| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF009A03 | Sequence | 489 | 006380 (5) | ref|XP_009798717.1| | 174 | PREDICTED: uncharacterized protein LOC104244894 [Nicotiana sylvestris] | 671 | 013809 (4) | ref|XP_007049600.1| | 1e-50 | Uncharacterized protein isoform 1 [Theobroma cacao] gb|EOX93757.1| Uncharacteriz |
| JMFF043L18 | Sequence | 656 | 006380 (5) | ref|XP_009798717.1| | 274 | PREDICTED: uncharacterized protein LOC104244894 [Nicotiana sylvestris] | 571 | 013809 (4) | ref|XP_011080534.1| | 2e-24 | PREDICTED: uncharacterized protein LOC105163773 isoform X1 [Sesamum indicum] |
| JMSF005L01 | Sequence | 406 | 006380 (5) | ref|XP_009798717.1| | 119 | PREDICTED: uncharacterized protein LOC104244894 [Nicotiana sylvestris] | |||||
| JMSF025J16 | Sequence | 668 | 006380 (5) | ref|XP_009798717.1| | 270 | PREDICTED: uncharacterized protein LOC104244894 [Nicotiana sylvestris] | 762 | 013809 (4) | ref|XP_007049600.1| | 1e-70 | Uncharacterized protein isoform 1 [Theobroma cacao] gb|EOX93757.1| Uncharacteriz |
| JMSF041G16 | Sequence | 711 | 006380 (5) | ref|XP_009798717.1| | 295 | PREDICTED: uncharacterized protein LOC104244894 [Nicotiana sylvestris] | 653 | 013809 (4) | ref|XP_007049600.1| | 2e-63 | Uncharacterized protein isoform 1 [Theobroma cacao] gb|EOX93757.1| Uncharacteriz |
This contig is upended
. : . : . : . : . : . :
JMSF041G16+ TNTAGAAGATCATCAGCNTGGTTTGNTATATCATTTAGATTAGCCCCAGGAAGATGA
____________________________________________________________
consensus TNTAGAAGATCATCAGCNTGGTTTGNTATATCATTTAGATTAGCCCCAGGAAGATGA
. : . : . : . : . : . :
JMSF041G16+ ACTTTTGTGCCATTTTCACTNTTAAAAACTCCACCACCTGCAGNTACTCGCNTGAGTAAT
JMFF043L18+ CCACCTGCAGCTACTCGCCTGAGTAAT
JMSF025J16+ CCACCTGCAGCTACTCGCCTGAGTAAT
____________________________________________________________
consensus ACTTTTGTGCCATTTTCACTNTTAAAAACTCCACCACCTGCAGCTACTCGCCTGAGTAAT
. : . : . : . : . : . :
JMSF041G16+ TCATGTCTGCTTTCTTTCTGGGGAGTTCTGCAGAGTAGGCCAACAACTTGAACATGTGGG
JMFF043L18+ TCATGTCTGCTTTCTTTCTGGGGAGTTCTGCAGAGTAGGCCAACAACTTGAACATGTGGG
JMSF025J16+ TCATGTCTGCTTTCTTTCTGGGGAGTTCTGCAGAGTAGGCCAACAACTTGAACATGTGGG
____________________________________________________________
consensus TCATGTCTGCTTTCTTTCTGGGGAGTTCTGCAGAGTAGGCCAACAACTTGAACATGTGGG
