Contig 006222:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF045F10Sequence629006222 (8)ref|XP_009617273.1|2e-78PREDICTED: importin-5-like [Nicotiana tomentosiformis]427005522 (4)
JMFS030C01Sequence604006222 (8)ref|XP_009617273.1|5e-89PREDICTED: importin-5-like [Nicotiana tomentosiformis]
JMFS043G09Sequence608006222 (8)ref|XP_009617273.1|1e-65PREDICTED: importin-5-like [Nicotiana tomentosiformis]
JMFS146E07Sequence620006222 (8)ref|XP_009617273.1|1e-92PREDICTED: importin-5-like [Nicotiana tomentosiformis]
JMSF017N08Sequence460006222 (8)ref|XP_009617273.1|3e-52PREDICTED: importin-5-like [Nicotiana tomentosiformis]736005522 (4)gb|ABR17301.1|4e-48unknown [Picea sitchensis]
JMSF020E21Sequence582006222 (8)ref|XP_009805031.1|1e-74PREDICTED: importin-5-like [Nicotiana sylvestris]707006485 (18)gb|ACD54843.1|2e-97farnesyl pyrophosphate syntethase [Olea europaea]
JMSF020H19Sequence682006222 (8)ref|XP_009617273.1|4e-103PREDICTED: importin-5-like [Nicotiana tomentosiformis]701005522 (4)ref|XP_009757753.1|3e-81PREDICTED: importin-5-like [Nicotiana sylvestris]
JMSF021P08Sequence651006222 (8)ref|XP_009617273.1|5e-98PREDICTED: importin-5-like [Nicotiana tomentosiformis]719005522 (4)ref|XP_009757753.1|1e-68PREDICTED: importin-5-like [Nicotiana sylvestris]

Alignment

This contig is upended


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JMSF021P08+                                                  ATGTATGGGACCAGGGTCTCG
JMSF020H19+                             AACACCGAGTGCAAATCCTTGATGTATGGGACCAGGGTCTCG
                      ____________________________________________________________
consensus                               AACACCGAGTGCAAATCCTTGATGTATGGGACCAGGGTCTCG
 
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JMFS146E07+                    TGTGCCAATTGAGCAAAAATCAGGAACGCGGACTCCTGTAGCTTTGGAGAA
JMFS030C01+                          AATTGAGCAAAAATCAGGAACGCGGACTCCTGTAGCTTTGGAGAA
JMSF021P08+           CCTATGTACTGTGCCAATTGAGCAAAAATCAGGAACGCGGACTCCTGTAGCTTTGGAGAA
JMFF045F10+                    TGTGCCAATTGAGCAAAAATCAGGAACGCGGACTCCTGTAGC-TTGGAGAA
JMSF020H19+           CCTATGTACTGTGCCAATTGAGCAAAAATCAGGAACGCGGACTCCTGTAGCTTTGGAGAA
JMSF020E21+                                                                     AA
                      ____________________________________________________________
consensus             CCTATGTACTGTGCCAATTGAGCAAAAATCAGGAACGCGGACTCCTGTAGCTTTGGAGAA
 
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JMFS146E07+           TCGGAGGTAACGCATTGGAACATAAAGGGTAGAATTTCAGGCCACTGGTTCTCAGGGAGA
JMFS030C01+           TCGNAGGTAACGCATTGGAACATAAAGGGTAGAATTTCAGGCCACTGGTTCTCAGGGAGA
JMSF021P08+           TCGGAGGTAACGCATTGGAACATAAAGGGTAGAATTTCAGGCCACTGGTTCTCAGGGAGA
JMFF045F10+           TCGGAGGTAACGCATTGGAACATAAAGGGTAGAATTTCAGGCCACTGGTTCTCAGGGAGA
JMSF020H19+           TCGGAGGTAACGCATTGGAACATAAAGGGTAGAATTTCAGGCCACTGGTTCTCAGGGAGA
JMSF020E21+           TCGGAGGTAACGCATTGGAACATAAAGGGTAGAATTTCAGGCCACTGGTTCTCAGGGAGA
JMFS043G09+                                                               CAGGGAGA
                      ____________________________________________________________
consensus             TCGGAGGTAACGCATTGGAACATAAAGGGTAGAATTTCAGGCCACTGGTTCTCAGGGAGA
 
