| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF024A06 | Sequence | 501 | 006347 (4) | ref|XP_006349043.1| | 3e-25 | PREDICTED: pheophorbide a oxygenase, chloroplastic-like [Solanum tuberosum] | 750 | 011067 (4) | gb|AGT97047.1| | 8e-123 | pheophorbide A oxygenase [Capsicum annuum] |
| JMFS044C09 | Sequence | 622 | 006347 (4) | gb|KDO60298.1| | 5e-83 | hypothetical protein CISIN_1g009165mg [Citrus sinensis] | |||||
| JMSF002D20 | Sequence | 337 | 006347 (4) | 727 | 011067 (4) | gb|AFU51539.1| | 4e-122 | lethal leaf spot 1-like protein [Capsicum annuum] | |||
| JMSF037N16 | Sequence | 579 | 006347 (4) | ref|XP_006349043.1| | 9e-39 | PREDICTED: pheophorbide a oxygenase, chloroplastic-like [Solanum tuberosum] | 683 | 011067 (4) | gb|AFU51539.1| | 8e-112 | lethal leaf spot 1-like protein [Capsicum annuum] |
This contig is upended
. : . : . : . : . : . :
JMFS044C09+ TCAGGCCAGACAAAGAGAAGTCCCTGAGACACCATAGCCGG
____________________________________________________________
consensus TCAGGCCAGACAAAGAGAAGTCCCTGAGACACCATAGCCGG
. : . : . : . : . : . :
JMFS044C09+ AAGCTTGGTGGCGCATGCCCTGGGCGACTTAACGGCACGCGCCTCCGGTCCCTCCGAGGC
____________________________________________________________
consensus AAGCTTGGTGGCGCATGCCCTGGGCGACTTAACGGCACGCGCCTCCGGTCCCTCCGAGGC
. : . : . : . : . : . :
JMFS044C09+ AGCCTGCGGGATCCTCGTACAAGACCCACACCCATCAAACGACCACCCATGGTACGAGCA
____________________________________________________________
consensus AGCCTGCGGGATCCTCGTACAAGACCCACACCCATCAAACGACCACCCATGGTACGAGCA
. : . : . : . : . : . :
JMFS044C09+ CTGCAAATGCCCGTTTTCGTCTAATCTCCCTTCAGATAAAGGAGCGAGGCGGTGGGGGCA
JMFF024A06+ CAGATAAAGGAGCGAGGCGGTGGGGGCA
JMSF037N16+ CAGATAAAGGAGCGAGGCGGTGGGGGCA
____________________________________________________________
consensus CTGCAAATGCCCGTTTTCGTCTAATCTCCCTTCAGATAAAGGAGCGAGGCGGTGGGGGCA
. : . : . : . : . : . :
JMFS044C09+ TTTGTCGTCCATGGCGA-CCCACTGGGAGGTGGATTTATCGAACCAGAGAACGATCTCGC
JMFF024A06+ TTTGTCGTCCATGGCGACCCCACTGGGAGGTGGATTTATCGAACCAGAGAACGATCTCGC
JMSF037N16+ TTTGTCGTCCATGGCGA-CCCACTGGGAGGTGGATTTATCGAACCAGAGAACGATCTCGC
____________________________________________________________
consensus TTTGTCGTCCATGGCGA-CCCACTGGGAGGTGGATTTATCGAACCAGAGAACGATCTCGC
. : . : . : . : . : . :
JMFS044C09+ GGTTAAGGAGCTGAAAAGGGGTGGGCAGAGCCGGGTCGAGATCTTCCACTAGGGAAACCG
JMFF024A06+ GGTTAAGGAGCTGAAAAGGGGTGGGCAGAGCCGGGTCGAGATCTTCCACTAGGGAAACCG
JMSF037N16+ GGTTAAGGAGCTGAAAAGGGGTGGGCAGAGCCGGGTCGAGATCTTCCACTAGGGAAACCG
____________________________________________________________
consensus GGTTAAGGAGCTGAAAAGGGGTGGGCAGAGCCGGGTCGAGATCTTCCACTAGGGAAACCG
. : . : . : . : . : . :
JMFS044C09+ GGTACCAATGGTCCCGCCAATTGAACTTAGACGATGAACCATCTTCGCCCATCTGGCTCA
