Contig 006230:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS118B08+                TGCATTAAACCAAGGTCAAGATTTTCCAAGGAGGTCAATCTGTTGTGAGAAAGGT
                      ____________________________________________________________
consensus                  TGCATTAAACCAAGGTCAAGATTTTCCAAGGAGGTCAATCTGTTGTGAGAAAGGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS118B08+           CCAAATTCTCCAGTCTTTGTAGAGAAGACAAGCCTGACGGAACTTCAACCAATTTGTTAT
                      ____________________________________________________________
consensus             CCAAATTCTCCAGTCTTTGTAGAGAAGACAAGCCTGACGGAACTTCAACCAATTTGTTAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS118B08+           TGGCAACTTTCAGTGATAATAATGAGTTGAGATATGTTATTTCAGTTGGTAAATTCCTCA
                      ____________________________________________________________
consensus             TGGCAACTTTCAGTGATAATAATGAGTTGAGATATGTTATTTCAGTTGGTAAATTCCTCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS118B08+           TCTTATTGAATGAAATATCTAGGTACTCCAGATTGATGAGATAGCCTATCTCTGGGGGCA
                      ____________________________________________________________
consensus             TCTTATTGAATGAAATATCTAGGTACTCCAGATTGATGAGATAGCCTATCTCTGGGGGCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS118B08+           GGAATCTAATGGAAAAATGGCAAACAGAGAGCTTTGTTAGCCGCTTAAGCCCTGTGATAT
                      ____________________________________________________________
consensus             GGAATCTAATGGAAAAATGGCAAACAGAGAGCTTTGTTAGCCGCTTAAGCCCTGTGATAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS118B08+           CTCTAAAAATTGGGAAAGCCGAAGGCCTTGAGGGTACTTTACAGAGCTCAAGTTCTTTCA
JMFS052G04+                                              ACTTTACAGAGCTCAAGTTCTTTCA
                      ____________________________________________________________
consensus             CTCTAAAAATTGGGAAAGCCGAAGGCCTTGAGGGTACTTTACAGAGCTCAAGTTCTTTCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS118B08+           AGCCCTTGAGCTTCTGCAGATCCAACCCAGTCAAGCCCGGCAACGCCACCTTCACTTGCA
JMFS068H04+                         TGCAGATCCAACCCAGTCAAGCCCGGCAACGCCACCTTCACTTGCA
JMFS052G04+           AGCCCTTGAGCTTCTGCAGATCCAACNCAGTCAAGCCCGGCAACGCCACCTTCACTTGCA
                      ____________________________________________________________
consensus             AGCCCTTGAGCTTCTGCAGATCCAACCCAGTCAAGCCCGGCAACGCCACCTTCACTTGCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS118B08+           AGCACTCGAGCTCAACTAAGTTCTTCAGCTCCCCAGGAGGGAACAAATTCACATCGTTGG
JMFS068H04+           AGCACTCGAGCTCAACTAAGTTCTTCAGCTCCCCAGGAGGGAACAAATTCACATCGTTGG
JMFS052G04+           AGCACTCGAGCTCAACTAAGTTCTTCAGCTCCCCAGGAGGGAACAAATTCACATCGTTGG
                      ____________________________________________________________
consensus             AGCACTCGAGCTCAACTAAGTTCTTCAGCTCCCCAGGAGGGAACAAATTCACATCGTTGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS118B08+           CAAAGAATTTGAGCGTCTTCAGTCTCCCCAGGCCCCCACTCGCTTTCGGGATCAAATTGA
JMFS068H04+           CAAAGAATTTGAGCGTCTTCAGTCTCCCCAGGCCCCCACTCGCTTTCGGGATCAAATTGA
JMFS052G04+           CAAAGAATTTGAGCGTCTTCAGTCTCCCCAGGCCCCCACTCGCTTTCGGGATCAAATTGA
                      ____________________________________________________________
consensus             CAAAGAATTTGAGCGTCTTCAGTCTCCCCAGGCCCCCACTCGCTTTCGGGATCAAATTGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS118B08+           ATGTATTCTTGTACACATACAAACCCTCCACTTCCCCTCCTTCGCATTCCAACACAGGAA
JMFS068H04+           ATGTATTCTTGTACACATACAAACCCTCCACTTCCCCTCCTTCGCATTCCAACACAGGAA
JMFS052G04+           ATGTATTCTTGTACACATACAAACCCTCCACTTCCCCTCCTTCGCATTCCAACACAGGAA
                      ____________________________________________________________
consensus             ATGTATTCTTGTACACATACAAACCCTCCACTTCCCCTCCTTCGCATTCCAACACAGGAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS118B08+           AGTCGAAACTTTTCCCGGAAACATCAATAATC                            
JMFS068H04+           AGTCGAAACTTTTCCCGGAAACATCAATAATCGAGTCGAAAACCTCGGCCTTTTTGGGAG
JMFS052G04+           AGTCGAAACTTTTCCCGGAAACATCAATAATCGAGTCGAAAACCTCGGCCTTTTTGGGAG
                      ____________________________________________________________
consensus             AGTCGAAACTTTTCCCGGAAACATCAATAATCGAGTCGAAAACCTCGGCCTTTTTGGGAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS068H04+           CATCTTCCTCCAAGCTCTTCAAATCGACAGTCTCATCTGAATTTCTTGGCGCATTCTTGC
JMFS052G04+           CATCTTCCTCCAAGCTCTTCAAATCGACAGTCTCATCTGAATTTCTTGGCGCATTCTTGC
                      ____________________________________________________________
consensus             CATCTTCCTCCAAGCTCTTCAAATCGACAGTCTCATCTGAATTTCTTGGCGCATTCTTGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS068H04+           AGGAATTGTCAGCTTCTTCGGAATCTTTCTCATGAATCTCAATTTTGTCCATCAAGTAGA
JMFS052G04+           AGGAATTGTCAGCTTCTTCGGAATCTTTCTCATGAATCTCAATTTTGTCCATCAAGTAGA
                      ____________________________________________________________
consensus             AGGAATTGTCAGCTTCTTCGGAATCTTTCTCATGAATCTCAATTTTGTCCATCAAGTAGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS068H04+           CGATGAAATTTGTTGAGTATTATAGTGAAAGAATGAGAGAAATCAATAATCAAGAAAATT
JMFS052G04+           CGATGAAATTTGTTGAGTATTATAGTGAAAGAATGAGAGAAATCAATAATCAAGAAAATT
                      ____________________________________________________________
consensus             CGATGAAATTTGTTGAGTATTATAGTGAAAGAATGAGAGAAATCAATAATCAAGAAAATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS068H04+           AGAAACCTTAGGGAGCTGGTAGCGCTGACATATGAACTCTTGGGCTACAGTGAAAACAGT
JMFS052G04+           AGAAACCTTAGGGAGCTGGTAGCGCTGACATATGAACTCTTGGGCTACAGTGAAAACAGT
                      ____________________________________________________________
consensus             AGAAACCTTAGGGAGCTGGTAGCGCTGACATATGAACTCTTGGGCTACAGTGAAAACAGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFS068H04+           AATAAGATAGAGAAATGGAGAGAGGGAGCGAACTAGAGAGATG                 
JMFS052G04+           AATAAGATAGAGAAATGGAGAGAGGGAGCGAACTAGAGAGATGGGGCTCCCAGAAAATAA
                      ____________________________________________________________
consensus             AATAAGATAGAGAAATGGAGAGAGGGAGCGAACTAGAGAGATGGGGCTCCCAGAAAATAA