Contig 006342:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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JMFS143A06+                                                                   TATA
                      ____________________________________________________________
consensus                                                                     TATA
 
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JMFS143A06+           ACTATTGATAACTGNCCAGTTGTTAGTAATGGTTCAATCAGACTCGAATGAGGTTCAGAG
                      ____________________________________________________________
consensus             ACTATTGATAACTGNCCAGTTGTTAGTAATGGTTCAATCAGACTCGAATGAGGTTCAGAG
 
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JMFS143A06+           GACGAAATATCTTAAAATATTTTCTTAAACCATCTCACAGAAACATTTGTTACACTTGAA
                      ____________________________________________________________
consensus             GACGAAATATCTTAAAATATTTTCTTAAACCATCTCACAGAAACATTTGTTACACTTGAA
 
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JMFS143A06+           GAGTGATTAGGTTTCAGGTCAACTTAACTATTGATAACTTGCCAGTTGTTAGTAATGGTT
                      ____________________________________________________________
consensus             GAGTGATTAGGTTTCAGGTCAACTTAACTATTGATAACTTGCCAGTTGTTAGTAATGGTT
 
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JMFS143A06+           CAATCAGACTCGAATGAGGTTCAGAGGACGAAATATCTTAAAATATTTTCTTAAACCATC
                      ____________________________________________________________
consensus             CAATCAGACTCGAATGAGGTTCAGAGGACGAAATATCTTAAAATATTTTCTTAAACCATC
 
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JMFS143A06+           TCACAGAAACATTTGTTACACTTGAAGAGTGATTAGGTTTCAGGTGAACTTAACTATTGA
                      ____________________________________________________________
consensus             TCACAGAAACATTTGTTACACTTGAAGAGTGATTAGGTTTCAGGTGAACTTAACTATTGA
 
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JMFS143A06+           TAACTTGCCAGTTGTTAGTAATGGTTCAATCAGACTCGAATGAGGTTCAGAGGACGAAAT
                      ____________________________________________________________
consensus             TAACTTGCCAGTTGTTAGTAATGGTTCAATCAGACTCGAATGAGGTTCAGAGGACGAAAT
 
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JMFS143A06+           ATCTTAAAATATTTTCTTTAACCATCTCACAGAAACATTTGTTACACTTGAAGAGTGATT
                      ____________________________________________________________
consensus             ATCTTAAAATATTTTCTTTAACCATCTCACAGAAACATTTGTTACACTTGAAGAGTGATT
 
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JMFS143A06+           AGGTTTCAGGTGAAATTAAACAACCACTAAAAGTTGAAGCAAAGAGCAAGTATTAAGGAT
                      ____________________________________________________________
consensus             AGGTTTCAGGTGAAATTAAACAACCACTAAAAGTTGAAGCAAAGAGCAAGTATTAAGGAT
 
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JMFS143A06+           CAGGATGAATTGTGAGCAAGAGAACAACAAAATTTTTGTGATGCATGACGTATACCTTGG
JMSF044P16+                                                                 CCTTGG
JMFS007B07+                                                                 CCTTGG
                      ____________________________________________________________
consensus             CAGGATGAATTGTGAGCAAGAGAACAACAAAATTTTTGTGATGCATGACGTATACCTTGG
 
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JMFS143A06+           TTCCATAACTACTAAAATTCTGTTTCTTGACAAGATGAAGATCTTTTGGTGGCCCAATAA
JMSF044P16+           TTCCATAACTACTAAAATTCTGTTTCTTGACAAGATGAAGATCTTTTGGTGGCCCAATAA
JMFS007B07+           TTCCATAACTACTAAAATTCTGTTTCTTGACAAGATGAAGATCTTTTGGTGGCCCAATAA
                      ____________________________________________________________
consensus             TTCCATAACTACTAAAATTCTGTTTCTTGACAAGATGAAGATCTTTTGGTGGCCCAATAA
 
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JMFS143A06+           GATTATTTTGATGATTATTGC                                       
JMSF044P16+           GATTATTTTGATGATTATTGCTCCATTTATTTGCTTGATATGTACTTCGTCTGTTCAGCT
JMFS007B07+           GATTATTTTGATGATTATTGCTCCATTTATTTGCTTGATATGTACTTCGTCTGTTCAGCT
                      ____________________________________________________________
consensus             GATTATTTTGATGATTATTGCTCCATTTATTTGCTTGATATGTACTTCGTCTGTTCAGCT
 