JMFF024A06+ GGTACCAATGGTCCCGCCAATTGNACTTAGACGATGAACCATCTTCGCCCATCTGGCTCA
JMSF037N16+ GGTACCAATGGTCCCGCCAATTGAACTTAGACGATGAACCATCTTCGCCCATCTGGCTCA
____________________________________________________________
consensus GGTACCAATGGTCCCGCCAATTGAACTTAGACGATGAACCATCTTCGCCCATCTGGCTCA
. : . : . : . : . : . :
JMFS044C09+ CAAGTTCATCATCCCTTTCATTCGATCCCAAAATTGGGTCCTCGGATGCCTGAGGCGGGG
JMFF024A06+ CAAGTTCATCATCCCTTTCATTCGATCCCAAAATTGGGTCCTCGGATGCCTGAGGCGGGG
JMSF037N16+ CAAGTTCATCATCCCTTTCATTCGATCCCAAAATTGGGTCCTCGGATGCCTGAGGCGGGG
JMSF002D20+ GATCCCAAAATTGGGTCCTCGGATGCCTGAGGCGGGG
____________________________________________________________
consensus CAAGTTCATCATCCCTTTCATTCGATCCCAAAATTGGGTCCTCGGATGCCTGAGGCGGGG
. : . : . : . : . : . :
JMFS044C09+ TGGTGGGCGGCGCCGCCACGCGAAGAGGGGTCACAGCGCTCCTCCTCCTCCTTCTCCCTC
JMFF024A06+ TGGTGGGCGGCGCCGCCACGCGAAGAGGGGTCACAGCGCTCCTCCTCCTCCTTCTCCCTC
JMSF037N16+ TGGTGGGCGGCGCCGCCACGCGAAGAGGGGTCACAGCGCTCCTCCTCCTCCTTCTCCCTC
JMSF002D20+ TGGTGGGCGGCGCCGCCACGCGAAGAGGGGTCACAGCGCTCCTCCTCCTCCTTCTCCCTC
____________________________________________________________
consensus TGGTGGGCGGCGCCGCCACGCGAAGAGGGGTCACAGCGCTCCTCCTCCTCCTTCTCCCTC
. : . : . : . : . : . :
JMFS044C09+ GGAAACACAACGCGTTACTGGGGTGCGGAGAGAGCGAGGAGCGAAGGGGAGAGAGAACTG
JMFF024A06+ GGAAACACAACGCGTTACTGGGGTGCGGAGAGAGCGAGGAGCGAAGGGGAGAGAGAACTG
JMSF037N16+ GGAAACACAACGCGTTACTGGGGTGCGGAGAGAGCGAGGAGCGAAGGGGAGAGAGAACTG
JMSF002D20+ GGAAACACAACGCGTTACTGGGGTGCGGAGAGAGCGAGGAGCGAAGGGGAGAGAGAACTG
____________________________________________________________
consensus GGAAACACAACGCGTTACTGGGGTGCGGAGAGAGCGAGGAGCGAAGGGGAGAGAGAACTG
. : . : . : . : . : . :
JMFS044C09+ AGAGAGTGTGGAGAGTGGGGGAGAGCGAAGAAGCCATGGGAA
JMFF024A06+ AGAGAGTGTGGAGAGTGGGGGAGAGCGAAGAAGCCATGGGAATGGGAATACAGATTGGAA
JMSF037N16+ AGAGAGTGTGGAGAGTGGGGGAGAGCGAAGAAGCCATGGGAATGGGAATACAGATTGGAA
JMSF002D20+ AGAGAGTGTGGAGAGTGGGGGAGAGCGAAGAAGCCATGGGAATGGGAATACAGATTGGAA
____________________________________________________________
consensus AGAGAGTGTGGAGAGTGGGGGAGAGCGAAGAAGCCATGGGAATGGGAATACAGATTGGAA
. : . : . : . : . : . :
JMFF024A06+ GGAAAGCGGTGAGAGGAGGGATTATTATTATTATTATGCAGAATTC
JMSF037N16+ GGAAAGCGGTGAGAGGAGGGATTATTATTATTATTATGCAGAATTCAATTCATTCGGCGA
JMSF002D20+ GGAAAGCGGTGAGAGGAGGGATTATTATTATTATTATGCAGAATTCAATTCATTCGGCGA
____________________________________________________________
consensus GGAAAGCGGTGAGAGGAGGGATTATTATTATTATTATGCAGAATTCAATTCATTCGGCGA
. : . : . : . : . : . :
JMSF037N16+ AGCGGTGATGGAGTGTGGAATGGAAGTGAAAGAAGGCTTTGCGTGCAAGGTAGAAAGTTC
JMSF002D20+ AGCGGTGATGGAGTGTGGAATGGAAGTGAAAGAAGGCTTTGCGTGCAAGGTAGAAAGTTC
____________________________________________________________
consensus AGCGGTGATGGAGTGTGGAATGGAAGTGAAAGAAGGCTTTGCGTGCAAGGTAGAAAGTTC