Contig 006220:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF045H09Sequence643022777496006220 (4)ref|XP_011100048.1|1e-17PREDICTED: F-box protein FBW2 [Sesamum indicum] ref|XP_011100049.1| PREDICTED: F
JMFS042D12Sequence611006220 (4)ref|XP_010267277.1|4e-04PREDICTED: F-box protein FBW2-like [Nelumbo nucifera] ref|XP_010267287.1| PREDIC
JMSF041P23Sequence725006220 (4)gb|KHG00392.1|2e-74F-box FBW2 -like protein [Gossypium arboreum]786006220 (4)ref|XP_004250104.1|9e-75PREDICTED: F-box protein FBW2 [Solanum lycopersicum]

Alignment

This contig is upended


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rJMFF045H09-                                                                 GCATT
                      ____________________________________________________________
consensus                                                                    GCATT
 
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rJMFF045H09-          ATATTTATTTATTATTATATCATTTGCAAAGAACAACCATTCCAAGCACAAATGGTTGAA
rJMSF041P23-                                          ACAACCATTCCAAGCACAAATGGTTGAA
                      ____________________________________________________________
consensus             ATATTTATTTATTATTATATCATTTGCAAAGAACAACCATTCCAAGCACAAATGGTTGAA
 
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rJMFF045H09-          ACCCTTACTTAAACAGACCCTATAATAAACCCCTATTTTATATATCAAATGCAGCAAACA
rJMSF041P23-          ACACTTACTTAAACAGACACTATAATAAACACCTATATTATATATCAAATGCAGCAGACA
                      ____________________________________________________________
consensus             ACCCTTACTTAAACAGACCCTATAATAAACCCCTATTTTATATATCAAATGCAGCAGACA
 
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rJMFF045H09-          AGTTTGATAGGGGATATACTATAATAAAAAGATAGGAGCTTTATGAATATGAAATAAAAA
rJMSF041P23-          AGTTTGATAGGGGATATACTATAATAGAAAGATAGGAGCTTTATGAATATGAAATAAGAA
                      ____________________________________________________________
consensus             AGTTTGATAGGGGATATACTATAATAGAAAGATAGGAGCTTTATGAATATGAAATAAGAA
 
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rJMFF045H09-          GCTTCTCCAGCAAGCTTTCAAGGAAATTGGGGCCAATCATATCCACTATTGAGGGTATTC
rJMSF041P23-          GCTTCTCCAGCAAGCTTTCAAGGAGATTGGGGCCAATCATATCCACTATTGATGGTATTC
                      ____________________________________________________________
consensus             GCTTCTCCAGCAAGCTTTCAAGGAGATTGGGGCCAATCATATCCACTATTGATGGTATTC
 
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rJMFF045H09-          ACCCCATCAAAAAACCACATTTGCACATCCTCAACACCTTCTTCATCCTCCCACACCCCA
rJMSF041P23-          AGCCCATCATAAAACCACATTTGCACATCCTCAACACCTTCTTCATCCTCCCACACCCCA
                      ____________________________________________________________
consensus             AGCCCATCATAAAACCACATTTGCACATCCTCAACACCTTCTTCATCCTCCCACACCCCA
 
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rJMFF045H09-          TCCAATATATCAAACTCGTCATCCAAATCCCCGGCAACAAAGTCCCACGGCAGGTACCCA
rJMSF041P23-          TCCGATATATCATACTCGTCATCCAAATCCCCGGCAACGAAGTCCCACGGCAGGTACACA
                      ____________________________________________________________
consensus             TCCGATATATCATACTCGTCATCCAAATCCCCGGCAACGAAGTCCCACGGCAGGTACCCA
 
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rJMFF045H09-          AACGACCCGGAATTATCAAAGCAATTTTCCCATGCTTGCGGATCATAGCGGTCAAAAACG
rJMSF041P23-          GACGACCCGGAATTATCAGAGCAATTTTCCCATGCTTGCGGATCATAGCGGTCGAAAACG
                      ____________________________________________________________
consensus             GACGACCCGGAATTATCAGAGCAATTTTCCCATGCTTGCGGATCATAGCGGTCGAAAACG
 
