Contig 006253:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS076B09Sequence622006253 (4)
JMSF001I09Sequence437006253 (4)ref|XP_004289754.1|4e-11PREDICTED: 3-isopropylmalate dehydrogenase 2, chloroplastic-like [Fragaria vesc796009876 (2)ref|XP_009795445.1|1e-69PREDICTED: 3-isopropylmalate dehydrogenase 2, chloroplastic-like [Nicotiana syl
JMSF026C21Sequence620006253 (4)emb|CAN81315.1|1e-59hypothetical protein VITISV_031609 [Vitis vinifera]643009985 (2)ref|XP_009795445.1|3e-79PREDICTED: 3-isopropylmalate dehydrogenase 2, chloroplastic-like [Nicotiana syl
JMSF030F19Sequence676006253 (4)emb|CAN81315.1|4e-60hypothetical protein VITISV_031609 [Vitis vinifera]748009985 (2)ref|XP_004238906.1|6e-130PREDICTED: 3-isopropylmalate dehydrogenase, chloroplastic [Solanum lycopersicum

Alignment

This contig is upended


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JMSF026C21+                                             CTGAAGCAATCCGGTCTCAGGCTTCA
JMSF030F19+                                              TGAAGCCATCCGGTCTCAGGCTTCA
                      ____________________________________________________________
consensus                                               CTGAAGCCATCCGGTCTCAGGCTTCA
 
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JMSF026C21+           AATGCTTTTCATTGTTGTCCCATTTATACCCTCCAATTGCTCCAAGAAGAACAGCATCAG
JMSF030F19+           AATGCTTTTTATTGTTGTCCCATTTATACCCTCCAATTGCTCCAAGAAGAACAGCATCAG
                      ____________________________________________________________
consensus             AATGCTTTTTATTGTTGTCCCATTTATACCCTCCAATTGCTCCAAGAAGAACAGCATCAG
 
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JMSF026C21+           ATTGCTTTGCAGCTGAAAGAGTCTCCTCAGGCAAAGGTACTCCTGCCAAATCAATAGCAA
JMSF030F19+           ATTGCTTTGCGGCTGAAAGAGTCTCCTCAGGCAAAGGCACTCCAGTCAAATCAATAGCAA
                      ____________________________________________________________
consensus             ATTGCTTTGCGGCTGAAAGAGTCTCCTCAGGCAAAGGTACTCCTGTCAAATCAATAGCAA
 
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JMSF026C21+           CCCCACCCATAGGCATCTCATTGAACCCAAACTCAATTCCTTCGAGAGAGCCAGTGAGTT
JMSF001I09+                                                     CGAGAGAGCCAGCAAGTT
JMSF030F19+           CCCCACCCATAGGCATCTCATTGAACCCAAACTCAATTCCTTCGAGAGAGCCAGTGAGTT
                      ____________________________________________________________
consensus             CCCCACCCATAGGCATCTCATTGAACCCAAACTCAATTCCTTCGAGAGAGCCAGTGAGTT
 
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JMSF026C21+           GTAGAGCATTCTTAGCGACAGAGATGACTTCAGGGCCGATACCATCACCGGGGAGGAGAG
JMSF001I09+           GTAGCGCACTCTTAGCAACAGGGATGACTTCAGGGCCAATACCATCACCGGGGAGGAGAG
JMSF030F19+           GTAGAGCATTCTTAGCGACAGAGATGACTTCAGGGCCGATACCATCACCGGGGAGGAGAG
                      ____________________________________________________________
consensus             GTAGAGCATTCTTAGCGACAGAGATGACTTCAGGGCCGATACCATCACCGGGGAGGAGAG
 
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JMSF026C21+           TGATGGAGTAGCATTTGCTGGGTGCAACGACAG---AACAGCGAATCGTAGCCAATCTAA
JMSF001I09+           TGATGGAGTAGCATTTGCTGGGTGCAGCAACAGAACAACAGAGGATTGTAGCCAATCTAA
JMSF030F19+           TGATGGAGTAGCGTTTGCTGGGTGCAGCGACAG---AGCAGCGGATCGTAGCCAATCTAA
                      ____________________________________________________________
consensus             TGATGGAGTAGCATTTGCTGGGTGCAGCGACAG---AACAGCGGATCGTAGCCAATCTAA
 
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JMSF026C21+           AAGAAGGGTGTATGTGGGGGGGCTTATAATGGAACTGGTGTGACTTGATAGGTATTCTCA
JMSF001I09+           AAGAAGGGTGTATGTGGGG-----------GGAACTGGCGTGAGTTGATAGGTATTCTCA
JMSF030F19+           AAGAAGGGTGTATGTGGGGGGGCTTATAATGGAACTGGTGTGACTTGATAGGTATTCTCA
JMFS076B09+                                                  GTGACTTGATAGGTATTCTCA
                      ____________________________________________________________
consensus             AAGAAGGGTGTATGTGGGGGGGCTTATAATGGAACTGGTGTGACTTGATAGGTATTCTCA
 
