| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF033C23 | Sequence | 447 | 006374 (5) | ref|XP_006340213.1| | 9e-50 | PREDICTED: ruBisCO large subunit-binding protein subunit alpha, chloroplastic-l | 814 | 012357 (4) | ref|XP_011000529.1| | 2e-101 | PREDICTED: ruBisCO large subunit-binding protein subunit alpha [Populus euphrat |
| JMFS066E12 | Sequence | 627 | 006374 (5) | ref|XP_006340213.1| | 1e-87 | PREDICTED: ruBisCO large subunit-binding protein subunit alpha, chloroplastic-l | |||||
| JMSF002K22 | Sequence | 306 | 006374 (5) | ref|XP_006340213.1| | 4e-17 | PREDICTED: ruBisCO large subunit-binding protein subunit alpha, chloroplastic-l | 743 | 012357 (4) | ref|XP_011000529.1| | 1e-92 | PREDICTED: ruBisCO large subunit-binding protein subunit alpha [Populus euphrat |
| JMSF005B22 | Sequence | 287 | 006374 (5) | gb|EYU42157.1| | 3e-08 | hypothetical protein MIMGU_mgv1a019252mg, partial [Erythranthe guttata] | |||||
| JMSF051P20 | Sequence | 671 | 006374 (5) | ref|XP_006340213.1| | 6e-109 | PREDICTED: ruBisCO large subunit-binding protein subunit alpha, chloroplastic-l | 738 | 012357 (4) | ref|XP_011000529.1| | 5e-92 | PREDICTED: ruBisCO large subunit-binding protein subunit alpha [Populus euphrat |
This contig is upended
. : . : . : . : . : . :
JMSF051P20+ CAGCAATCATGGTACCAATGGCTT
____________________________________________________________
consensus CAGCAATCATGGTACCAATGGCTT
. : . : . : . : . : . :
JMSF051P20+ CATCATTTCCAGCTGAAATTGAAGCAATTGCTTTGATATCATCTCGACCTTTAACCGGTC
____________________________________________________________
consensus CATCATTTCCAGCTGAAATTGAAGCAATTGCTTTGATATCATCTCGACCTTTAACCGGTC
. : . : . : . : . : . :
JMSF051P20+ TAGCTTTATTTTCAAGCTCGTCCACCAAACCCTGTATAGTTTTGTCAATGCCCCTCTTTA
JMFS066E12+ TTTCAAGCTCGTCCACCAAACCCTGTATAGTTTTGTCAATGCCCCTCTTTA
____________________________________________________________
consensus TAGCTTTATTTTCAAGCTCGTCCACCAAACCCTGTATAGTTTTGTCAATGCCCCTCTTTA
. : . : . : . : . : . :
JMSF051P20+ TGGACACTGGGTTTGCACCAGATGTAACACTCAAGAGACCAAGTTTGATCATTTCACGTG
JMFS066E12+ TGGACACTGGGTTTGCACCAGATGTAACACTCAAGAGACCAAGTTTGATCATTTCACGTG
____________________________________________________________
consensus TGGACACTGGGTTTGCACCAGATGTAACACTCAAGAGACCAAGTTTGATCATTTCACGTG
. : . : . : . : . : . :
JMSF051P20+ CAAGAACTGATGCAGTTGTTGTTCCATCACCAGCTGAATCATTGGTTTTGCTTGCAACCT
JMFS066E12+ CAAGAACTGATGCAGTTGTTGTTCCATCACCAGCTGAATCATTGGTTTTGCTTGCAACCT
____________________________________________________________
consensus CAAGAACTGATGCAGTTGTTGTTCCATCACCAGCTGAATCATTGGTTTTGCTTGCAACCT
. : . : . : . : . : . :
JMSF051P20+ CCCTAATAAGGGCTGCACCAGCATTTTCCATAGGATCAGCAAGCTCTATAGCTCTAGCAA
JMFS066E12+ CCCTAATAAGGGCTGCACCAGCATTTTCCATAGGATCAGCAAGCTCTATAGCTCTAGCAA
JMFF033C23+ AGGGCTGCACCAGCATTTTCCATAGGATCAGCAAGCTCTATAGCTCTAGCAA
____________________________________________________________
consensus CCCTAATAAGGGCTGCACCAGCATTTTCCATAGGATCAGCAAGCTCTATAGCTCTAGCAA
. : . : . : . : . : . :
JMSF051P20+ TTGTCACTCCATCATTAACAACTTTTGGAGTTCCAAATTCGTCCAACACAACATTCCTCC
JMFS066E12+ TTGTCACTCCATCATTAACAACTTTTGGAGTTCCAAATTCGTCCAACACAACATTCCTCC
