Contig 006228:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF045I23Sequence645006228 (2)ref|XP_009757640.1|6e-39PREDICTED: SURP and G-patch domain-containing protein 1-like protein [Nicotiana596002691 (4)ref|XP_002513189.1|6e-51arginine/serine rich splicing factor sf4/14, putative [Ricinus communis] gb|EEF
JMFS049A01Sequence623006228 (2)ref|XP_009757640.1|3e-36PREDICTED: SURP and G-patch domain-containing protein 1-like protein [Nicotiana

Alignment

This contig is upended


. : . : . : . : . : . :
JMFF045I23+ TCATAATAT
                      ____________________________________________________________
consensus TCATAATAT
 
. : . : . : . : . : . :
JMFF045I23+ AAATAATTACCAACATCAAATTGCNTCAATGATTGCACAGAACCAACGGGCTCATCCAAC
JMFS049A01+ CAGAACCAACGGGCTCATCCAAC
                      ____________________________________________________________
consensus AAATAATTACCAACATCAAATTGCNTCAATGATTGCACAGAACCAACGGGCTCATCCAAC
 
. : . : . : . : . : . :
JMFF045I23+ TTTTGCCGTTTAGATGGGGCATCTCCAGAAGGATTTCCAGCATCCTTTTCATTCTCATCC
JMFS049A01+ TTTGNCCGTTTAGATGGGGCATCTCCAGAAGGATTTCCAGCATCCTTTTCATTCTCATCC
                      ____________________________________________________________
consensus TTTTGCCGTTTAGATGGGGCATCTCCAGAAGGATTTCCAGCATCCTTTTCATTCTCATCC
 
. : . : . : . : . : . :
JMFF045I23+ TCATCTTCACCCAACTTAACAGAAGGTGCCACAATTTTAGACTTCTGTTTTAGGCTGAAT
JMFS049A01+ TCATCTTCACCCAACTTAACAGAAGGTGCCACAATTTTAGACTTCTGTTTTAGGCTGAAT
                      ____________________________________________________________
consensus TCATCTTCACCCAACTTAACAGAAGGTGCCACAATTTTAGACTTCTGTTTTAGGCTGAAT
 
. : . : . : . : . : . :
JMFF045I23+ GCAAGTTTCCCACCAGAAGGAGCAGGAGTGGGCTTTCGAGATTCATTGCCCTTTAATGCA
JMFS049A01+ GCAAGTTTCCCACCAGAAGGAGCAGGAGTGGGCTTTCGAGATTCATTGCCCTTTAATGCA
                      ____________________________________________________________
consensus GCAAGTTTCCCACCAGAAGGAGCAGGAGTGGGCTTTCGAGATTCATTGCCCTTTAATGCA
 
. : . : . : . : . : . :
JMFF045I23+ AAGCTTGTTTTATTAATGATAAGCTTGGGAGTTGAAGTTCCTGACAAATTTGAAGCTACT
JMFS049A01+ AAGCTTGTTTTATTAATGATAAGCTTGGGAGTTGAAGTTCCTGACAAATTTGAAGCTACT
                      ____________________________________________________________
consensus AAGCTTGTTTTATTAATGATAAGCTTGGGAGTTGAAGTTCCTGACAAATTTGAAGCTACT
 
. : . : . : . : . : . :
JMFF045I23+ TTTGAACTCTTTAATTCAGTGTCTGTCTTCCCCTTCTCCTTATCCTTCTCTTGTTGAAGC
JMFS049A01+ TTTGAACTCTTTAATTCAGTGTCTGTCTTCCCCTTCTCCTTATCCTTCTCTTGTTGAAGC
                      ____________________________________________________________
consensus TTTGAACTCTTTAATTCAGTGTCTGTCTTCCCCTTCTCCTTATCCTTCTCTTGTTGAAGC
 
. : . : . : . : . : . :
JMFF045I23+ TGTTTAAACCTCTCCATGAATGAACCATCATTAACAAAGAGGCTAGGATCTTTTGCTTTC
JMFS049A01+ TGTTTAAACCTCTCCATGAATGAACCATCATTAACAAAGAGGCTAGGATCTTTTGCTTTC
                      ____________________________________________________________
consensus TGTTTAAACCTCTCCATGAATGAACCATCATTAACAAAGAGGCTAGGATCTTTTGCTTTC
 
. : . : . : . : . : . :
JMFF045I23+ TCCATTGACAAAACTTCTACTACGAATTTTTGGTCACCACAATGTTTCACTG
JMFS049A01+ TCCATTGACAAAACTTCTACTACGAATTTTTGGTCACCACAATGTTTCACTGGAAAGGAA
                      ____________________________________________________________
consensus TCCATTGACAAAACTTCTACTACGAATTTTTGGTCACCACAATGTTTCACTGGAAAGGAA
 
. : . : . : . : . : . :
JMFS049A01+ AATCAAGAATCGTCTCCAATTCAGTCTTCGATTGGATTGTGATCAGTGCAAGAAAGGATG
                      ____________________________________________________________
consensus AATCAAGAATCGTCTCCAATTCAGTCTTCGATTGGATTGTGATCAGTGCAAGAAAGGATG
 
. : . : . : . : . : . :
JMFS049A01+ ATCGGGATGCAAACCAGAGATACATGTACTGACATACAGGCGAGATATTGTGTGATGGCA
                      ____________________________________________________________
consensus ATCGGGATGCAAACCAGAGATACATGTACTGACATACAGGCGAGATATTGTGTGATGGCA
 
. : . : . : . : . : . :
JMFS049A01+ ACGCACCCTTCTTCGTCGGGTTGGATACAACGTATGTTAAATGATAGGACGAGGAAAGGA
                      ____________________________________________________________
consensus ACGCACCCTTCTTCGTCGGGTTGGATACAACGTATGTTAAATGATAGGACGAGGAAAGGA