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JMFS146E07+           ATCGACGAGGCAAGCTCCGATATGGTATCGCAGAGCTTCTTAATTATGGTTTTAACCTCC
JMFS030C01+           ATCGACGAGGCAAGCTCCGATATGGTATCGCAGAGCTTCTTAATTATGGTTTTAACCTCC
JMSF021P08+           ATCGACGAGGCAAGCTCCGATATGGTATCGCAGAGCTTCTTAATTATGGTTTTAACCTCC
JMFF045F10+           ATCGACGAGGCAAGCTCCGATATGGTATCGCAGAGCTTCTTAATTATGGTTTTAACCTCC
JMSF020H19+           ATCGACGAGGCAAGCTCCGATATGGTATCGCAGAGCTTCTTAATTATGGTTTTAACCTCC
JMSF020E21+           ATCGACGAGGCAAGCTCCGATATGGTATCGCAGAGCTTCTTAATTATGGTTTTAACCTCC
JMFS043G09+           ATCGACGAGGCAAGCTCCGATATGGTATCGCAGAGCTTCTTAATTATGGTTTTAACCTCC
                      ____________________________________________________________
consensus             ATCGACGAGGCAAGCTCCGATATGGTATCGCAGAGCTTCTTAATTATGGTTTTAACCTCC
 
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JMFS146E07+           TCCTTCTGGATGCAGGTTAGAAGCATGGATTTGATGCCGGACTGAGTCGACGAGGAGAGG
JMFS030C01+           TCCTTCTGGATGCAGGTTAGAAGCATGGATTTGATGCCGGACTGAGTCGACGAGGAGAGG
JMSF021P08+           TCCTTCTGGATGCAGGTTAGAAGCATGGATTTGATGCCGGACTGAGTCGACGAGGAGAGG
JMFF045F10+           TCCTTCTGGATGCAGGTTAGAAGCATGGATTTGATGCCGGACTGAGTCGACGAGGAGAGG
JMSF020H19+           TCCTTCTGGATGCAGGTTAGAAGCATGGATTTGATGCCGGACTGAGTCGACGAGGAGAGG
JMSF020E21+           TCCTTCTGGATGCAGGTTAGAAGCATGGATTTGATGCCGGACTGAGTCGACGAGGAGAGG
JMSF017N08+            CCTTCTGGATGCAGGTTAGAAGCATGGATTTGATGCCGGACTGAGTCGACGAGGAGAGG
JMFS043G09+           TCCTTCTGGATGCAGGTTAGAAGCATGGATTTGATGCCGGACTGAGTCGACGAGGAGAGG
                      ____________________________________________________________
consensus             TCCTTCTGGATGCAGGTTAGAAGCATGGATTTGATGCCGGACTGAGTCGACGAGGAGAGG
 
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JMFS146E07+           CGGGGCCAGATGTAGGAATCGTCCCTGGTGAGGAGCTTCCGGAGGAGTATAGCCGCCATA
JMFS030C01+           CGGGGCCAGATGTAGGAATCGTCCCTGGTGAGGAGCTTCCGGAGGAGTATAGCCGCCATA
JMSF021P08+           CGGGGCCAGATGTAGGAATCGTCCCTGGTGAGGAGCTTCCGGAGGAGTATAGCCGCCATA
JMFF045F10+           CGGGGCCAGATGTAGGAATCGTCCCTGGTGAGGAGCTTCCGGAGGAGTATAGCCGCCATA
JMSF020H19+           CGGGGCCAGATGTAGGAATCGTCCCTGGTGAGGAGCTTCCGGAGGAGTATAGCCGCCATA
JMSF020E21+           CGGGGCCAGATGTAGGAATCGTCCCTGGTGAGGAGCTTCCGGAGGAGTATAGCCGCCATA
JMSF017N08+           CGGGGCCAGATGTAGGAATCGTCCCTGGTGAGGAGCTTCCGGAGGAGTATAGCCGCCATA
JMFS043G09+           CGGGGCCAGATGTAGGAATCGTCCCTGGTGAGGAGCTTCCGGAGGAGTATAGCCGCCATA
                      ____________________________________________________________
consensus             CGGGGCCAGATGTAGGAATCGTCCCTGGTGAGGAGCTTCCGGAGGAGTATAGCCGCCATA
 