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rJMFF045H09-          ACCGGTCCAACAACCTTCAATCCCAAATTCTTCTTCACGCTCTCGTCAATGCTAACTCCC
rJMSF041P23-          ACCGGTCCAACGACCTTCAATCCCGAATTCTTCTTCACGCTCTCGTCGATGCTAACTCCC
                      ____________________________________________________________
consensus             ACCGGTCCAACGACCTTCAATCCCGAATTCTTCTTCACGCTCTCGTCGATGCTAACTCCC
 
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rJMFF045H09-          CAGCATCCCC                                                  
rJMSF041P23-          CAGCATCCCCGAATGTCCAGTACTTCGAGCTCGGTGCAACTCTTGACTATCTCGTTCACG
                      ____________________________________________________________
consensus             CAGCATCCCCGAATGTCCAGTACTTCGAGCTCGGTGCAACTCTTGACTATCTCGTTCACG
 
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rJMSF041P23-          CTTTCTGAAGTGACGAGCATGTACCCAATCTCGAGCTGCTTGAGCTTCGGCATCGTGGCG
                      ____________________________________________________________
consensus             CTTTCTGAAGTGACGAGCATGTACCCAATCTCGAGCTGCTTGAGCTTCGGCATCGTGGCG
 
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rJMSF041P23-          GCAATCGCGTACGCTTCGTCGTCCTGGTCGCCCTTGTCGATGACCTCTAGGGGGTGCATT
JMSF041P23+                                                                GTGCATT
                      ____________________________________________________________
consensus             GCAATCGCGTACGCTTCGTCGTCCTGGTCGCCCTTGTCGATGACCTCTAGGGGGTGCATT
 
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rJMSF041P23-          GTTCGGCGGAGGAAAGTGAGATTCTTGCAATGCTTCCCGAACGCTTCGATCGCTCCCACC
JMSF041P23+           GTTCGGCGGAGGAAAGTGAGATTCTTGCAATGCTTCCCGAACGCTTCGATCGCTCCCACC
                      ____________________________________________________________
consensus             GTTCGGCGGAGGAAAGTGAGATTCTTGCAATGCTTCCCGAACGCTTCGATCGCTCCCACC
 
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rJMSF041P23-          CCCATATCGATGCAGTAGCTTATATCCNAGAACGTAACGTTACTGAACTTCCCGGCTAAC
JMSF041P23+           CCCATATCGATGCAGTAGCTTATATCCAAGAACGTAACGTTACTGAACTTCCCGGCTAAC
                      ____________________________________________________________
consensus             CCCATATCGATGCAGTAGCTTATATCCAAGAACGTAACGTTACTGAACTTCCCGGCTAAC
 
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rJMSF041P23-          TGGTCCACGACGGG                                              
JMSF041P23+           TGTTCCACGACGGGATCGCTGATTTCACACCTCGTCAGGTGCAATGCCTGCAGATATTTG
                      ____________________________________________________________
consensus             TGTTCCACGACGGGATCGCTGATTTCACACCTCGTCAGGTGCAATGCCTGCAGATATTTG
 
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JMSF041P23+           GCATTGTCCGCGATTAATTCAAAGGTTTCTTTACTAGAGACACCAGAAACCGCGAGCTTA
                      ____________________________________________________________
consensus             GCATTGTCCGCGATTAATTCAAAGGTTTCTTTACTAGAGACACCAGAAACCGCGAGCTTA
 
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JMSF041P23+           CGGATTGAACCCTGAGACCTCGTAATCAGCAACTGAAGCAAGCGGTCCACAGTTCCAAAG
                      ____________________________________________________________
consensus             CGGATTGAACCCTGAGACCTCGTAATCAGCAACTGAAGCAAGCGGTCCACAGTTCCAAAG
 
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JMSF041P23+           CGGGAGCTCATGCTCCATTCCTCAATGTCTATCTCTTGCCAACAATAAGGCCCCAGCACG
                      ____________________________________________________________
consensus             CGGGAGCTCATGCTCCATTCCTCAATGTCTATCTCTTGCCAACAATAAGGCCCCAGCACG
 
