Contig 006359:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN011I20Sequence556006359 (6)
JMFN015G14Sequence551006359 (6)
JMSF003H15Sequence398006359 (6)574006359 (6)
JMSF042H03Sequence609006359 (6)571006359 (6)

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF042H03- CTTCAATAGTATCTTCAATTCTTTTATCTTTTTTTTTTTT
JMSF042H03+ TTTTTTTTTT
                      ____________________________________________________________
consensus CTTCAATAGTATCTTCAATTCTTTTATCTTTTTTTTTTTT
 
. : . : . : . : . : . :
rJMSF042H03- AATTAAANGCAATAANGGCGNGAAAAATCGAANTCGANATTAAAATCNCTGAAAATATGC
JMFN015G14+ GAAAATATGC
rJMSF003H15- GAAAAATCGAAATCGANATTAAAATCNCTGAAAATATGC
JMFN011I20+ GAAAATATGG
JMSF042H03+ AATTAAATGCAATAAAGGCGTGAAAAATCGAAATCGAGATTAAAATCACTGAAAATATGC
                      ____________________________________________________________
consensus AATTAAATGCAATAAAGGCGTGAAAAATCGAAATCGAGATTAAAATCACTGAAAATATGC
 
. : . : . : . : . : . :
rJMSF042H03- GGCAAAANAAAANAANACNGAGATTACTAAAATATATAACNCNCNTCTTTCAGGGATTTT
JMFN015G14+ GGCAAAAGAAAAGAAGACAGAGATTACTAAGATATATAACACACATCTTTCATGGATTTT
rJMSF003H15- GGCAAAAGAAAAGAANACNGAGNTTACTAANATATATAACNCNCNTCTTTCAGGGATTTT
JMFN011I20+ GGCAAAAGAAAACAAGACATAGATTACTTAGATATATAACACACATCTTTCATGTATTTT
JMSF042H03+ GGCAAAAGAAAAGAAGACAGAGATTACTAAGATATATAACACACATCTTTCATGGATTTT
                      ____________________________________________________________
consensus GGCAAAAGAAAAGAAGACAGAGATTACTAAGATATATAACACACATCTTTCATGGATTTT
 
. : . : . : . : . : . :
rJMSF042H03- CCAAANTTTAGGTTCAAAGGNCGGCTGAGGCTTCNCNCAANCGNACCCAAACTTTGNCNC
JMFN015G14+ CCGAAATTTAGGTTCGAAGGTCGGCTGAGGCTTCTCGCAATCGGACCCAGACTTTGTCGC
rJMSF003H15- CCNAANTTTAGGTTCAAAGGTCGGCTGAGGCTTCNCGCAATCGGACCCAAACTTTGTCNC
JMFN011I20+ CTGAAATTTAGGTTCGAAGGTTGGTTTAGGCTTCTTGCAATGGGACCCAGACTTTGTCGC
JMSF042H03+ CCGAAATTTAGGTTCGAAGGTCGGCTGAGGCTTCTCGCAATCGGACCCAGACTTTGTCGC
                      ____________________________________________________________
consensus CCGAAATTTAGGTTCGAAGGTCGGCTGAGGCTTCTCGCAATCGGACCCAGACTTTGTCGC
 
. : . : . : . : . : . :
rJMSF042H03- TCNAANCTTCCCCGGCAAAGGAGNCNTTGCANGGAGNANCAAANGGNGTTNANGGNGNCG
JMFN015G14+ TCGAAGCTTCCCCGGCGAAGGAGTCGTTGCATGGAGGATCAGATGGTGTTGATGGTGTCG
rJMSF003H15- TCGAANCTTCCCCGGCNAAGGANNCNTTGCATGGAGNATCAAATGGNGTTGATGGNGTCG
JMFN011I20+ TGGAAGCTTCCCCGGCAAAGGAGTCGTTGCATGCAGGATCACATGGTGTTGATGGTGTTG
JMSF042H03+ TCGAAGCTTCCCCGGCGAAGGAGTCGTTGCATGGAGGATCAGATGGTGTTGATGGTGTCG
JMSF003H15+ AGTCGTTGCATGGAGGATCAGATGGTGTTGATGGTGTCG
                      ____________________________________________________________
consensus TCGAAGCTTCCCCGGCAAAGGAGTCGTTGCATGGAGGATCAGATGGTGTTGATGGTGTCG
 
. : . : . : . : . : . :
rJMSF042H03- GGNATGTCTANANAACGT-TCNCCNCTGGNCGNANCGNCNNCGGCNATCGCGNAATTTCC
JMFN015G14+ GGGATGTCTAGAGAACGT-TCGCCGCTGGTCGGATCGTCGTCGGCGATCGCGGAATTTCC
rJMSF003H15- GGNATGTCTANANAACGT-TCNCCGCTGGTCGNATCGNCNNCGGCNATCGCGNAATTTCC
JMFN011I20+ GGGATGTTTAGAGAACGTGTGCCCGCTGGTTGGATAGTTGTCGGCGTTCGCGGAATTTCC
JMSF042H03+ GGGATGTCTAGAGAACGT-TCGCCGCTGGTCGGATCGTCGTCGGCGATCGCGGAATTTCC
JMSF003H15+ GGGATGTCTAGAGAACGT-TCGCCGCTGGTCGGATCGTCGTCGGCGATCGCGGAATTTCC
                      ____________________________________________________________
consensus GGGATGTCTAGAGAACGT-TCGCCGCTGGTCGGATCGTCGTCGGCGATCGCGGAATTTCC
 