. : . : . : . : . : . :
JMSF041G16+ GGGCATTTTTTAGTTAGATGAGATAACACAGTCTCCTTGACCACCTCCAAGAGTGACTTG
JMFF043L18+ GGGCATTTTTTAGTTAGATGAGATAACACAGTCTCCTTGACCACCTCCAAGAGTGACTTG
JMSF025J16+ GGGCATTTTTTAGTTAGATGAGATAACACAGTCTCCTTGACCACCTCCAAGAGTGACTTG
JMFF009A03+ GAGTGACTTG
____________________________________________________________
consensus GGGCATTTTTTAGTTAGATGAGATAACACAGTCTCCTTGACCACCTCCAAGAGTGACTTG
. : . : . : . : . : . :
JMSF041G16+ CGCTTCTCATCCTGATCCTTTTCAGCAATCTGAATCATGTAATCAAGGGCCATCATAAAC
JMFF043L18+ CGCTTCTCATCCTGATCCTTTTCAGCAATCTGAATCATGTAATCAAGGGCCATCATAAAC
JMSF025J16+ CGCTTCTCATCCTGATCCTTTTCAGCAATCTGAATCATGTAATCAAGGGCCATCATAAAC
JMFF009A03+ CGCTTCTCATCCTGATCCTTTTCAGCAATCTGAATCATGTAATCAAGGGCCATCATAAAC
____________________________________________________________
consensus CGCTTCTCATCCTGATCCTTTTCAGCAATCTGAATCATGTAATCAAGGGCCATCATAAAC
. : . : . : . : . : . :
JMSF041G16+ CCTGATTCCATTTCATCCACTCTCTTGCCAATGACTCCTTGTGCAGTCAATTGCACTGCA
JMFF043L18+ CCTGATTCCATTTCATCCACTCTCTTGCCAATGACTCCTTGTGCAGTCAATTGCACTGCA
JMSF025J16+ CCTGATTCCATTTCATCCACTCTCTTGCCAATGACTCCTTGTGCAGTCAATTGCACTGCA
JMFF009A03+ CCTGATTCCATTTCATCCACTCTCTTGCCAATGACTCCTTGTGCAGTCAATTGCACTGCA
JMSF005L01+ ATCCACTCTCTTGCCAATGACTCCTTGTGCAGTCAATTGCACTGCA
____________________________________________________________
consensus CCTGATTCCATTTCATCCACTCTCTTGCCAATGACTCCTTGTGCAGTCAATTGCACTGCA
. : . : . : . : . : . :
JMSF041G16+ ATTTCCTCAGATGCATCATCCATGGCCATATCTTCCAAGAGCTTGGCCATCTCGTCGAGA
JMFF043L18+ ATTTCCTCAGATGCATCATCCATGGCCATATCTTCCAAGAGCTTGGCCATCTCGTCGAGA
JMSF025J16+ ATTTCCTCAGATGCATCATCCATGGCCATATCTTCCAAGAGCTTGGCCATCTCGTCGAGA
JMFF009A03+ ATTTCCTCAGATGCATCATCCATGGCCATATCTTCCAAGAGCTTGGCCATCTCGTCGAGA
JMSF005L01+ ATTTCCTCAGATGCATCATCCATGGCCATATCTTCCAAGAGCTTGGCCATCTCGTCGAGA
____________________________________________________________
consensus ATTTCCTCAGATGCATCATCCATGGCCATATCTTCCAAGAGCTTGGCCATCTCGTCGAGA
. : . : . : . : . : . :
JMSF041G16+ ACAGACACGACCTGTTCTCCACCTTTCAGTAAATCCTCGTACTGAGAAACGTCCAAATTT
JMFF043L18+ ACAGACACGACCTGTTTTCCACCTTTCAGTAAATCCTCGTACTGAGAATCGTCCAAATTT
JMSF025J16+ ACAGACACGACCTGTTCTCCACCTTTCAGTAAATCCTCGTACTGAGAAACGTCCAAATTT
JMFF009A03+ ACAGACACGACCTGTTCTCCACCTTTCAGTAAATCCTCGTACTGAGAAACGTCCAAATTT