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JMSF026C21+           CACCGGTATGTAAAGAAGCCGCCATCATTGAGAATCCGTGAAGCAAGCCTGCGCCAAACT
JMSF001I09+           CACCGGTATGTAAAGAAGCCGCCGTCATTGAGAATTCGTGCAGCAAGCCTGCACCAAACT
JMSF030F19+           CACCGGTATGTAAAGAAGCCGCCATCATTGAGAATCCGTGAAGCAAGCCTGCGCCAAACT
JMFS076B09+           CACGGNTATGTAAAGAAGCCGCCATCATTGAGAATCCGTGAAGCAAGCCTGCGCCAAACT
                      ____________________________________________________________
consensus             CACCGGTATGTAAAGAAGCCGCCATCATTGAGAATCCGTGAAGCAAGCCTGCGCCAAACT
 
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JMSF026C21+           ATCAAGCTTCTCTCTCTCCTCGTGCTAAAACAATATCAATTGTCTTGTG           
JMSF001I09+           ACCAAGCTTCTCCCTCTCCTCGTGCTAGAACACTGTCAATTGTCTT              
JMSF030F19+           ATCAAGCTTCTCTCTCTCCTCGTGCTAAAACAATGTCAATTGTCTTGTG           
JMFS076B09+           ATCAAGCTTCTCTCTCTCCTCGTGCTAAAACAATGTCAATTGTCTTGTGACCTGGTATGC
                      ____________________________________________________________
consensus             ATCAAGCTTCTCTCTCTCCTCGTGCTAAAACAATGTCAATTGTCTTGTGACCTGGTATGC
 
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JMFS076B09+           AAATGACAAGAAAGTTGAATGCGCTTGTGCACAATCTATATACATAGGGGTGGGTTCAAA
                      ____________________________________________________________
consensus             AAATGACAAGAAAGTTGAATGCGCTTGTGCACAATCTATATACATAGGGGTGGGTTCAAA
 
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JMFS076B09+           TGAGAACAACCCCCTCCGGTAAAAAGTGAAGACTGATCTCAGCCACTCATCAAGTCCATC
                      ____________________________________________________________
consensus             TGAGAACAACCCCCTCCGGTAAAAAGTGAAGACTGATCTCAGCCACTCATCAAGTCCATC
 
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JMFS076B09+           AATGCCTCAATGGTTTGAGGGTCTTTCAAGTTTGCAATATTTATAAAACTAATCCTATCC
                      ____________________________________________________________
consensus             AATGCCTCAATGGTTTGAGGGTCTTTCAAGTTTGCAATATTTATAAAACTAATCCTATCC
 
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JMFS076B09+           TTTTTTGTCTTTTTTTTAGCAACCCTCAACCATTGATCTACCCAAATGGATAGATCAAAT
                      ____________________________________________________________
consensus             TTTTTTGTCTTTTTTTTAGCAACCCTCAACCATTGATCTACCCAAATGGATAGATCAAAT
 
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JMFS076B09+           CAATCCTCACTTTTTACCTGAGAGTTTGTTCTCACCAAAACCCTCCCCTATATAAACAAA
                      ____________________________________________________________
consensus             CAATCCTCACTTTTTACCTGAGAGTTTGTTCTCACCAAAACCCTCCCCTATATAAACAAA
 
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JMFS076B09+           AGAAATCGGCCAAAAATAGAAGTGAATTTTCCCACTCCAGTATGAAACTTCAAGAGTTCA
                      ____________________________________________________________
consensus             AGAAATCGGCCAAAAATAGAAGTGAATTTTCCCACTCCAGTATGAAACTTCAAGAGTTCA
 
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JMFS076B09+           GATCAAACCACTTGGGCATCAGCAGCACTGAGTTGCTTAGAGGACCATCAGGTGCATTGA
                      ____________________________________________________________
consensus             GATCAAACCACTTGGGCATCAGCAGCACTGAGTTGCTTAGAGGACCATCAGGTGCATTGA
 
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JMFS076B09+           TGAATTCGACCATCAGCTGTGGCGATGTACCGGCGGTATCAACGGTCGGCGATCGTTCTC
                      ____________________________________________________________
consensus             TGAATTCGACCATCAGCTGTGGCGATGTACCGGCGGTATCAACGGTCGGCGATCGTTCTC