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JMFS146E07+           GCGCGGGCTTCAACGTGGACGCACGAGCTGAGAACATGGGCGAGCTTAAGCACAAGCGAG
JMFS030C01+           GCGCGGGCTTCAACGTGGACGCACGAGCTGAGAACATGGGCGAGCTTAAGCACAAGCGAG
JMSF021P08+           GCGCGGGCTTCAACGTGGACGCACGAGCTGAGAACATGGGCGAGCTTAAGCACAAGCGAG
JMFF045F10+           GCGCGGGCTTCAACGTGGACGCACGAGCTGAGAACATGGGCGAGCTTAAGCACAAGCGAG
JMSF020H19+           GCGCGGGCTTCAACGTGGACGCACGAGCTGAGAACATGGGCGAGCTTAAGCACAAGCGAG
JMSF020E21+           GCGCGGGCTTCAACGTGGACGCACGAGCTGAGAACATGGGCGAGCTTAAGCACAAGCGAG
JMSF017N08+           GCGCGGGCTTCAACGTGGACGCACGAGCTGAGAACATGGGCGAGCTTAAGCACAAGCGAG
JMFS043G09+           GCGCGGGCTTCAACGTGGACGCACGAGCTGAGAACATGGGCGAGCTTAAGCACAAGCGAG
                      ____________________________________________________________
consensus             GCGCGGGCTTCAACGTGGACGCACGAGCTGAGAACATGGGCGAGCTTAAGCACAAGCGAG
 
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JMFS146E07+           TTCGGATCGTTCTGCTTGATGAGGTTGAAGATAGACTCAGCCTGGGATCTCTGCTCGTTG
JMFS030C01+           TTCGGATCGTTCTGCTTGATGAGGTTGAAGATAGACTCAGCCTGGGATCTCTGCTCGTTG
JMSF021P08+           TTCGGATCGTTCTGCTTGATGAGGTTGAAGATAGACTCAGCCTGGGATCTCTGCTCGTTG
JMFF045F10+           TTCGGATCGTTCTGCTTGATGAGGTTGAAGATAGACTCAGCCTGGGATCTCTGCTCGTTG
JMSF020H19+           TTCGGATCGTTCTGCTTGATGAGGTTGAAGATAGACTCAGCCTGGGATCTCTGCTCGTTG
JMSF020E21+           TTCGGATCGTTCTGCTTGATGAGGTTGAAGATAGACTCAGCCTGGGATCTCTGCTCGTTG
JMSF017N08+           TTCGGATCGTTCTGCTTGATGAGGTTGAAGATAGACTCAGCCTGGGATCTCTGCTCGTTG
JMFS043G09+           TTCGGATCGTTCTGCTTGATGAGGTTGAAGATAGACTCAGCCTGGGATCTCTGCTCGTTG
                      ____________________________________________________________
consensus             TTCGGATCGTTCTGCTTGATGAGGTTGAAGATAGACTCAGCCTGGGATCTCTGCTCGTTG
 
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JMFS146E07+           GCGGAGGACATGAGGTGAGAGATTAGGGTTTCGAACGGCCCCGGGTCCGGCCCCATGATT
JMFS030C01+           GCGGAGGACATGAGGTGAGAGATTAGGGTTTCGAACGGCCCCGGGTCCGGCCCCATGATT
JMSF021P08+           GCGGAGGACATGAGGTGAGAGATTAGGGTTTCGAACGGCCCCGGGTCCGGCCCCATGATT
JMFF045F10+           GCGGAGGACATGAGGTGAGAGATTAGGGTTTCGAACGGCCCCGGGTCCGGCCCCATGATT
JMSF020H19+           GCGGAGGACATGAGGTGAGAGATTAGGGTTTCGAACGGCCCCGGGTCCGGCCCCATGATT
JMSF020E21+           GCGGAGGACATGAGGTGAGAGATTAGGGTTTCGAACGGCCCCGGGTCCGGCCCCATGATT
JMSF017N08+           GCGGAGGACATGAGGTGAGAGATTAGGGTTTCGAACGGCCCCGGGTCCGGCCCCATGATT
JMFS043G09+           GCGGAGGACATGAGGTGAGAGATTAGGGTTTCGAACGGCCCCGGGTCCGGCCCCATGATT
                      ____________________________________________________________
consensus             GCGGAGGACATGAGGTGAGAGATTAGGGTTTCGAACGGCCCCGGGTCCGGCCCCATGATT
 
