Contig 006166:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF024B11Sequence516006166 (3)ref|XP_009774085.1|8e-51PREDICTED: thioredoxin M3, chloroplastic [Nicotiana sylvestris]728006166 (3)ref|XP_009774085.1|4e-66PREDICTED: thioredoxin M3, chloroplastic [Nicotiana sylvestris]
JMFN041L21Sequence645006166 (3)ref|XP_009774085.1|4e-68PREDICTED: thioredoxin M3, chloroplastic [Nicotiana sylvestris]

Alignment

This contig is upended


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rJMFF024B11- AATCCCGTCAATATT
                      ____________________________________________________________
consensus AATCCCGTCAATATT
 
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rJMFF024B11- CGGCAATGCCATTGCCAGACAAATTTTTTGTACAACTAGTCCCATATTATTTCGTTATAC
                      ____________________________________________________________
consensus CGGCAATGCCATTGCCAGACAAATTTTTTGTACAACTAGTCCCATATTATTTCGTTATAC
 
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rJMFF024B11- CTTGCAAGACAAGAAGAGTAAAATGCAATTTGGAAGTTTAGCTAGCACCAAGTTCACTAC
                      ____________________________________________________________
consensus CTTGCAAGACAAGAAGAGTAAAATGCAATTTGGAAGTTTAGCTAGCACCAAGTTCACTAC
 
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rJMFF024B11- GTGGTAAAGATAGTAAAAAACCGAACATTTACAAAGCTTTAACAAACGTAAAACCATAAA
                      ____________________________________________________________
consensus GTGGTAAAGATAGTAAAAAACCGAACATTTACAAAGCTTTAACAAACGTAAAACCATAAA
 
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rJMFF024B11- GTTAACCATTGGTGGATCGGATTGGGCCAGTGAAACTTCGTGACTACGAACACTGTGAAC
                      ____________________________________________________________
consensus GTTAACCATTGGTGGATCGGATTGGGCCAGTGAAACTTCGTGACTACGAACACTGTGAAC
 
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rJMFF024B11- TGCTTAAGACCCTCTCTATGGCCGCCACATAGAACTCCTTAGGCATGGTACCGATGACAG
                      ____________________________________________________________
consensus TGCTTAAGACCCTCTCTATGGCCGCCACATAGAACTCCTTAGGCATGGTACCGATGACAG
 
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rJMFF024B11- AACCACATTTCTCTCCATTGTTAAACAACAAGACTACCGGCACTGCCTTGATATCGTAAT
                      ____________________________________________________________
consensus AACCACATTTCTCTCCATTGTTAAACAACAAGACTACCGGCACTGCCTTGATATCGTAAT
 
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rJMFF024B11- CCTCAGCAATTTGCAAGTCGGTATCTGCGTGGAGTACAAAGCATTTTATTCTTCCTGAAT
JMFF024B11+ GAGTACAAAGCATTTTATTCTTCCTGAAT
JMFN041L21+ GAGTACAAAGCATTTTATTCTTCCTGAAT
                      ____________________________________________________________
consensus CCTCAGCAATTTGCAAGTCGGTATCTGCGTGGAGTACAAAGCATTTTATTCTTCCTGAAT
 
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rJMFF024B11- AATCAGTTGCGATTTCATCAATCACCCTGTGGACCATCTGGCAGGGGCCACACCAACTGG
JMFF024B11+ AATCAGTTGCGATTTCATCAATCACCCTGTGGACCATCTGGCAGGGGCCACACCAACTGG
JMFN041L21+ AATCAGTTGCGATTTCATCAATCACCCTGTGGACCATCTGGCAGGGGCCACACCAACTGG
                      ____________________________________________________________
consensus AATCAGTTGCGATTTCATCAATCACCCTGTGGACCATCTGGCAGGGGCCACACCAACTGG
 
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rJMFF024B11- CATAAAACTCGACCAGTACAGGCACATCACTGCTCAGAACCAATTTGTTCCACGACTTAC
JMFF024B11+ CATAAAACTCGACCAGTACAGGCACATCACTGCTCAGAACCAATTTGTTCCACGACTTAC
JMFN041L21+ CATAAAACTCGACCAGTACAGGCACATCACTGCTCAGAACCAATTTGTTCCACGACTTAC
                      ____________________________________________________________
consensus CATAAAACTCGACCAGTACAGGCACATCACTGCTCAGAACCAATTTGTTCCACGACTTAC
 
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rJMFF024B11- CGGTGACAACTGCAGCTTTGG
JMFF024B11+ CGGTGACAACTGCAGCTTTGGAGCCACGGAGACAAGATATGCGCAAATGGGAAGCAGATG
JMFN041L21+ CGGTGACAACTGCAGCTTTGGAGCCACGGAGACAAGATATGCGCAAATGGGAAGCAGATG
                      ____________________________________________________________
consensus CGGTGACAACTGCAGCTTTGGAGCCACGGAGACAAGATATGCGCAAATGGGAAGCAGATG
 
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JMFF024B11+ GAGATTTCAAGCTCCTCTTGAGCTGTAATGGCAAAAGGAATCTGAGATTCACCTTCTGCG
JMFN041L21+ GAGATTTCAAGCTCCTCTTGAGCTGTAATGGCAAAAGGAATCTGAGATTCACCTTCTGCG
                      ____________________________________________________________
consensus GAGATTTCAAGCTCCTCTTGAGCTGTAATGGCAAAAGGAATCTGAGATTCACCTTCTGCG
 
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JMFF024B11+ GGAAGTTGGACGGCAACGAACAGAGAGAGCGGTGGCGGAGAGGCGCCTGCGGGAGTGGTA
JMFN041L21+ GGAAGTTGGACGGCAACGAACAGAGAGAGCGGTGGCGGAGAGGCGCCTGCGGGAGTGGTA
                      ____________________________________________________________
consensus GGAAGTTGGACGGCAACGAACAGAGAGAGCGGTGGCGGAGAGGCGCCTGCGGGAGTGGTA
 
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JMFF024B11+ AAGAGGAAGGAGTGGCATAACTCGAAGCCATTTTCAGTACGATCATCAGATTTCCAGAAA
JMFN041L21+ AAGAGGAAGGAGTGGCATAACTCGAAGCCATTTTCAGTACGATCATCAGATTTCCAGAAA
                      ____________________________________________________________
consensus AAGAGGAAGGAGTGGCATAACTCGAAGCCATTTTCAGTACGATCATCAGATTTCCAGAAA
 
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JMFF024B11+ TAGATCAATTCCCAGCAGTATTGAGTAGTGTTCTAGGGCGAACTCCGAAAG
JMFN041L21+ TAGATCAATTCCCAGCAGTATTGAGTAGTGTTCTAGGGCGAACTCCGAAAGGAAGATCCA
                      ____________________________________________________________
consensus TAGATCAATTCCCAGCAGTATTGAGTAGTGTTCTAGGGCGAACTCCGAAAGGAAGATCCA