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JMSF041P23+           GCTCTTTGCCACGACTTGCAAACCCTCGGGATGACAGTAAGCACATCCTGAAGCGGCAGA
                      ____________________________________________________________
consensus             GCTCTTTGCCACGACTTGCAAACCCTCGGGATGACAGTAAGCACATCCTGAAGCGGCAGA
 
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JMSF041P23+           TTCTTGAAGATCAACCCAAGAGCATCCGGTATTAACTCATCCCAGCACCGATCATTGCCA
                      ____________________________________________________________
consensus             TTCTTGAAGATCAACCCAAGAGCATCCGGTATTAACTCATCCCAGCACCGATCATTGCCA
 
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JMSF041P23+           CCATCCTCCATTTTAGCTTCTAACTCTCAAGAAACCGCAAAATCTTTAAGGCAACTCAGT
JMFS042D12+                                      CAAGAAACCGCAAAATCTTTAAGGCAACTCAGT
                      ____________________________________________________________
consensus             CCATCCTCCATTTTAGCTTCTAACTCTCAAGAAACCGCAAAATCTTTAAGGCAACTCAGT
 
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JMSF041P23+           TCGATTAGTAAAAATACCCAGCAATTCCAGCCATTTTAGTTCATCCCAAGAAATGCAGAA
JMFS042D12+           TCGATTAGTAAAAATACCCAGCAATTCCAGCCATTTTAGTTCATCCCAAGAAATGCAGAA
                      ____________________________________________________________
consensus             TCGATTAGTAAAAATACCCAGCAATTCCAGCCATTTTAGTTCATCCCAAGAAATGCAGAA
 
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JMSF041P23+           CAAGTGCTTTCAGAGTTTAAC                                       
JMFS042D12+           CAAGTGCTTTCAGAGTTTAACGTTGGGCGTTGGGGAGACGGGAGGCGTTGGGCGGTGGGA
                      ____________________________________________________________
consensus             CAAGTGCTTTCAGAGTTTAACGTTGGGCGTTGGGGAGACGGGAGGCGTTGGGCGGTGGGA
 
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JMFS042D12+           GAGGGACCCCCGGAGGCCGAAGGGTGGGGAGCGGAGAAAAGAAACCACTCAAAACCCGGA
                      ____________________________________________________________
consensus             GAGGGACCCCCGGAGGCCGAAGGGTGGGGAGCGGAGAAAAGAAACCACTCAAAACCCGGA
 
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JMFS042D12+           GAAACAGAAGCTATAAAAGCAAAAAAGATAGGATTTTGTTGCAGAAAAAACAAGAAAAAG
                      ____________________________________________________________
consensus             GAAACAGAAGCTATAAAAGCAAAAAAGATAGGATTTTGTTGCAGAAAAAACAAGAAAAAG
 
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JMFS042D12+           AGGCGTGTATGGTTACAAAAGCTCACCAAAAATTATCTGCTTTCATAAACGAACCAAATT
                      ____________________________________________________________
consensus             AGGCGTGTATGGTTACAAAAGCTCACCAAAAATTATCTGCTTTCATAAACGAACCAAATT
 
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JMFS042D12+           CATCTTCTCCATTAGAGAGATCTGTATCACTGTATATATATGCAATGCTCTGGAGACTGT
                      ____________________________________________________________
consensus             CATCTTCTCCATTAGAGAGATCTGTATCACTGTATATATATGCAATGCTCTGGAGACTGT
 
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JMFS042D12+           TCTACCTCCATTGCTGGGCTGATGTGTTTCTTCATAGATTTCTTGAATCTTTATATATAT
                      ____________________________________________________________
consensus             TCTACCTCCATTGCTGGGCTGATGTGTTTCTTCATAGATTTCTTGAATCTTTATATATAT
 
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JMFS042D12+           AGAAATCTTGAAATTTCGGAAAAATCTCCTATTTGGCTATTTCACACTAGTATGGTTTAT
                      ____________________________________________________________
consensus             AGAAATCTTGAAATTTCGGAAAAATCTCCTATTTGGCTATTTCACACTAGTATGGTTTAT