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JMFS146E07+           GCGGCGAGTTGAGCTTGCTGGAACTGAGCCGACCCGGCATCCATGGCGACAGAAGAACTA
JMFS030C01+           GCGGCGAGTTGAGCTTGCTGGAACTGAGCCGACCCGGCATCCATGGCGACAGAAGAACTA
JMSF021P08+           GCGGCGAGTTGAGCTTGCTGGAACTGAGCCGACCCGGCATCCATGGCGACAGAAGAACTA
JMFF045F10+           GCGGCGAGTTGAGCTTGCTGGAACTGAGCCGACCCGGCATCCATGGCGACAGAAGAACTA
JMSF020H19+           GCGGCGAGTTGAGCTTGCTGGAACTGAGCCGACCCGGCATCCATGGCGACAGAAGAACTA
JMSF020E21+           GCGGCGANTTGAGCTTGCTGGAANTGAGCCGACCCGGCATCCATGGCGACAGAAGAACTA
JMSF017N08+           GCGGCGAGTTGAGCTTGCTGGAACTGAGCCGACCCGGCATCCATGGCGACAGAAGAACTA
JMFS043G09+           GCGGCGAGTTGAGCTTGCTGGAACTGAGCCGACCCGGCATCCATGGCGACAGAAGAACTA
                      ____________________________________________________________
consensus             GCGGCGAGTTGAGCTTGCTGGAACTGAGCCGACCCGGCATCCATGGCGACAGAAGAACTA
 
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JMFS146E07+           GAACTAGGGTTTCACGGAGAAGAAGAAGATGACTAGACAGAGAGAGAGGGGGATGGTGAT
JMFS030C01+           GAACTAGGGTTTCACGGAGAAGAAGAAGATGACTAGACAGAGAGAGAGGGGGATGGTGAT
JMSF021P08+           GAACTAGGGTTTCACGGAGAAGAAGAAGATGACTAGACAGAGAGAGAGGGGGATGGTGAT
JMFF045F10+           GAACTAGGGTTTCACGGAGAAGAAGAAGATGACTAGACAGAGAGAGAGGGGGATGGTGAT
JMSF020H19+           GAACTAGGGTTTCACGGAGAAGAAGAAGATGACTAGACAGAGAGAGAGGGGGATGGTGAT
JMSF020E21+           GAACTAGGGTTTCACGGAGAAGAAGAAGATGACTAGACAGAGAGAGAGGGGGATGGTGAT
JMSF017N08+           GAACTAGGGTTTCACGGAGAAGAAGAAGATGACTAGACAGAGAGAGAGGGGGATGGTGAT
JMFS043G09+           GAACTAGGGTTTCACGGAGAAGAAGAAGATGACTAGACAGAGAGAGAGGGGGATGGTGAT
                      ____________________________________________________________
consensus             GAACTAGGGTTTCACGGAGAAGAAGAAGATGACTAGACAGAGAGAGAGGGGGATGGTGAT
 
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JMFS146E07+           GGCGTCGGCTTCCGGTTTTTCTC                                     
JMFS030C01+           GGCGTCGGCTTCCGGTTTT                                         
JMSF021P08+           GGCGTCGGCTTCCGGTTTTTCTCTCTCAC                               
JMFF045F10+           GGCGTCGGCTTCCGGTTTTTCTCTCTCACACACACAATC                     
JMSF020H19+           GGCGTCGGCTTCCGGTTTTTCTCTCTCACACACACAATC                     
JMSF020E21+           GGCGTCGGCTTCCGGTTTTTCTCTCTCACACACACAATC                     
JMSF017N08+           GGCGTCGGCTTCCGGTTTTTCTCTCTCACACACACAATC                     
JMFS043G09+           GGCGTCGGCTTCCGGTTTTTCTCTCTCACACACACAATCACCGTATTGTGTGTGTTTCGC
                      ____________________________________________________________
consensus             GGCGTCGGCTTCCGGTTTTTCTCTCTCACACACACAATCACCGTATTGTGTGTGTTTCGC
 
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JMFS043G09+           TATGAATTTATAGCGGTTTGCACGCAGGCGGGAGGGCGGGCGCACACTCTATAAAAGTGG
                      ____________________________________________________________
consensus             TATGAATTTATAGCGGTTTGCACGCAGGCGGGAGGGCGGGCGCACACTCTATAAAAGTGG