JMSF005L01+ ACAGACACGACCTGTTCTCCACCTTTCAGTAAATCCTCGTACTGAGAAACGTCCAAATTT
____________________________________________________________
consensus ACAGACACGACCTGTTCTCCACCTTTCAGTAAATCCTCGTACTGAGAAACGTCCAAATTT
. : . : . : . : . : . :
JMSF041G16+ AGGTTTCCCGTTTCGCTAGCCCTGCTTTGAGAGCCCAGCCTTTCCGTCGAGAATCCTCCG
JMFF043L18+ AGGTTTCCCGTTTCGCTAGCCCTGCTTTGAGAGCCCAGCCTTTCCGTCGAGAATCCTCCG
JMSF025J16+ AGGTTTCCCGTTTCGCTAGCCCTGCTTTGAGAGCCCAGCCTTTCCGTCGAGAATCCTCCG
JMFF009A03+ AGGTTTCCCGTTTCGCTAGCCCTGCTTTGAGAGCCCAGCCTTTCCGTCGAGAATCCTCCG
JMSF005L01+ AGGTTTCCCGTTTCGCTAGCCCTGCTTTGAGAGCCCAGCCTTTCCGTCGAGAATCCTCCG
____________________________________________________________
consensus AGGTTTCCCGTTTCGCTAGCCCTGCTTTGAGAGCCCAGCCTTTCCGTCGAGAATCCTCCG
. : . : . : . : . : . :
JMSF041G16+ CCGACGGCGGAGCTGTTGCATTGTATCAAGACATTTTGCCTCTTCGCTCGACGCTTTGGC
JMFF043L18+ CCGACGGCGGAGCTGTTGCATTGTATCAAGACATTTTGCCTCTTCGCTCGACGCTTTGGC
JMSF025J16+ CCGACGGCGGAGCTGTTGCATTGTATCAAGACATTTTGCCTCTTCGCTCGACGCTTTGGC
JMFF009A03+ CCGACGGCGGAGCTGTTGCATTGTATCAAGACATTTTGCCTCTTCGCTCGACGCTTTGGC
JMSF005L01+ CCGACGGCGGAGCTGTTGCATTGTATCAAGACATTTTGCCTCTTCGCTCGACGCTTTGGC
____________________________________________________________
consensus CCGACGGCGGAGCTGTTGCATTGTATCAAGACATTTTGCCTCTTCGCTCGACGCTTTGGC
. : . : . : . : . : . :
JMSF041G16+ AGCGAGTGGGAGCTGAAATGCAGAGAATTGGCGTTGTTTGATGTTGAGAACAGATTAGTG
JMFF043L18+ AGCGAGTGGGAGCTGAAATGCAGAGAATTGGCGTTGTTTGATGTTGAGAACAGATTAGTC
JMSF025J16+ AGCGAGTGGGAGCTGAAATGCAGAGAATTGGCGTTGTTTGATGTTGAGAACAGATTAGTG
JMFF009A03+ AGCGAGTGGGAGCTGAAATGCAGAGAATTGGCGTTGTTTGATGTTGAGAACAGATTAGTG
JMSF005L01+ AGCGAGTGGGAGCTGAAATGCAGAGAATTGGCGTTGTTTGATGTTGAGAACAGATTAGTG
____________________________________________________________
consensus AGCGAGTGGGAGCTGAAATGCAGAGAATTGGCGTTGTTTGATGTTGAGAACAGATTAGTG
. : . : . : . : . : . :
JMSF041G16+ CGAGAAGAAAGCGTGGGAAAACAGAGAGAAGCCATAAACAAGGGATATTTGAT
JMFF043L18+ TGAGAAGAAAGCGTGGGAAAACAGAGAGAAGCGTTAAACAAGGGATAT
JMSF025J16+ CGAGAAGAAAGCGTGGGAAAACAGAGAGAAGCCATAAACAAGGGATATTTGAT
JMFF009A03+ CGAGAAGAAAGCGTGGGAAAACAGAGAGAAGCCATAAACAAGGGATATTTGAT
JMSF005L01+ CGAGAAGAAAGCGTGGGAAAACAGAGAGAAGCCATAAACAAGGGATATTTGATATTTCTC
____________________________________________________________
consensus CGAGAAGAAAGCGTGGGAAAACAGAGAGAAGCCATAAACAAGGGATATTTGATATTTCTC