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JMSF044P16+           CTTCAATTTTCTTTTGAACACCTGGCTTCAGTTCCTCAAGCTCAGCCACTGCATTTAACA
JMFS007B07+           CTTCAATTTTCTTTTGAACACCTGGCTTCAGTTCCTCAAGCTCAGCCACTGCATTTAACA
                      ____________________________________________________________
consensus             CTTCAATTTTCTTTTGAACACCTGGCTTCAGTTCCTCAAGCTCAGCCACTGCATTTAACA
 
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JMSF044P16+           ATTTCTTTCTAAGATAAATTTTGTTGCTTTGTGAAGATAATCTGTAATCTCGGTGGCATG
JMFS007B07+           ATTTCTTTCTAAGATAAATTTTGTTGCTTTGTGAAGATAATCTGTAATCTCGGTGGCATG
                      ____________________________________________________________
consensus             ATTTCTTTCTAAGATAAATTTTGTTGCTTTGTGAAGATAATCTGTAATCTCGGTGGCATG
 
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JMSF044P16+           GTATTGTCTCAGAAACCAAACTTGAGAACCTGAGGAGCATAACATATAAATCTATGATGT
JMFS007B07+           GTATTGTCTCAGAAACCAAACTTGAGAACCTGAGGAGCATAACATATAAATCTATGATGT
                      ____________________________________________________________
consensus             GTATTGTCTCAGAAACCAAACTTGAGAACCTGAGGAGCATAACATATAAATCTATGATGT
 
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JMSF044P16+           TCCCCTCTTCTCGAAATATGTCAGCCTGTCTGAGGATATTATCAGCGATACGGAAGTAAA
JMFS007B07+           TCCCCTCTTCTCGAAATATGTCAGCCTGTCTGAGGATATTATCAGCGATACGGAAGTAAA
                      ____________________________________________________________
consensus             TCCCCTCTTCTCGAAATATGTCAGCCTGTCTGAGGATATTATCAGCGATACGGAAGTAAA
 
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JMSF044P16+           CGCGGAGAGAAAAACGGTGATCGACATCAAGCTTCTTAGCGCTTGACGCGATGTTAATTC
JMFS007B07+           CGCGGAGAGAAAAACGGTGATCGACATCAAGCTTCTTAGCGCTTGACGCGATGTTAATTC
JMSF001P13+           CGCGGAGAGAAAAACGGTGATCGACATCAAGCTTCTTAGCGCTTGACGCGATGTTAATTC
                      ____________________________________________________________
consensus             CGCGGAGAGAAAAACGGTGATCGACATCAAGCTTCTTAGCGCTTGACGCGATGTTAATTC
 
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JMSF044P16+           TTCCTGAAGAAGAAGGCGACCTCGTAATCATTTACGATCAGCTAAGAATCGCCTCTGCTT
JMFS007B07+           TTCCTGAAGAAGAAGGCGACCTCGTAATCATTTACGATCAGCTAAGAATCGCCTCTGCTT
JMSF001P13+           TTCCTGAAGAAGAAGGCGACCTCGTAATCATTTACGATCAGCTAAGAATCGCCTCTGCTT
                      ____________________________________________________________
consensus             TTCCTGAAGAAGAAGGCGACCTCGTAATCATTTACGATCAGCTAAGAATCGCCTCTGCTT
 
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JMSF044P16+           ATTATGTTCTATTTTCTGAGCATCCAAACTGTCGGCACGGCGGCGGCGGCGGCGGCGATC
JMFS007B07+           ATTATGTTCTATTTTCTGAGCATCCAAACTGTCGGCACGGCGGCGGCGGCGGCGGCGATC
JMSF001P13+           ATTATGTTCTATTTTCTGAGCATCCAAACTGTCGGCACGGCGGCGGCGGCGGCGGCGATC
                      ____________________________________________________________
consensus             ATTATGTTCTATTTTCTGAGCATCCAAACTGTCGGCACGGCGGCGGCGGCGGCGGCGATC
 
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JMSF044P16+           CGCGGAAGAGAAAGAACTTCGAGTCGTCGGTATCTTCT                      
JMFS007B07+           CGCGGAAGAGAAAGAACTTCGAGTCGTCGGTATCTTCT                      
JMSF001P13+           CGCGGAAGAGAAAGAACTTCGAGTCGTCGGTATCTTCTGTAGAGGGAGAGAGGAATTGTC
                      ____________________________________________________________
consensus             CGCGGAAGAGAAAGAACTTCGAGTCGTCGGTATCTTCTGTAGAGGGAGAGAGGAATTGTC