JMFF033C23+ TTGTCACTCCATCATTAACAACTTTTGGAGTTCCAAATTCGTCCAACACAACATTCCTCC
____________________________________________________________
consensus TTGTCACTCCATCATTAACAACTTTTGGAGTTCCAAATTCGTCCAACACAACATTCCTCC
. : . : . : . : . : . :
JMSF051P20+ CCCTGGGTCCAAGAGTGAGTCCGACGGCATCAGCGAGCTTATCGATGCCGGCCTGAAGAG
JMFS066E12+ CCCTGGGTCCAAGAGTGAGTCCGACGGCATCAGCGAGCTTATCGATGCCGGCCTGAAGAG
JMFF033C23+ CCCTGGGTCCAAGAGTGAGTCCGACGGCATCAGCGAGCTTATCGATGCCGGCCTGAAGAG
JMSF002K22+ CATCAGCGAGCTTATCGATGCCGGCCTGAAGAG
____________________________________________________________
consensus CCCTGGGTCCAAGAGTGAGTCCGACGGCATCAGCGAGCTTATCGATGCCGGCCTGAAGAG
. : . : . : . : . : . :
JMSF051P20+ CGGTCCTGGATTTCTGGTCAAAAGCAATTTCCTTGGCATTAGCCCTCACCACAAACCGAT
JMFS066E12+ CGGTCCTGGATTTCTGGTCAAAAGCAATTTCCTTGGCATTAGCCCTCACCACAAACCGAT
JMFF033C23+ CGGTCCTGGATTTCTGGTCAAAAGCAATTTCCTTGGCATTAGCCCTCACCACAAACCGAT
JMSF002K22+ CGGTCCTGGATTTCTGGTCAAAAGCAATTTCCTTGGCATTAGCCCTCACCACAAACCGAT
JMSF005B22+ CTGGTCAAAAGCAATTTCCTTGGCATTAGCCCTCACCACAAACCGAT
____________________________________________________________
consensus CGGTCCTGGATTTCTGGTCAAAAGCAATTTCCTTGGCATTAGCCCTCACCACAAACCGAT
. : . : . : . : . : . :
JMSF051P20+ TCTTCGAGTTCGACGTCTTGGGGTTGAAACTCCTCCCCTGCAGCTGGCTAGTCCTCCTAC
JMFS066E12+ TCTTCGAGTTCGACGTCTTGGGGTTGAAACTCCTCCCCTGCAGCTGGCTAGTCCTCCTAC
JMFF033C23+ TCTTCGAGTTCGACGTCTTGGGGTTGAAACTCCTCCCCTGCAGCTGGCTAGTCCTCCTAC
JMSF002K22+ TCTTCGAGTTCGACGTCTTGGGGTTGAAACTCCTCCCCTGCAGCTGGCTAGTCCTACTAC
JMSF005B22+ TCTTCGAGTTCGACGTCTTGGGGTTGAAACTACTCCCCTGCAGCTGGCTAGTCCTCCTAC
____________________________________________________________
consensus TCTTCGAGTTCGACGTCTTGGGGTTGAAACTCCTCCCCTGCAGCTGGCTAGTCCTCCTAC
. : . : . : . : . : . :
JMSF051P20+ CACTCCTCAAACCCCCTCGATTGGAAGGTGAGGAGAGGATTGAGGCAGTTGAGATGGCGT
JMFS066E12+ CACTCCTCAAACCCCCTCGATTGGAAGGTGAGGAGAGGATTGAGGCAGTTGAGATGGCGT
JMFF033C23+ CACTCCTCAAACCCCCTCGATTGGAAGGTGAGGAGAGGATTGAGGCAGTTGAGATGGCGT
JMSF002K22+ CACTCCTCAAACCCCCTCGATTGGAAGGTGAGGAGAGGATTGAGGCAGTTGAGATGGCGT
JMSF005B22+ CACTCCTCAAACCCCCTCGATTGGAAGGTGAGGAGAGGATTGAGGCAGTTGAGATGGCGT
____________________________________________________________
consensus CACTCCTCAAACCCCCTCGATTGGAAGGTGAGGAGAGGATTGAGGCAGTTGAGATGGCGT
. : . : . : . : . : . :
JMSF051P20+ TTGCGGAAGCCATTTCTGACGAGGAGTTAGCTTGCCTGCTTGGTGC
JMFS066E12+ TTGCGGAAGCCATTTCTGACGAGGAGTTAGCTTGCCTGCTTGGTGCGAGAGTGAGAGATG
JMFF033C23+ TTGCGGAAGCCATTTCTGACGAGGAGTTAGCTTGCCTGCTTGGTGCGAGAGTGAGAGATG
JMSF002K22+ TTGCGGAAGCCATTTCTGACGAGGAGTTAGCTTGCCTGCTTGGTGCGAGAGTGAGAGACG
JMSF005B22+ TTGCGGAAGCCATTTCTGACGAGGAGTTAGCTTGCCTGCTTGGTGCGAGAGTGAGAGATG
____________________________________________________________
consensus TTGCGGAAGCCATTTCTGACGAGGAGTTAGCTTGCCTGCTTGGTGCGAGAGTGAGAGATG
. : . : . : . : . : . :
JMFS066E12+ ATTAGATAAGGTTT
JMFF033C23+ ATTAGATAAGGTTTTATGAGACGGAGGTTTT
JMSF002K22+ ATTAGATAAGGTTTTATGAGACGGAGGTTTT
JMSF005B22+ ATTAGATAAGGTTTTATGAGACGGAGGTTTTGAAGAGCGTTTGCTACTAGCTAGGGCTTC
____________________________________________________________
consensus ATTAGATAAGGTTTTATGAGACGGAGGTTTTGAAGAGCGTTTGCTACTAGCTAGGGCTTC