. : . : . : . : . : . :
rJMSF042H03- ATCGNAGGTTGTTTTGCANCCGTTCANTTTCCGGCCAACAAAGGNCNCTGACAATTGACA
JMFN015G14+ ATCGGAGGTTGTTTTGCAACCGTTCAATTTCCGGCCAACAGAGGTCGCTGACAATTGACA
rJMSF003H15- ATCGNAGGTTGTTTTGCAACCGTTCANTTTCCGGCCAACANAGGTCNCTGACAATTGACA
JMFN011I20+ TTTGAAGGTTGTTTTGCTGCCGTTCAATTTGCGGCCAACAGAGGTCGCTTCCTATTGACA
JMSF042H03+ ATCGGAGGTTGTTTTGCAACCGTTCAATTTCCGGCCAACAGAGGTCGCTGACAATTGACA
JMSF003H15+ ATCGGAGGTTGTTTTGCAACCGTTCAATTTCCGGCCAACAGAGGTCGCTGACAATTGACA
                      ____________________________________________________________
consensus ATCGGAGGTTGTTTTGCAACCGTTCAATTTCCGGCCAACAGAGGTCGCTGACAATTGACA
 
. : . : . : . : . : . :
rJMSF042H03- AAAAAGGGGCTGGNGGCNATGGCCTTGGNGNGGNCNCGGCTGATTGANCCCCCCNGCGNA
JMFN015G14+ AAGAAGGGGCTGGTGGCGATGGCCTTGGTGTGGTCACGGCTGATTGATCCCCCCTGCGTA
rJMSF003H15- AAAAAGGGGCTGGNGGCNATGGCCTTGGNGNGGNCNCGGCTGATTGATCCCCCCTGCGTA
JMFN011I20+ AAAAAGGGGCTGGTGACGATGCCCTTGGTGTGGTCGCGTTTGATTGATCCCCCCTGTGTA
JMSF042H03+ AAGAAGGGGCTGGTGGCGATGGCCTTGGTGTGGTCACGGCTGATTGATCCCCCCTGCGTA
JMSF003H15+ AAGAAGGGGCTGGTGGCGATGGCCTTGGTGTGGTCACGGCTGATTGATCCCCCCTGCGTA
                      ____________________________________________________________
consensus AAAAAGGGGCTGGTGGCGATGGCCTTGGTGTGGTCACGGCTGATTGATCCCCCCTGCGTA
 
. : . : . : . : . : . :
rJMSF042H03- ACCATANCNCCNGNCCCCGGCAAGGCAAAAAGGGGCTGGNGGCNATGGCCTTGGNGNGGN
JMFN015G14+ ACCATAGCTCCTGTCGCCGGCGAGGCAAGAAGGGGCTGGTGGCGATGGCCTTGGTGTGGT
rJMSF003H15- ACCATANCTCCNGTCNCCGGCAAGGCAAAAAGGGGCTGGNGGCNATGGCCTTGGTGNGGN
JMFN011I20+ GCCATAGCTCCTGTTGCCGGCGAGGCAATAATGGCCTGGTGGCGATGCCCTTGGTGTGGT
JMSF042H03+ ACCATAGCTCCTGTCGCCGGCGAGGCAAGAAGGGGCTGGTGGCGATGGCCTTGGTGTGGT
JMSF003H15+ ACCATAGCTCCTGTCGCCGGCGAGGCAAGAAGGGGCTGGTGGCGATGGCCTTGGTGTGGT
                      ____________________________________________________________
consensus ACCATAGCTCCTGTCGCCGGCGAGGCAAGAAGGGGCTGGTGGCGATGGCCTTGGTGTGGT
 
. : . : . : . : . : . :
rJMSF042H03- CANGGCTNATTGANCCCCCCNGCGNAACCATANCTCCNGTCNCCGGCNAGGC
JMFN015G14+ CATGGCTGATTGATCCCCCCTGCGTAACCATAGCTCCTGTCGCCGGCGAGGCTTCGATCA
rJMSF003H15- CATGGCTGATTGATCCCCCCTGCGNAACCATAGCTCCNGTCNCCGGCNAGGCTTCNATCA
JMFN011I20+ CATGGGTGATTGATCCCCCCTGCGTAACCATAGCTCCTGTCGCCGG
JMSF042H03+ CATGGCTGATTGATCCCCCCTGCGTAACCATAGCTCCTGTCGCCGGCGAGGCTTCGATCA
JMSF003H15+ CATGGCTGATTGATCCCCCCTGCGTAACCATAGCTCCTGTCGCCGGCGAGGCTTCGATCA
                      ____________________________________________________________
consensus CATGGCTGATTGATCCCCCCTGCGTAACCATAGCTCCTGTCGCCGGCGAGGCTTCGATCA
 
. : . : . : . : . : . :
JMFN015G14+ CGATTGCAATGGAGTCGCAGACGGTCTGATGGA
rJMSF003H15- CNATTGCAANGGANTCNCAAACGGNCTGATGGAGTTGATGCCTTGATGGGT
JMSF042H03+ CGATTGCAATGGAGTCGCAGACGGTCTGATGGAGTTGATGCCTTGATGGGTGAGCTGC
JMSF003H15+ CGATTGCAATGGAGTCGCAGACGGTCTGATGGAGTTGATGCCTTGATGGGTGAGCTGCAC
                      ____________________________________________________________
consensus CGATTGCAATGGAGTCGCAGACGGTCTGATGGAGTTGATGCCTTGATGGGTGAGCTGCAC