGATCAGCCGCCGCTACCAATTGCTTCACAATCCCTTCCACCTCGAGAGCCGCATT
JMSF017M08+ GTCGTGATCAGCCGCCGCTACCAATTGCTTCACAATCCCTTCCACCTCGAGAGCCGCATT
                      ____________________________________________________________
consensus GTCGTGATCAGCCGCCGCTACCAATTGCTTCACAATCCCTTCCACCTCGAGAGCCGCATT
 
. : . : . : . : . : . :
JMSF014F14+ CTTGCGCTTCTCGTAGAGCTTATCGGAGATGCTCCTCAGAACCACAGACGGGATCACAGA
JMSF017M08+ CTTGCGCTTCTCGTAGAGCTTATCGGAGATGCTCCTCAGAACCACAGACGGGATCACAGA
                      ____________________________________________________________
consensus CTTGCGCTTCTCGTAGAGCTTATCGGAGATGCTCCTCAGAACCACAGACGGGATCACAGA
 
. : . : . : . : . : . :
JMSF014F14+ CGACGCCTTCGCAGTGGACATAGCCCCCCAAAAAAATGCCTACAAAACCCTAGAGAGAAA
JMSF017M08+ CGACGCCTTCGCAGTGGACATAGCCCCCCAAAAAAATGCCTACAAAACCCTAGAGAGAAA
                      ____________________________________________________________
consensus CGACGCCTTCGCAGTGGACATAGCCCCCCAAAAAAATGCCTACAAAACCCTAGAGAGAAA
 
. : . : . : . : . : . :
JMSF014F14+ ATCAAATCCGCTTCCTGATCTTCTCTTGCAGGAACCGAAACATCCCTTCGTCCCCAATCT
JMSF017M08+ ATCAAATCCGCTTCCTGATCTTCTCTTGCAGGAACCGAAACATCCCTTCGTCCCCAATCT
JMSF006L19+ CCCAATCT
                      ____________________________________________________________
consensus ATCAAATCCGCTTCCTGATCTTCTCTTGCAGGAACCGAAACATCCCTTCGTCCCCAATCT
 
. : . : . : . : . : . :
JMSF014F14+ ACGTAGTCATATACACATGTAGAAAATAGAAGCACGTAACAGTGCGGGATCGAGGATTGA
JMSF017M08+ ACGTAGTCATATACACATGTAGAAAATAGAAGCACGTAACAGTGCGGGATCGAGGATTGA
JMSF006L19+ ACGTAGTCATATACACATGTAGAAAATAGAAGCACGTAACAGTGCGGGATCGAGGATTGA
                      ____________________________________________________________
consensus ACGTAGTCATATACACATGTAGAAAATAGAAGCACGTAACAGTGCGGGATCGAGGATTGA
 
. : . : . : . : . : . :
JMSF014F14+ TTAAAATTTCCCAAAAATGATTGATTGATTGATTGATTGAAAAATCGAAATTTCTTTGTT
JMSF017M08+ TTAAAATTTCCCAAAAATGATTGATTGATTGATTGATTGAAAAATCGAAATTTCTTTGTT
JMSF006L19+ TTAAAATTTCCCAAAAATGATTGATTGATTGATTGATTGAAAAATCGAAATTTCTTTGTT
                      ____________________________________________________________
consensus TTAAAATTTCCCAAAAATGATTGATTGATTGATTGATTGAAAAATCGAAATTTCTTTGTT
 
. : . : . : . : . : . :
JMSF014F14+ ATATTTTGCTTTTGGTTTTTGTGTTTGTTCTGATATGGAAAGAAAGAGACGGAGAGGGAG
JMSF017M08+ ATATTTTGCTTTTGGTTTTTGTGTTTGTTCTGATATGGAAAGAAAGAGACGGAGAGGGAG
JMSF006L19+ ATATTTTGCTTTTGGTTTTTGTGTTTGTTCTGATATGGAAAGAAAGAGACGGAGAGGGAG
                      ____________________________________________________________
consensus ATATTTTGCTTTTGGTTTTTGTGTTTGTTCTGATATGGAAAGAAAGAGACGGAGAGGGAG
 
. : . : . : . : . : . :
JMSF014F14+ AAGAACAGTGCGCGATTTTTCTC
JMSF017M08+ AAGAACAGTGCGCGATTTTTCTCAAGGTACGAGAAG
JMSF006L19+ AAGAACAGTGCGCGATTTTTCTCAAGGTACGAGAAGTCGCAGAAGAGGCTGCTGCGTTCT
                      ____________________________________________________________
consensus AAGAACAGTGCGCGATTTTTCTCAAGGTACGAGAAGTCGCAGAAGAGGCTGCTGCGTTCT
 
. : . : . : . : . : . :
JMSF006L19+ CTCTAACGGTTCAAAACTTTGATGGCCAGCGACGGCGTGACATGTGAAGCTGTAACCTAA
                      ____________________________________________________________
consensus CTCTAACGGTTCAAAACTTTGATGGCCAGCGACGGCGTGACATGTGAAGCTGTAACCTAA